BAC Information

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BAC

Clone NameB6Ng01-249D15
Chromosome6 (Build37)
Map Location 78,134,830 - 78,136,007
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, Lrrtm1, LOC668169
Downstream geneEG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249D15.bB6Ng01-249D15.g
ACCGA057102GA057103
length1,1921,211
definitionB6Ng01-249D15.b B6Ng01-249D15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcacagaagtcactgaataaaaaacattcagaggagcaaagga
gcatcactatagcctgggagattgcagggacgacagggatgtgaatccca
aagccccagttaccttgagccatgaaattctctttttatttaaaaactaa
caacttgagctacgttttgtggttaagtgtctgtgaacacacctagggga
aactagggcatgtagttaatcgcctggttcactggtgcctccaggatgca
tccattagaacactgaggtaactgacataaaatactgagtatgaattctc
tgataaaaatcccattagccttgaccctctgtgtccagcacagaggccat
ctttaggtcttttctagaaaactccccacacttgatttgaaagtctcctt
tgcttcttctcctgtctttctttaatttggtcatagtaatctgttaggag
ctgctggccttgtccatgcaaatactcaaaaatctggatattagtctcat
taaagacaggagatcaaattgcaactggcagagtcaaattacttgccgaa
cactactgaataccaacactatattaagataaaagccatgagatgtaaaa
tgaaaattcctcttagggatattagctggttcaccttgtctatcatttga
taggtcatgcatattgatagtgcagccttttttacacattctgattacac
agtaggtgggatacaggcatgggtgaaatgtaagttaatggacagcatta
ttccagcaaatggggatgattttgcaaagatgtttacaggtcttacatgc
agttctgtgcaactaattattcttctccacaaacagggactctgtacctg
gttttgtcaaccatatttgagccctgttattttgaagatctttagttcat
atacacatttgcttgcttttgaatcttattatttaatccagaatcagtgg
gattagggcccaatgagtgacccagatgatttttgatacatgataaaact
ttcctcctatagagtagatataacttaaaataagcatggaaataaggagg
aggaattattatggagtttgaaatatatattatctaatttaataactcta
gtaaatgtataacaaaccacaggactgaacacagggaagctgcatattgg
actggggtgggtgatgacttataaaattatcacctcacagaa

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctcctttagaagtggga
acaaaacacccatggaaggagttacagaaacaaagtatggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcttccaaatgctgacaccattgcatacactagcaagattttactgaa
aggacccagatgtagctgtctctttgtgagactatgccggggccctagca
aacacagaagtggatgcttcacagtcagcttatgggatggatcacagggc
tcccaatggaggagctagagaaagtaccctaaggagctaaagggatcttc
aaccctattaggtggacaacatttatgaactaaccagtaccccttgagct
cttgactcttagctgcatattgtttcaagatggcctagttcgccatcact
gaaaagaaaggctcattggacatgcgactttgtgtgcccgtacaggcaat
cctagcctacgggggaatggacggtaacgtcactacgctgagcgtgtagt
agtgacagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78134830_78136007
seq2: B6Ng01-249D15.b_43_1234 (reverse)

seq1  TTCTGTGAGGTGATATTTTATTAAGTCATCACCCA-CCCAGTTCAATATT  49
      ||||||||||||||| |||  |||||||||||||| |||||| ||||| |
seq2  TTCTGTGAGGTGATAATTTTATAAGTCATCACCCACCCCAGTCCAATA-T  49

seq1  GCA-CTTCCTTGTGTTCAGT-CTGT-GTTTG-TATACATTTACTA-AGTT  94
      ||| ||||| |||||||||| |||| ||||| ||||||||||||| ||||
seq2  GCAGCTTCCCTGTGTTCAGTCCTGTGGTTTGTTATACATTTACTAGAGTT  99

seq1  ATTAATTTTAGATATTATATTATTCAAACT-CAT-ATTATTCCTCCT-CT  141
      |||||  ||||||| |||||  |||||||| ||| || ||||||||| ||
seq2  ATTAA-ATTAGATAATATATATTTCAAACTCCATAATAATTCCTCCTCCT  148

seq1  TATTTCCATGC-TATTTTAAGGTATATCTACTCTATAGGAG--AAGTTTT  188
      ||||||||||| ||||||||| |||||||||||||||||||  |||||||
seq2  TATTTCCATGCTTATTTTAAGTTATATCTACTCTATAGGAGGAAAGTTTT  198

