BAC Information

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BAC

Clone NameB6Ng01-249C12
Chromosome6 (Build37)
Map Location 119,699,042 - 119,700,214
singlet/doubletsinglet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249C12.bB6Ng01-249C12.g
ACCGA057048GA057049
length7331,185
definitionB6Ng01-249C12.b B6Ng01-249C12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaaagatggcacagcatacccaaacttatgggacacaat
gaaagcagtgctaagaggaaaattcatagcagtcagtgcccttgtaaaga
aattggagagctcctacacgagcagcttaacagcacacctgagaacccta
gaacagaaagaagcaaattcacccaataggagtagatggcaagaaataat
caaactcaggctgaagtcaaccaaatagaaacaaaaagaacaatacaaag
aatcaacaaaaccaaatgttggttctttgagagaatcaacaagatagata
aacccctggccaaactaactaaagcagacagagaacttatccaaattaac
aaaatcagaaatgagaatggcgacataaccacagaaacggaaggaattaa
aaaaatcatcaggctgggtgtggtggcacatgcctttaatcccagcactc
aggaggtagaggcaggcggatttctgagttcaaggccagcctggtctaca
aagtgagtttgaggacagccagggctacacagagaaaccctgtcttgaaa
aacaaaaaaacaaaaacaaaaacaaaacaaaacaaaaaaaaatcagatcc
tactacaaaagtctatacttaacaaaactggaaaatctagatgaaatgaa
caattttatctaaacaggctcatattcctctaaggaaatagaagaggtca
ttaacaaccttccccaacaacaacaacaatgac
gaattcaagaaagggacttggggggcatgtaaaaaaaatgaaaatgggag
agaaggtgacagtaatcaaaatgtacaatatgtattatggaactgttaaa
atagcacagacttcaaaaatgattctagtaacaagccaggatgttaattc
actatcaaatgtctagcctaattggagtgactgaaaactacagaatggta
tgagcaaagggaaagagaaacagcaaagcgcagtctgcaggaaccttcta
gaagccaccccacccccaccccatccccgagatcaaagtcttcctcctcc
gtgtgctgaagcttgatgtgccagtgttcattactggggtgattggaaac
gagacagcacatctgaccaaatctgtgggttaatccctgaaccacactgt
gatggcaccgctgaggggtcagactgagaggtgggatctcagcagaggaa
gcagatcactaaggacacgatctgagatgaacactttgtcctcgcttcta
tctgctgctttcctggtggccaggatgttctgcctcactaaacactagaa
gcattggaatcatctaaccttggactgtaacttttcaaactacaaagcta
aataaatcttttcctacttcagtactgtttatcttaggtatttggttata
actgcaataccttaaaacaataaaaaataaaaataactctaaattctata
ttgtcactataaatccttaactttaaaaaaagaaaaagaaaaaaaaaagg
cactcagagctatctacagtgttcctatgtaaagaaaaacaataatggta
actttttcttcaacctttttcaactgtgactccatttttaggcactcttc
cttcttctgctcaagagcaatttctagggtcttgagccgcgagtcctttt
tgagtcctgaggaagccagggaaagaagcatgctctttgaaatccaagaa
aagaagcctaaaagaagcaaggcaatagtacaataaaatactgtgaaata
aaaatgtggatttaattttttaaaaataataattcaatagtaattggacg
ttccatttcaagaaacatcatgaactataaaacttccagaaacactggcc
ttagctttcgatttcagttaaaagcaaggtggaattctcaagtactaata
aaaagagtctaaaaacgccgtgggatgaaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119699042_119700214
seq2: B6Ng01-249C12.g_65_1249

seq1  GAATTCAAGAAAGGGACTTGGGGGGCATGTAAAAAAAATGAAAATGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAGGGACTTGGGGGGCATGTAAAAAAAATGAAAATGGGAG  50

seq1  AGAAGGTGACAGTAATCAAAATGTACAATATGTATTATGGAACTGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGACAGTAATCAAAATGTACAATATGTATTATGGAACTGTTAAA  100

seq1  ATAGCACAGACTTCAAAAATGATTCTAGTAACAAGCCAGGATGTTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACAGACTTCAAAAATGATTCTAGTAACAAGCCAGGATGTTAATTC  150

seq1  ACTATCAAATGTCTAGCCTAATTGGAGTGACTGAAAACTACAGAATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAAATGTCTAGCCTAATTGGAGTGACTGAAAACTACAGAATGGTA  200

seq1  TGAGCAAAGGGAAAGAGAAACAGCAAAGCGCAGTCTGCAGGAACCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAGGGAAAGAGAAACAGCAAAGCGCAGTCTGCAGGAACCTTCTA  250

