BAC Information

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BAC

Clone NameB6Ng01-248I12
Chromosome6 (Build37)
Map Location 26,804,684 - 26,852,977
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248I12.bB6Ng01-248I12.g
ACCGA056584GA056585
length1,074566
definitionB6Ng01-248I12.b B6Ng01-248I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,804,684 - 26,805,759)(26,852,406 - 26,852,977)
sequence
gaattcaacaaaatcttactatgaacaaatagataattaaaataagaaaa
tcatacatgaaaaagtataaaatttaaaaggataaattgtatatatatat
atatatatgtatatatatatatatatatatacacacacacacacatatat
tcctgtaaaatgattatattgaaataagccccaacttcacggatcatgct
cttaatacgtaatagaatcatcagcttcatctttgcatgtcagatatacc
taaaaagcaagtagttcttgggccactcaatacaatgattgagccatcag
cacttaagatatgaattaatgattggagatcaaaatagactagttcaagg
tttagaactgtcagggatctgcatatctagggaaagcttcataatttcat
tactttgtcattctatcaaatgcttcactgccccaatctgtagagtctag
aataatgagatatcatcagccaagagggacaaggctttaaagcaaatgga
tggaactgtatacatgcaaaccattatgaatgggagcatgagtgggatag
ggttgtaacatgtatgtggataaaaactgtgtgaggaacagtaggccttc
aaaacaggcttcccaaaagatcaggttgcatgataaagtcagagactttt
cattaggccacatctgctgtaaataccagcaaggacctggtataacaatg
tattacatctgaacgaattgcaagacacagaatcaatctgcaaagcaata
tctaagaacatcagaactcaggaagacagagagaaaaaacagagaaccca
tatggacactttcatttccattttgataaaatattttaaatatctttgaa
aatgtcctttatttgtgttacgtagaaatgtgtttctgtttttcaatatc
ttgggacattttctagctatcattttgaaactgattctacttttagttca
ttgtggccaggcaatgaattctgctaccttctacttttttttcaactcct
tatttttaagtgaaaatttctcctatactttttaaaacagttcatttcat
gtttgtctctcttagagctccaga

aaatattcagccagtattaggctgctctctgtttactctgattaaaacaa
ttctggattgataaagatttgagtgaaaaggtttgatctgccaaattatt
aatgtcaggatagaagggataaacaaacaacacaggtattttcttaaaaa
aaattctctgggaagcagatgtgaactgcatccttaatagtctgagtgtc
attgtgctctccactataaaacactaggaattttgcaagtgtcataaaca
aaactccattttagaggggcctaagtctatgagaggtttgcaagtttcag
atttagttctagaataaaatagaaatattttactgtgaatcatttccaat
catatttactcatagagatatataacccttttaatatctaaaatacattt
acttggatagaatacatacatagcctatatatgcacagatgaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagtagaagaagaagaagaggg
ggaggggagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26804684_26805759
seq2: B6Ng01-248I12.b_46_1119

seq1  GAATTCAACAAAATCTTACTATGAACAAATAGATAATTAAAATAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAATCTTACTATGAACAAATAGATAATTAAAATAAGAAAA  50

seq1  TCATACATGAAAAAGTATAAAATTTAAAAGGATAAATTGTATATATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGAAAAAGTATAAAATTTAAAAGGATAAATTGTATATATATAT  100

seq1  ATATATATGTATATATATATATATATATATACACACACACACACATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTATATATATATATATATATATACACACACACACACATATAT  150

seq1  TCCTGTAAAATGATTATATTGAAATAAGCCCCAACTTCACGGATCATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAAATGATTATATTGAAATAAGCCCCAACTTCACGGATCATGCT  200

seq1  CTTAATACGTAATAGAATCATCAGCTTCATCTTTGCATGTCAGATATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACGTAATAGAATCATCAGCTTCATCTTTGCATGTCAGATATACC  250

seq1  TAAAAAGCAAGTAGTTCTTGGGCCACTCAATACAATGATTGAGCCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAAGTAGTTCTTGGGCCACTCAATACAATGATTGAGCCATCAG  300

seq1  CACTTAAGATATGAATTAATGATTGGAGATCAAAATAGACTAGTTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGATATGAATTAATGATTGGAGATCAAAATAGACTAGTTCAAGG  350

seq1  TTTAGAACTGTCAGGGATCTGCATATCTAGGGAAAGCTTCATAATTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACTGTCAGGGATCTGCATATCTAGGGAAAGCTTCATAATTTCAT  400

seq1  TACTTTGTCATTCTATCAAATGCTTCACTGCCCCAATCTGTAGAGTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTCATTCTATCAAATGCTTCACTGCCCCAATCTGTAGAGTCTAG  450

seq1  AATAATGAGATATCATCAGCCAAGAGGGACAAGGCTTTAAAGCAAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGATATCATCAGCCAAGAGGGACAAGGCTTTAAAGCAAATGGA  500