seq1  ATCATGTATC-AAAATCATCTGGGTCAACTCATT-GGCCCTAATCCCACT  236
      |||||||||| ||||||||||||||| ||||||| |||||||||||||||
seq2  ATCATGTATCAAAAATCATCTGGGTC-ACTCATTGGGCCCTAATCCCACT  247

seq1  GATTCTGGATTAAATAATAAGATTCAAAAGCAAGCAAATGTGTATATGAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGATTAAATAATAAGATTCAAAAGCAAGCAAATGTGTATATGAA  297

seq1  CTAAAGATCTTCAAAATAACAGGGCTC-AATATGGTTGAC-AAACCAGGT  334
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CTAAAGATCTTCAAAATAACAGGGCTCAAATATGGTTGACAAAACCAGGT  347

seq1  ACAGAGTCCCTGTTTGTGGAG-AGAATAATTAGTTGCACAGAACTGCATG  383
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGAGTCCCTGTTTGTGGAGAAGAATAATTAGTTGCACAGAACTGCATG  397

seq1  TAAGACCTGTAAACATCTTTGCAAAATCATCCCCATTTGCTGGAATAATG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTGTAAACATCTTTGCAAAATCATCCCCATTTGCTGGAATAATG  447

seq1  CTGTCCATTAACTTACATTTCACCCATGCCTGTATCCCACCTACTGTGTA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATTAACTTACATTTCACCCATGCCTGTATCCCACCTACTGTGTA  497

seq1  ATCAGAATGTGTAAAAAAGGCTGCACTATCAATATGCATGACCTATCAAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATGTGTAAAAAAGGCTGCACTATCAATATGCATGACCTATCAAA  547

seq1  TGATAGACAAGGTGAACCAGCTAATATCCCTAAGAGGAATTTTCATTTTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACAAGGTGAACCAGCTAATATCCCTAAGAGGAATTTTCATTTTA  597

seq1  CATCTCATGGCTTTTATCTTAATATAGTGTTGGTATTCAGTAGTGTTCGG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGGCTTTTATCTTAATATAGTGTTGGTATTCAGTAGTGTTCGG  647

seq1  CAAGTAATTTGACTCTGCCAGTTGCAATTTGATCTCCTGTCTTTAATGAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATTTGACTCTGCCAGTTGCAATTTGATCTCCTGTCTTTAATGAG  697

seq1  ACTAATATCCAGATTTTTGAGTATTTGCATGGACAAGGCCAGCAGCTCCT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATCCAGATTTTTGAGTATTTGCATGGACAAGGCCAGCAGCTCCT  747

seq1  AACAGATTACTATGACCAAATTAAAGAAAGACAGGAGAAGAAGCAAAGGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTACTATGACCAAATTAAAGAAAGACAGGAGAAGAAGCAAAGGA  797

seq1  GACTTTCAAATCAAGTGTGGGGAGTTTTCTAGAAAAGACCTAAAGATGGC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCAAATCAAGTGTGGGGAGTTTTCTAGAAAAGACCTAAAGATGGC  847

seq1  CTCTGTGCTGGACACAGAGGGTCAAGGCTAATGGGATTTTTATCAGAGAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTGGACACAGAGGGTCAAGGCTAATGGGATTTTTATCAGAGAA  897

seq1  TTCATACTCAGTATTTTATGTCAGTTACCTCAGTGTTCTAATGGATGCAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCAGTATTTTATGTCAGTTACCTCAGTGTTCTAATGGATGCAT  947

seq1  CCTGGAGGCACCAGTGAACCAGGCGATTAACTACATGCCCTAGTTTCCCC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGCACCAGTGAACCAGGCGATTAACTACATGCCCTAGTTTCCCC  997

seq1  TAGGTGTGTTCACAGACACTTAACCACAAAACGTAGCTCAAGTTGTTAGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGTTCACAGACACTTAACCACAAAACGTAGCTCAAGTTGTTAGT  1047

seq1  TTTTAAATAAAAAGAGAATTTCATGGCTCAAGGTAACTGGGGCTTTGGGA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAAAAGAGAATTTCATGGCTCAAGGTAACTGGGGCTTTGGGA  1097

seq1  TTCACATCCCTGTCGTCCCTGCAATCTCCCAGGCTATAGTGATGCTCCTT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCCCTGTCGTCCCTGCAATCTCCCAGGCTATAGTGATGCTCCTT  1147

seq1  TGCTCCTCTGAATGTTTTTTATTCAGTGACTTCTGTGATGAATTC  1178
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCTGAATGTTTTTTATTCAGTGACTTCTGTGATGAATTC  1192


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