BAC Information

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BAC

Clone NameB6Ng01-248J09
Chromosome6 (Build37)
Map Location 10,900,029 - 11,011,538
singlet/doubletdoublet
Overlap geneAA545190
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneNdufa4, Phf14, LOC100040844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J09.bB6Ng01-248J09.g
ACCGA056624GA056625
length9731,135
definitionB6Ng01-248J09.b B6Ng01-248J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,900,029 - 10,900,741)(11,010,393 - 11,011,538)
sequence
gaattccagattcagtgagaaagtttatcttaaaaattaagagataatca
ataaatgataacttactcaacatcaacctgttgtctccatattcatattc
caatgtgcacacaacatttgccacccacatgtgcacatacacacatataa
tgtacacacactcctaagtgaaaagaaaaactttattttcatttatattg
gttattttacttatattttacttatttacatttcaaatgttatcttcctt
cccagtttcccctctgcaagtcccctattatctcatccccctgcatctat
gagggtgctctcccacctgcccacccactcctgcttcagcaacttaatat
tcccctatcctgggtcatcaaactgccacagaaccaaggaactcccctcc
cagtgatgccagaaaaggaaattcaatgttatatatccagctggagccat
gggtacctcctgagtactctttggttggtgttttagttcttggtagcttt
gggggttctgattggttgatactgttgttcttcctatgagattgcaaacc
ccttctgctcctacaattcttgccctaactttcccattggggtatccact
ctcagtccaatgttctgctgtgtacatctgcatctgtattggtccagttc
tggcagagcctctcaagggacagtcatactggctgctccactctttgtcc
ctgcattttctttggacaggaggaattctgaatgggggtgactccatccc
tcaactggggaccgtgcctatccactggatatggtctctacagtattttc
aacaaatggtgctggttcaactgggtcagcatgtagaaaaatgcaaattg
gccttttcttatctccttgtacaaagctcaattccaagtggatcaaggga
cctcacataaaaccaaatgaatctatagaagggaagtgggaaatagcctt
gaccatattagcacataggggaa

gaattcacattttagtgagtagcgtttaagtacattaattggttacactg
taatttctggctagactcatatgaacaaagaactgttactgatggctcat
tcacagagttattcccttttgtgtagttggctcagagattccctccagat
ttctctatcatcacctacacagctctcccactggctataaaatactgcag
cagcttgtaggtaattgatcagacaagtgaactgtaaaatattcattttc
tacttcaacagccagataaatctcttgggaagaggatgaaaatattgctt
atgcacatcagggtcagtagagtaatagcaaggttgctgataagcagggg
tccactacagagctaatacttaattcgctgctgtgctccagacagagcaa
gcagcctccttttgcctgaagctacaagtctcattatatactgaacccga
ggcatcaacatcagtgccccagtcctgttgctcaaaggatggagcttcct
cttttaattaatcaggttcatctcagcattacaagccaaatagccaatta
acacttagctactgtaaccaaaatgctaaacactaaattgctaatgaaat
gagaatggaggaaggtaactgtgcaaaggatgctgggaatgcaggttgac
tgaattcttaatagcacctgtgttctttttttatgcctcttctttggttt
ctctgccaacttttcatttgaatgccaagctgttttaattgaaagttgtc
agacctagactacattcagaatagacaagccatggcaaaagcaataaatt
atttagttttctttgtatagttgcaatagtaaaaaaaaaataataataat
gctaagaggcatttgtcctgcttttttccctgtttccattctcaaccagt
tttatcaagatgtctcaatcagtgaaatataaatttgaacccaagaattt
tttagaagcataaattttcttaagaaacttgtgcagattttaaaaaacag
gatccatgggtgccttaagatgttacagtcctgtatatcctggtttctcc
cctctctctttatctgtagaatgctgcatccttcttttaatgcaaggagt
gagaaactggcaaaacagttcctcatggctcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10900029_10900741
seq2: B6Ng01-248J09.b_49_761

seq1  GAATTCCAGATTCAGTGAGAAAGTTTATCTTAAAAATTAAGAGATAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTCAGTGAGAAAGTTTATCTTAAAAATTAAGAGATAATCA  50