seq1  GAAGCCACCCCACCCCCACCCCATCCCCGAGATCAAAGTCTTCCTCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACCCCACCCCCACCCCATCCCCGAGATCAAAGTCTTCCTCCTCC  300

seq1  GTGTGCTGAAGCTTGATGTGCCAGTGTTCATTACTGGGGTGATTGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGAAGCTTGATGTGCCAGTGTTCATTACTGGGGTGATTGGAAAC  350

seq1  GAGACAGCACATCTGACCAAATCTGTGGGTTAATCCCTGAACCACACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCACATCTGACCAAATCTGTGGGTTAATCCCTGAACCACACTGT  400

seq1  GATGGCACCGCTGAGGGGTCAGACTGAGAGGTGGGATCTCAGCAGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACCGCTGAGGGGTCAGACTGAGAGGTGGGATCTCAGCAGAGGAA  450

seq1  GCAGATCACTAAGGACACGATCTGAGATGAACACTTTGTCCTCGCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCACTAAGGACACGATCTGAGATGAACACTTTGTCCTCGCTTCTA  500

seq1  TCTGCTGCTTTCCTGGTGGCCAGGATGTTCTGCCTCACTAAACACTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTTTCCTGGTGGCCAGGATGTTCTGCCTCACTAAACACTAGAA  550

seq1  GCATTGGAATCATCTAACCTTGGACTGTAACTTTTCAAACTACAAAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGAATCATCTAACCTTGGACTGTAACTTTTCAAACTACAAAGCTA  600

seq1  AATAAATCTTTTCCTACTTCAGTACTGTTTATCTTAGGTATTTGGTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTTCCTACTTCAGTACTGTTTATCTTAGGTATTTGGTTATA  650

seq1  ACTGCAATACCTTAAAACAATAAAAAATAAAAATAACTCTAAATTCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATACCTTAAAACAATAAAAAATAAAAATAACTCTAAATTCTATA  700

seq1  TTGTCACTATAAATCCTTAACTTTAAAAAAAGAAAAAGAAAAAAAAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTATAAATCCTTAACTTTAAAAAAAGAAAAAGAAAAAAAAAAGG  750

seq1  CACTCAGAGCTATCTACAGTGTTCCTATGTAAAGAAAAACAATAATGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAGCTATCTACAGTGTTCCTATGTAAAGAAAAACAATAATGGTA  800

seq1  ACTTTTTCTTCAACCTTTTTCAACTGTGACTCCATTTTTAGGCACTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTTCAACCTTTTTCAACTGTGACTCCATTTTTAGGCACTCTTC  850

seq1  CTTCTTCTGCTCAAGAGCAATTTCTAGGGTCTTGAGCCGCGAGTCCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGCTCAAGAGCAATTTCTAGGGTCTTGAGCCGCGAGTCCTTTT  900

seq1  TGAGTCCTGAGGAAGCCAGGG-AAGAAGCATGCTCTTTGATATCCAAG-A  948
      ||||||||||||||||||||| |||||||||||||||||| ||||||| |
seq2  TGAGTCCTGAGGAAGCCAGGGAAAGAAGCATGCTCTTTGAAATCCAAGAA  950

seq1  GAGAAGCCTAAAAGAAGCAAGGC-ATAGTTACAAT-AAATACTGTGAAAT  996
       |||||||||||||||||||||| |||| |||||| ||||||||||||||
seq2  AAGAAGCCTAAAAGAAGCAAGGCAATAG-TACAATAAAATACTGTGAAAT  999

seq1  -AAAATGTGGATTTAATTTTTTTAACATA--TATTC-ATAGTATTTGGAC  1042
       ||||||||||||||||||||| || |||   |||| |||||| ||||||
seq2  AAAAATGTGGATTTAATTTTTTAAAAATAATAATTCAATAGTAATTGGAC  1049

seq1  GTTTCCATTTCAAG-AACATCCATGAACTATAAAACTTCCAG--ACACTG  1089
      | |||||||||||| ||||| |||||||||||||||||||||  ||||||
seq2  G-TTCCATTTCAAGAAACAT-CATGAACTATAAAACTTCCAGAAACACTG  1097

seq1  G-CTTAGCTTTCAGATATCAGTTAAAAGC-AGGTGG-ATCCTC-AGTACT  1135
      | |||||||||| ||| |||||||||||| |||||| || ||| ||||||
seq2  GCCTTAGCTTTC-GATTTCAGTTAAAAGCAAGGTGGAATTCTCAAGTACT  1146

seq1  AAT--AAAGAGTCCTAAAAACGCCTGGGGATGAAACTCAG  1173
      |||  ||||||| |||||||||||  ||||||||||||||
seq2  AATAAAAAGAGT-CTAAAAACGCCGTGGGATGAAACTCAG  1185