seq1  TGGAACTGTATACATGCAAACCATTATGAATGGGAGCATGAGTGGGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTATACATGCAAACCATTATGAATGGGAGCATGAGTGGGATAG  550

seq1  GGTTGTAACATGTATGTGGATAAAAACTGTGTGAGGAACAGTAGGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAACATGTATGTGGATAAAAACTGTGTGAGGAACAGTAGGCCTTC  600

seq1  AAAACAGGCTTCCCAAAAGATCAGGTTGCATGATAAAGTCAGAGACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCTTCCCAAAAGATCAGGTTGCATGATAAAGTCAGAGACTTTT  650

seq1  CATTAGGCCACATCTGCTGTAAATACCAGCAAGGACCTGGTATAACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCCACATCTGCTGTAAATACCAGCAAGGACCTGGTATAACAATG  700

seq1  TATTACATCTGAACGAATTGCAAGACACAGAATCAATCTGCAAAGCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATCTGAACGAATTGCAAGACACAGAATCAATCTGCAAAGCAATA  750

seq1  TCTAAGAACATCAGAACTCAGGAAGACAGAGAGAAAAAACAGAGAACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAACATCAGAACTCAGGAAGACAGAGAGAAAAAACAGAGAACCCA  800

seq1  TATGGACACTTTCATTTCCATTTTGATAAAATATTTTAAATATCTTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACACTTTCATTTCCATTTTGATAAAATATTTTAAATATCTTTGAA  850

seq1  AATGTCC-TTATTTGTGTTACGTAGAAATGTGTTTCTGTTTTTCAATATC  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTTATTTGTGTTACGTAGAAATGTGTTTCTGTTTTTCAATATC  900

seq1  TTGGGACATTTTCTAGCTATCATTTTGAAACTGATTTCTACTTTTAGTTC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGGGACATTTTCTAGCTATCATTTTGAAACTGA-TTCTACTTTTAGTTC  949

seq1  ATTGTGGCCAGGCAATGAATTCTGCCTACCTTCTACTTTTTTTTTCAACT  999
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  ATTGTGGCCAGGCAATGAATTCTG-CTACCTTCTAC-TTTTTTTTCAACT  997

seq1  CCTAATTTTTAAGTGAAAATTTCTCCTATACTTTTTAAAACAGTCATTTT  1049
      ||| ||||||||||||||||||||||||||||||||||||||||   |||
seq2  CCTTATTTTTAAGTGAAAATTTCTCCTATACTTTTTAAAACAGTTCATTT  1047

seq1  CAATGTTTGTCTCTC-TAGAGCTCCAGA  1076
      | ||||||||||||| ||||||||||||
seq2  C-ATGTTTGTCTCTCTTAGAGCTCCAGA  1074


seq1: chr6_26852406_26852977
seq2: B6Ng01-248I12.g_66_637 (reverse)

seq1  CCTCCCCCTCCCCTCCCCCTCTTCTTCTTCTTCTACTTCTTCTTCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCCCCTCCCCCTCTTCTTCTTCTTCTACTTCTTCTTCTTCTT  50

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  100

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCATCTGTGCATATATAGGCTATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCATCTGTGCATATATAGGCTATGTA  150

seq1  TGTATTCTATCCAAGTAAATGTATTTTAGATATTAAAAGGGTTATATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTATCCAAGTAAATGTATTTTAGATATTAAAAGGGTTATATATC  200

seq1  TCTATGAGTAAATATGATTGGAAATGATTCACAGTAAAATATTTCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGTAAATATGATTGGAAATGATTCACAGTAAAATATTTCTATTT  250

seq1  TATTCTAGAACTAAATCTGAAACTTGCAAACCTCTCATAGACTTAGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGAACTAAATCTGAAACTTGCAAACCTCTCATAGACTTAGGCCC  300

seq1  CTCTAAAATGGAGTTTTGTTTATGACACTTGCAAAATTCCTAGTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATGGAGTTTTGTTTATGACACTTGCAAAATTCCTAGTGTTTTA  350

seq1  TAGTGGAGAGCACAATGACACTCAGACTATTAAGGATGCAGTTCACATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGAGCACAATGACACTCAGACTATTAAGGATGCAGTTCACATCT  400

seq1  GCTTCCCAGAGAATTTTTTTTAAGAAAATACCTGTGTTGTTTGTTTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCAGAGAATTTTTTTTAAGAAAATACCTGTGTTGTTTGTTTATCC  450

seq1  CTTCTATCCTGACATTAATAATTTGGCAGATCAAACCTTTTCACTCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCCTGACATTAATAATTTGGCAGATCAAACCTTTTCACTCAAAT  500

seq1  CTTTATCAATCCAGAATTGTTTTAATCAGAGTAAACAGAGAGCAGCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAATCCAGAATTGTTTTAATCAGAGTAAACAGAGAGCAGCCTAA  550

seq1  TACTGGCTGAATATTTGAATTC  572
      ||||||||||||||||||||||
seq2  TACTGGCTGAATATTTGAATTC  572


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