BAC Information

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BAC

Clone NameB6Ng01-249G12
Chromosome6 (Build37)
Map Location 3,222,652 - 3,223,783
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039885, LOC100039896, LOC100040185
Downstream geneEG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249G12.bB6Ng01-249G12.g
ACCGA057237GA057238
length1,1331,159
definitionB6Ng01-249G12.b B6Ng01-249G12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcattaaaaaaatacttcttgtaactgaagcagattcttgaat
gatactggagtttgttcattattactgttctgtggagttgggctccaaat
taagacacagttccaagtttggagtgtcctcctgccctccagacaaggtt
tccctgtgtgtccctgtctgtcctggagctcactctgtagatgaggctga
cctcaaactcagtgatctgcatgcctctgcctctggactgctgggattaa
aggtatgcaccaccatgcccagctccaattgatacattcttacatagaac
aactattcccaggtgtcattagcatggactgactgagagagggtacgtgg
atccacactatttaatccatgttaggtgtggttttagcaagttgcgttag
cctttcagtcagtgattctcaaccttcctgatgctgagacctttggctga
gggatcttcctgtgcactgggtaaaggttgtctttatttttcacatcttg
atttctatgccaacggagagctaaacactgtgcagtattgttgttttttt
attaagcatcacctgtctcagtgtttcacaaacgttcctctccatctcct
cctgattggcttcataaagtgttgcgggcctatacatggggcaagagagg
caaggtggggcctccaggcagagatggggagtctgggaaggaatcagctg
ctagagatttgccagctagacatggaggaaggaatgggtgtcaggactga
aggagaggatatgagccacatgacagaacatagattagaatgaaccagct
aatgaagttatgtgagctagttgggaacaagcctagctataagacctaag
catttcataaataaatataagactgtgtcattttttgaagctggtgggtc
aaggcagtctagagatacaatttcttatattgtggtgaccccctgcccca
gccattaaattattttcctgcctacttcataaccaacattttgctactgt
tatagttgtaatgtgttttctatggtctatggcccttctacccttaagaa
atgacccccaggttgagtacacttgctttaaacaacattttggcatctct
actctaaggtgtcaaatgaacataaaaagaaaa

gaattctcacctgaggaataccgaatggctgagaagcaccagaaaaaaat
gttcagcatccttaattatcagggaattgcaagtcaaaacacccctgaga
ttccacctcacaccagccagaatggctaagatcaaaaattcaggtgacag
aagatgctggtgaggatgtggagaaagagggacactcctccattgttggt
ggaattgcaagcatgtacaaccactgtggaaatgagtctggttgttcctc
agaaaattggacatagtactaccagaggatccagcaatatctctcctggg
catatatccagaagatgttccaactggtaataaggacacatgctctacta
tgttcatagcagctttatttagaatagccagaagttagaaagcacccaga
tgtccctcaacagaggaatggatacagaaaatgtggtatatttacagaat
ggagtactactctgatactaaaaggaatgaatttatgaactgcctaggca
aatagatggacctggagggtgtcatcctgagcaaggtaatccaatcacaa
aagaattcacatgatatgtactctctgataagtagatattagccaaaaat
ttagcatacccattttacaagttgcaaaacacatgaaactcaagaagaac
gaagaccaaagtgtggtcactttgtcccttctttagaattgggaagaaaa
tacccacagaaggagttacagagaaaaagtttggagctgaaatgaaacaa
tggaccatatagaaactgttgcaccagggatccatcctatatcagcctcc
aaatgcagagaccaatgtatacaccagcaagattttgctgaaaagaccct
gatatagctgtctcttgggaggcaatgccagtgcctggcaaacacagaag
tggatgctcacagtcagctattggatggaacacagggtccccaatggagg
agctagagaaagtacccaaggagctaaagggtctgcaacctataggtgga
acaattatgactaaccagtaccaccagagctcatgtctctagctgcatat
gtagcagaagatgcctagtcgccatcattgggaagagagtccatttgtct
ggcaactttatatggccagtaaggtacctatggccagattggagtgcatg
gctaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3222652_3223783
seq2: B6Ng01-249G12.b_43_1175

seq1  GAATTCTTCATTAAAAAAATACTTCTTGTAACTGAAGCAGATTCTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTAAAAAAATACTTCTTGTAACTGAAGCAGATTCTTGAAT  50

seq1  GATACTGGAGTTTGTTCATTATTACTGTTCTGTGGAGTTGGGCTCCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGAGTTTGTTCATTATTACTGTTCTGTGGAGTTGGGCTCCAAAT  100

seq1  TAAGACACAGTTCCAAGTTTGGAGTGTCCTCCTGCCCTCCAGACAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAGTTCCAAGTTTGGAGTGTCCTCCTGCCCTCCAGACAAGGTT  150