seq1  ATAAATGATAACTTACTCAACATCAACCTGTTGTCTCCATATTCATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATAACTTACTCAACATCAACCTGTTGTCTCCATATTCATATTC  100

seq1  CAATGTGCACACAACATTTGCCACCCACATGTGCACATACACACATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCACACAACATTTGCCACCCACATGTGCACATACACACATATAA  150

seq1  TGTACACACACTCCTAAGTGAAAAGAAAAACTTTATTTTCATTTATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACACTCCTAAGTGAAAAGAAAAACTTTATTTTCATTTATATTG  200

seq1  GTTATTTTACTTATATTTTACTTATTTACATTTCAAATGTTATCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTACTTATATTTTACTTATTTACATTTCAAATGTTATCTTCCTT  250

seq1  CCCAGTTTCCCCTCTGCAAGTCCCCTATTATCTCATCCCCCTGCATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTCCCCTCTGCAAGTCCCCTATTATCTCATCCCCCTGCATCTAT  300

seq1  GAGGGTGCTCTCCCACCTGCCCACCCACTCCTGCTTCAGCAACTTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCTCTCCCACCTGCCCACCCACTCCTGCTTCAGCAACTTAATAT  350

seq1  TCCCCTATCCTGGGTCATCAAACTGCCACAGAACCAAGGAACTCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATCCTGGGTCATCAAACTGCCACAGAACCAAGGAACTCCCCTCC  400

seq1  CAGTGATGCCAGAAAAGGAAATTCAATGTTATATATCCAGCTGGAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGCCAGAAAAGGAAATTCAATGTTATATATCCAGCTGGAGCCAT  450

seq1  GGGTACCTCCTGAGTACTCTTTGGTTGGTGTTTTAGTTCTTGGTAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCTCCTGAGTACTCTTTGGTTGGTGTTTTAGTTCTTGGTAGCTTT  500

seq1  GGGGGTTCTGATTGGTTGATACTGTTGTTCTTCCTATGAGATTGCAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCTGATTGGTTGATACTGTTGTTCTTCCTATGAGATTGCAAACC  550

seq1  CCTTCTGCTCCTACAATTCTTGCCCTAACTTTCCCATTGGGGTATCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCTCCTACAATTCTTGCCCTAACTTTCCCATTGGGGTATCCACT  600

seq1  CTCAGTCCAATGTTCTGCTGTGTACATCTGCATCTGTATTGGTCCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCAATGTTCTGCTGTGTACATCTGCATCTGTATTGGTCCAGTTC  650

seq1  TGGCAGAGCCTCTCAAGGGACAGTCATACTGGCTGCTCCACTCTTTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGCCTCTCAAGGGACAGTCATACTGGCTGCTCCACTCTTTGTCC  700

seq1  CTGCATTTTCTTT  713
      |||||||||||||
seq2  CTGCATTTTCTTT  713


seq1: chr6_11010393_11011538
seq2: B6Ng01-248J09.g_68_1202 (reverse)

seq1  CAGTGAGCAATGA-GAACTGTTTTTCCCATTTTCCTCACTTCCTTGGGCA  49
      |||||||| |||| |||||||||| ||  |||  ||||| |||||  |||
seq2  CAGTGAGCCATGAGGAACTGTTTTGCCAGTTT--CTCAC-TCCTT--GCA  45

seq1  TTAAAAAGAAGGGAATGCAAGCATTTTCTACAGATAAAGGAAGAGAGGGG  99
      || |||||||||  |||| ||||  ||||||||||||||  |||||||||
seq2  TT-AAAAGAAGG--ATGC-AGCA--TTCTACAGATAAAG--AGAGAGGGG  87

seq1  GAGGAAACCAAGAAATAATACAGAACTGT-ACATCTT-AGGCA-CCATGG  146
         ||||||| ||    |||||| ||||| ||||||| ||||| ||||||
seq2  --AGAAACCAGGA---TATACAGGACTGTAACATCTTAAGGCACCCATGG  132

seq1  ATCCTGTTTTTTAAAATCTGCACAAGTTTCTTAAG-AAATTTATGCTTCT  195
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCCTGTTTTTTAAAATCTGCACAAGTTTCTTAAGAAAATTTATGCTTCT  182

