BAC Information

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BAC

Clone NameB6Ng01-248J21
Chromosome6 (Build37)
Map Location 15,990,361 - 16,135,293
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxp2, Mdfic
Downstream geneLOC100041116, Tcfec, EG435881, Tes, EG232599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J21.bB6Ng01-248J21.g
ACCGA056646GA056647
length1,1921,131
definitionB6Ng01-248J21.b B6Ng01-248J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,134,108 - 16,135,293)(15,990,361 - 15,991,515)
sequence
gaattcagttgaaacaagtaaaagaggtggtgagacccaggcagagatgg
gaaaggtttttattcctttttggatgaaagctcttgttgaagacatcgca
gctggacaacagaagggactgaactagtatgtactcttcatatctggaag
cagaagcaggagtaaaatatctaagacctaagaacattagcagaaacatc
ctcagaaagtacacagtgctttctttcaaaaatttcctggttcctccctg
ccagtacttaattcatttcagaataaaaataagtattttcctcatacttg
tagcatagctctttcagttttgattccatgttctttacctcaaagtctcc
ttgtacattcatgatatacaactcctcttcctcctcttcctcaaatttca
gagatgggtactgtattgacatgatttctgccctaccctatactccaccc
aagtcctcccatgtcccctcctttcctcttaaatttactgcttatacttt
aattacattcttacacatacatacacacatacatacatacacacacacac
acacactctctctctcacacacacatacaaatgcagacgtgagtatataa
atacaacctgatggatcctttttagcattgttcatgtgtatgagtttggg
gctatccatttggatatccataggtaacttatcaggggctttatccccag
agatgagtgattctccatctctaattgatactgaagtgctatgttttcgt
gaaataaatattatttaacacataatgtcagtttcatattatttcctttt
aaaaatcacaaagtatggatatgattagacacagtggagattgctggggc
ccatagaaaggcatttgccattcagatactttggatgttattgctgcttt
ctcatctggagagatgaagcctggatgtgtgcaactgaaatcttaggaga
aaagtaaagacctgaagacgtaaaggacctaagctgcttcattctgtcag
ttcttggcagtgtgtgtttaatgaaattaccttttcagttttcccagaac
acaagattgtgtatttgttaatttgacaatgaatctccaattcatgcttc
ctattttatgtgttcttcagtggatcaatactggagcaccactatatccg
ttcttactctgatagcccgtgtttgtccctctctcgtgggta

gaattccatgagacattccttcttatctccaagggactgaagtttgcata
gtagcaaaaaagtagacacagccaggacacaatctttgggggttagaaat
cagaggataattcagtctatagccatagaatctgctgtctttcttttgtt
tgatttccccttcttttgtgcattttctccaattgaaaatttttattgat
tatcagtaattccttacatcccagaaaaaaacactttgttgtttgttatt
ggaaatacctttatgtttattataatcatcaataaagagtttttatgttt
atatattaattattttaaagctcccttgaatccatttgaataattttgta
tatttaaattagaaacagtcctctctatatatgtaatcttctaggtttcc
tcgtatgtactacatgaattttttatttaataagatctctttttgaataa
agtggtaacacaataagtctcaaaacatgtcttagttaatggtcatagct
tgttttcaacagcttattatggaaaaaatcgaaatagagtgaaacataca
ggaaccatggtaataaatattcacatattctcactccacattaaataatt
gtacacattttaccatatttactttaaatatttatttttctttctacagt
taaagatactttccctctttaatacacctcacttaacatatcatcaaact
attctatttaggaaatattttcaaaacctcttttggtcatattattggtt
tcatttgtgatttcagtaaccatttccagcttgttagctttcacatttac
atatgattctaagcaaacatcataaacaactcattagtgaagcgtactcc
tacccagtgcttctgatgctgcagaacgtcttccctggagattataattt
ttactttcatttatttatataacttgtgatttgtctattcactgggcttt
tgaaaaagtatccctttcagtatagttcgatcatactcctcccgttgcat
gtgtacatcctctctatctaccaaatcatgttccttttcccaaagaagac
cttaagaaaccaaacagaaaccacaaaccttacctaagacaatattcgta
caattcataatgggtgtacgcacacacatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16134108_16135293
seq2: B6Ng01-248J21.b_48_1239 (reverse)