seq1  TCCCTGTGTGTCCCTGTCTGTCCTGGAGCTCACTCTGTAGATGAGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGTGTCCCTGTCTGTCCTGGAGCTCACTCTGTAGATGAGGCTGA  200

seq1  CCTCAAACTCAGTGATCTGCATGCCTCTGCCTCTGGACTGCTGGGATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCAGTGATCTGCATGCCTCTGCCTCTGGACTGCTGGGATTAA  250

seq1  AGGTATGCACCACCATGCCCAGCTCCAATTGATACATTCTTACATAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGCACCACCATGCCCAGCTCCAATTGATACATTCTTACATAGAAC  300

seq1  AACTATTCCCAGGTGTCATTAGCATGGACTGACTGAGAGAGGGTACGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCCCAGGTGTCATTAGCATGGACTGACTGAGAGAGGGTACGTGG  350

seq1  ATCCACACTATTTAATCCATGTTAGGTGTGGTTTTAGCAAGTTGCGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTATTTAATCCATGTTAGGTGTGGTTTTAGCAAGTTGCGTTAG  400

seq1  CCTTTCAGTCAGTGATTCTCAACCTTCCTGATGCTGAGACCTTTGGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGTCAGTGATTCTCAACCTTCCTGATGCTGAGACCTTTGGCTGA  450

seq1  GGGATCTTCCTGTGCACTGGGTAAAGGTTGTCTTTATTTTTCACATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTCCTGTGCACTGGGTAAAGGTTGTCTTTATTTTTCACATCTTG  500

seq1  ATTTCTATGCCAACGGAGAGCTAAACACTGTGCAGTATTGTTGTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGCCAACGGAGAGCTAAACACTGTGCAGTATTGTTGTTTTTTT  550

seq1  ATTAAGCATCACCTGTCTCAGTGTTTCACAAACGTTCCTCTCCATCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCATCACCTGTCTCAGTGTTTCACAAACGTTCCTCTCCATCTCCT  600

seq1  CCTGATTGGCTTCATAAAGTGTTGCGGGCCTATACATGGGGCAAGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGGCTTCATAAAGTGTTGCGGGCCTATACATGGGGCAAGAGAGG  650

seq1  CAAGGTGGGGCCTCCAGGCAGAGATGGGGAGTCTGGGAAGGAATCAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGGGCCTCCAGGCAGAGATGGGGAGTCTGGGAAGGAATCAGCTG  700

seq1  CTAGAGATTTGCCAGCTAGACATGGAGGAAGGAATGGGTGTCAGGACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATTTGCCAGCTAGACATGGAGGAAGGAATGGGTGTCAGGACTGA  750

seq1  AGGAGAGGATATGAGCCACATGACAGAACATAGATTAGAATGAACCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGATATGAGCCACATGACAGAACATAGATTAGAATGAACCAGCT  800

seq1  AATGAAGTTATGTGAGCTAGTTGGGAACAAGCCTAGCTATAAGACCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTTATGTGAGCTAGTTGGGAACAAGCCTAGCTATAAGACCTAAG  850

seq1  CA-TTCATAAATAAATATAAGACTGTGTCA-TTTTTGAAGCTGGTGGGTC  898
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTTCATAAATAAATATAAGACTGTGTCATTTTTTGAAGCTGGTGGGTC  900

seq1  AAGGCAGTCTAGAGATACAATTTCTTATATTGTGGTGACCCCCTGCCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTCTAGAGATACAATTTCTTATATTGTGGTGACCCCCTGCCCCA  950

seq1  GCCATAAAATTATTTTCCTGCCTACTTCATAACCAAAATTTTGCTACTGT  998
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCATTAAATTATTTTCCTGCCTACTTCATAACCAACATTTTGCTACTGT  1000

seq1  TATAAGTTGTAATGTGTTTTCTATGGTCTATGGCCTTTCTACCCTTAAAG  1048
      ||| ||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TAT-AGTTGTAATGTGTTTTCTATGGTCTATGGCCCTTCTACCCTT-AAG  1048

seq1  AGATGACCCCCAGGTTGAGAACCACTGCTTTAAACAAACATTTTGGCACC  1098
      | ||||||||||||||||| ||   |||||||||| |||||||||||| |
seq2  AAATGACCCCCAGGTTGAGTACACTTGCTTTAAAC-AACATTTTGGCATC  1097

seq1  TCTACTCT-AGGTGTCAAAATGACAT-AAAAGAAAA  1132
      |||||||| ||||||||||   |||| |||||||||
seq2  TCTACTCTAAGGTGTCAAATGAACATAAAAAGAAAA  1133


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