seq1  AAAAAATTCTTGGGTTCAAATTTATATTTCACTGATTGAGACATCTTGAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCTTGGGTTCAAATTTATATTTCACTGATTGAGACATCTTGAT  232

seq1  -AAACTGGTTGAGAATGGAAACAGGGAAAAAAGCAGGACAAATGCCTCTT  294
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGTTGAGAATGGAAACAGGGAAAAAAGCAGGACAAATGCCTCTT  282

seq1  AGCATTATTATTA-TTTTTTTTTACTATTGCAACTATACAAAGAAAACTA  343
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTATTATTTTTTTTTTACTATTGCAACTATACAAAGAAAACTA  332

seq1  AATAATTTATTGCTTTTGCCATGGCTTGTCTATTCTGAATGTAGTCTAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTATTGCTTTTGCCATGGCTTGTCTATTCTGAATGTAGTCTAGG  382

seq1  TCTGACAACTTTCAATTAAAACAGCTTGGCATTCAAATGAAAAGTTGGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAACTTTCAATTAAAACAGCTTGGCATTCAAATGAAAAGTTGGCA  432

seq1  GAGAAACCAAAGAAGAGGCATAAAAAAAGAACACAGGTGCTATTAAGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCAAAGAAGAGGCATAAAAAAAGAACACAGGTGCTATTAAGAAT  482

seq1  TCAGTCAACCTGCATTCCCAGCATCCTTTGCACAGTTACCTTCCTCCATT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAACCTGCATTCCCAGCATCCTTTGCACAGTTACCTTCCTCCATT  532

seq1  CTCATTTCATTAGCAATTTAGTGTTTAGCATTTTGGTTACAGTAGCTAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCATTAGCAATTTAGTGTTTAGCATTTTGGTTACAGTAGCTAAG  582

seq1  TGTTAATTGGCTATTTGGCTTGTAATGCTGAGATGAACCTGATTAATTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTGGCTATTTGGCTTGTAATGCTGAGATGAACCTGATTAATTAA  632

seq1  AAGAGGAAGCTCCATCCTTTGAGCAACAGGACTGGGGCACTGATGTTGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGCTCCATCCTTTGAGCAACAGGACTGGGGCACTGATGTTGAT  682

seq1  GCCTCGGGTTCAGTATATAATGAGACTTGTAGCTTCAGGCAAAAGGAGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGGTTCAGTATATAATGAGACTTGTAGCTTCAGGCAAAAGGAGGC  732

seq1  TGCTTGCTCTGTCTGGAGCACAGCAGCGAATTAAGTATTAGCTCTGTAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCTGTCTGGAGCACAGCAGCGAATTAAGTATTAGCTCTGTAGT  782

seq1  GGACCCCTGCTTATCAGCAACCTTGCTATTACTCTACTGACCCTGATGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCTGCTTATCAGCAACCTTGCTATTACTCTACTGACCCTGATGTG  832

seq1  CATAAGCAATATTTTCATCCTCTTCCCAAGAGATTTATCTGGCTGTTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAATATTTTCATCCTCTTCCCAAGAGATTTATCTGGCTGTTGAA  882

seq1  GTAGAAAATGAATATTTTACAGTTCACTTGTCTGATCAATTACCTACAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATGAATATTTTACAGTTCACTTGTCTGATCAATTACCTACAAG  932

seq1  CTGCTGCAGTATTTTATAGCCAGTGGGAGAGCTGTGTAGGTGATGATAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAGTATTTTATAGCCAGTGGGAGAGCTGTGTAGGTGATGATAGA  982

seq1  GAAATCTGGAGGGAATCTCTGAGCCAACTACACAAAAGGGAATAACTCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGGAGGGAATCTCTGAGCCAACTACACAAAAGGGAATAACTCTG  1032

seq1  TGAATGAGCCATCAGTAACAGTTCTTTGTTCATATGAGTCTAGCCAGAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGCCATCAGTAACAGTTCTTTGTTCATATGAGTCTAGCCAGAAA  1082

seq1  TTACAGTGTAACCAATTAATGTACTTAAACGCTACTCACTAAAATGTGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTAACCAATTAATGTACTTAAACGCTACTCACTAAAATGTGAA  1132

seq1  TTC  1146
      |||
seq2  TTC  1135


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