seq1  TACCC---AGAGAGG--CAAACACGGGCTATTCAGAAGTTAAGACAGATA  45
      |||||   |||||||  ||||||||||||| |||| ||| |  || ||||
seq2  TACCCACGAGAGAGGGACAAACACGGGCTA-TCAG-AGTAAGAACGGATA  48

seq1  TTAGTGGTGCCTCCAGTA-TGAACCACTGAAGAACACAT-AAATAGGAAA  93
       |||||||| |||||||| ||| |||||||||||||||| ||||||| ||
seq2  -TAGTGGTG-CTCCAGTATTGATCCACTGAAGAACACATAAAATAGG-AA  95

seq1  GCATGAAATGGAAGATCA-TGTCAAATTAACCAAATACACAATCTTTGTG  142
      ||||||| ||||   ||| ||||||||||| ||||||||||||| |||||
seq2  GCATGAATTGGAGATTCATTGTCAAATTAA-CAAATACACAATC-TTGTG  143

seq1  TTCCGGGAAAAACTG-AAAGGTAATTTCA-TAAACACACACTGCCAAGAA  190
      ||| ||| ||||||| ||||||||||||| ||||||||||||||||||||
seq2  TTCTGGG-AAAACTGAAAAGGTAATTTCATTAAACACACACTGCCAAGAA  192

seq1  CTGACAGAATG-AGCAGCTTAGGT-CTTTACGTCTTCAGGTCTTTAC-TT  237
      ||||||||||| |||||||||||| |||||||||||||||||||||| ||
seq2  CTGACAGAATGAAGCAGCTTAGGTCCTTTACGTCTTCAGGTCTTTACTTT  242

seq1  TCTCCTAAAGATTTCAGTTGCACACATCCAGGCTTCATCTCTCCAGATGA  287
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCT-AAGATTTCAGTTGCACACATCCAGGCTTCATCTCTCCAGATGA  291

seq1  GAAAGCAGCAATAACATCCAAAGTATCTGAATGGC-AATGCC-TTCTATG  335
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  GAAAGCAGCAATAACATCCAAAGTATCTGAATGGCAAATGCCTTTCTATG  341

seq1  GGCCCCAGCAATCTCCACTGTGTCTAATCATATCCATACTTTGTGATTTT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGCAATCTCCACTGTGTCTAATCATATCCATACTTTGTGATTTT  391

seq1  TAAAAGGAAATAATATGAAACTGACATTATGTGTTAAATAATATTTATTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAATAATATGAAACTGACATTATGTGTTAAATAATATTTATTT  441

seq1  CACGAAAACATAGCACTTCAGTATCAATTAGAGATGGAGAATCACTCATC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAACATAGCACTTCAGTATCAATTAGAGATGGAGAATCACTCATC  491

seq1  TCTGGGGATAAAGCCCCTGATAAGTTACCTATGGATATCCAAATGGATAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGATAAAGCCCCTGATAAGTTACCTATGGATATCCAAATGGATAG  541

seq1  CCCCAAACTCATACACATGAACAATGCTAAAAAGGATCCATCAGGTTGTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACTCATACACATGAACAATGCTAAAAAGGATCCATCAGGTTGTA  591

seq1  TTTATATACTCACGTCTGCATTTGTATGTGTGTGTGAGAGAGAGAGTGTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACTCACGTCTGCATTTGTATGTGTGTGTGAGAGAGAGAGTGTG  641

seq1  TGTGTGTGTGTGTATGTATGTATGTGTGTATGTATGTGTAAGAATGTAAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTATGTATGTATGTGTGTATGTATGTGTAAGAATGTAAT  691

seq1  TAAAGTATAAGCAGTAAATTTAAGAGGAAAGGAGGGGACATGGGAGGACT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATAAGCAGTAAATTTAAGAGGAAAGGAGGGGACATGGGAGGACT  741

seq1  TGGGTGGAGTATAGGGTAGGGCAGAAATCATGTCAATACAGTACCCATCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGAGTATAGGGTAGGGCAGAAATCATGTCAATACAGTACCCATCT  791

seq1  CTGAAATTTGAGGAAGAGGAGGAAGAGGAGTTGTATATCATGAATGTACA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTGAGGAAGAGGAGGAAGAGGAGTTGTATATCATGAATGTACA  841

seq1  AGGAGACTTTGAGGTAAAGAACATGGAATCAAAACTGAAAGAGCTATGCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTTGAGGTAAAGAACATGGAATCAAAACTGAAAGAGCTATGCT  891

seq1  ACAAGTATGAGGAAAATACTTATTTTTATTCTGAAATGAATTAAGTACTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATGAGGAAAATACTTATTTTTATTCTGAAATGAATTAAGTACTG  941

seq1  GCAGGGAGGAACCAGGAAATTTTTGAAAGAAAGCACTGTGTACTTTCTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGAACCAGGAAATTTTTGAAAGAAAGCACTGTGTACTTTCTGA  991

seq1  GGATGTTTCTGCTAATGTTCTTAGGTCTTAGATATTTTACTCCTGCTTCT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTCTGCTAATGTTCTTAGGTCTTAGATATTTTACTCCTGCTTCT  1041

seq1  GCTTCCAGATATGAAGAGTACATACTAGTTCAGTCCCTTCTGTTGTCCAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGATATGAAGAGTACATACTAGTTCAGTCCCTTCTGTTGTCCAG  1091

seq1  CTGCGATGTCTTCAACAAGAGCTTTCATCCAAAAAGGAATAAAAACCTTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATGTCTTCAACAAGAGCTTTCATCCAAAAAGGAATAAAAACCTTT  1141

seq1  CCCATCTCTGCCTGGGTCTCACCACCTCTTTTACTTGTTTCAACTGAATT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTGCCTGGGTCTCACCACCTCTTTTACTTGTTTCAACTGAATT  1191

seq1  C  1186
      |
seq2  C  1192


seq1: chr6_15990361_15991515
seq2: B6Ng01-248J21.g_66_1196

seq1  GAATTCCATGAGACATTCCTTCTTATCTCCAAGGGACTGAAGTTTGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGACATTCCTTCTTATCTCCAAGGGACTGAAGTTTGCATA  50

seq1  GTAGCAAAAAAGTAGACACAGCCAGGACACAATCTTTGGGGGTTAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAAAAGTAGACACAGCCAGGACACAATCTTTGGGGGTTAGAAAT  100

seq1  CAGAGGATAATTCAGTCTATAGCCATAGAATCTGCTGTCTTTCTTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATAATTCAGTCTATAGCCATAGAATCTGCTGTCTTTCTTTTGTT  150

seq1  TGATTTCCCCTTCTTTTGTGCATTTTCTCCAATTGAAAATTTTTATTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCCTTCTTTTGTGCATTTTCTCCAATTGAAAATTTTTATTGAT  200

seq1  TATCAGTAATTCCTTACATCCCAGAAAAAAACACTTTGTTGTTTGTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTAATTCCTTACATCCCAGAAAAAAACACTTTGTTGTTTGTTATT  250

seq1  GGAAATACCTTTATGTTTATTATAATCATCAATAAAGAGTTTTTATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACCTTTATGTTTATTATAATCATCAATAAAGAGTTTTTATGTTT  300

seq1  ATATATTAATTATTTTAAAGCTCCCTTGAATCCATTTGAATAATTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAATTATTTTAAAGCTCCCTTGAATCCATTTGAATAATTTTGTA  350

seq1  TATTTAAATTAGAAACAGTCCTCTCTATATATGTAATCTTCTAGGTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATTAGAAACAGTCCTCTCTATATATGTAATCTTCTAGGTTTCC  400

seq1  TCGTATGTACTACATGAATTTTTTATTTAATAAGATCTCTTTTTGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATGTACTACATGAATTTTTTATTTAATAAGATCTCTTTTTGAATAA  450

seq1  AGTGGTAACACAATAAGTCTCAAAACATGTCTTAGTTAATGGTCATAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAACACAATAAGTCTCAAAACATGTCTTAGTTAATGGTCATAGCT  500

seq1  TGTTTTCAACAGCTTATTATGGAAAAAATCGAAATAGAGTGAAACATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAACAGCTTATTATGGAAAAAATCGAAATAGAGTGAAACATACA  550

seq1  GGAACCATGGTAATAAATATTCACATATTCTCACTCCACATTAAATAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGGTAATAAATATTCACATATTCTCACTCCACATTAAATAATT  600

seq1  GTACACATTTTACCATATTTACTTTAAATATTTATTTTTCTTTCTACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATTTTACCATATTTACTTTAAATATTTATTTTTCTTTCTACAGT  650

seq1  TAAAGATACTTTCCCTCTTTAATACACCTCACTTAACATATCATCAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATACTTTCCCTCTTTAATACACCTCACTTAACATATCATCAAACT  700

seq1  ATTCTATTTAGGAAATATTTTCAAAACCTCTTTTGGTCATATTATTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTAGGAAATATTTTCAAAACCTCTTTTGGTCATATTATTGGTT  750

seq1  TCATTTGTGATTTCAGTAACCATTTCCAGCTTGTTAGCTTTCACATTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTGATTTCAGTAACCATTTCCAGCTTGTTAGCTTTCACATTTAC  800

seq1  ATATGATTCTAAGCAAACATCATAAACAACTCATTAGTGAAGCGTACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTCTAAGCAAACATCATAAACAACTCATTAGTGAAGCGTACTCC  850

seq1  TACCCAGTGCTTCTGATGCTGCAGAACGTCTTCCCTGGAGATTATAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTGCTTCTGATGCTGCAGAACGTCTTCCCTGGAGATTATAATTT  900

seq1  TTACTTTCATTTTATTTATATAACTTGTGATTTGTCTATTCACTGGGCTT  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCA-TTTATTTATATAACTTGTGATTTGTCTATTCACTGGGCTT  949

seq1  TTGAAAAAGTTATCCC-TTCAGTATAGTTCGATCATACTTCCTCCCCTTT  999
      ||||||||| |||||| ||||||||||||||||||||| |||| ||| ||
seq2  TTGAAAAAG-TATCCCTTTCAGTATAGTTCGATCATAC-TCCT-CCCGTT  996

seq1  GCCAATGTGTACATCCTCTCTATCTACCCAAATTCATGTTCTTTTTTCCC  1049
      ||  ||||||||||||||||||||||||  || ||||||||  |||||||
seq2  GC--ATGTGTACATCCTCTCTATCTACC--AAATCATGTTC-CTTTTCCC  1041

seq1  AAAGAAAGACCCTAAAGGAAAACAAAAACAGAAAACCACCAAAACACTAT  1099
      |||| |||||| |||  |||| |  |||||| |||||||  |||| || |
seq2  AAAG-AAGACCTTAA--GAAACC--AAACAG-AAACCAC--AAAC-CT-T  1081

seq1  ACTATAGACAATATATTTCTGTACATATCTATATATGTGTGTACGCACAC  1149
      ||   ||||||||   ||| ||||| ||  ||| ||| ||||||||||||
seq2  ACCTAAGACAATA---TTC-GTACA-ATTCATA-ATGGGTGTACGCACAC  1125

seq1  ACATGC  1155
      ||||||
seq2  ACATGC  1131


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