BAC Information

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BAC

Clone NameB6Ng01-249I01
Chromosome6 (Build37)
Map Location 60,303,258 - 60,304,377
singlet/doubletsinglet
Overlap genenone
Upstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717
Downstream geneA530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, C130092O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249I01.bB6Ng01-249I01.g
ACCGA057306GA057307
length1,1851,125
definitionB6Ng01-249I01.b B6Ng01-249I01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaaacacctgaaaaaaat
ttttagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacgg
cagatgctggtgaggatgtggagaaagaggaacactccttcattgttggt
gggattgcaagcttgtacaaccattctggaaatcagtctgggggtttctc
agacaattgtacatggtactaccagaggatcccacaatacttctcctggc
catatatccagaagatgttacaactagtaagaaagaaacatgccccacta
tgttcataacagccttatttataatagccagaagctggaaagaatctaga
tgcccctcaacagaggaatagatacaaaattgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctaggcaa
atgcatgggcctggagggcattatcctgagtgaggtgacacaatcacaaa
agaactcaaatgatatatactcactgataagtggatattagcccagaaac
ttagtatacctgagatataagatacaatttgcaaaacacatgaaactgaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacactgtggaaggatttacagagagaaagtttggagctgagacaa
aaggatggaccatctagagattgccatatccagggatccatcccataatc
agcctccaaaagttgacaccattgcatacactagcaagattgtgctgata
ggaccctgatatagctgtctctagtgagactacgctggggcctagcaaac
acataagtggatgctcacagtcaggctattgaatggatcacagggccccc
aatggaggagctagagaaagtacccaaggagctaaagggatttgcaaccc
tataggtggaacaatattatggtactaaccagtacccgggagctcttgga
cctcctagcctggcatatgtatcaaaaggattggctagttgggccattca
ctggtaaagagaaggtccatggaactttgcaacttttgatgcccaaaatt
ggggaggtggactatggcgtgacgggggggggcgt
gaattcaaattattttctgtgtgaatcatgcttgaaaatgaaagaagtca
gtgcagtagaaaatgaataacgtgcccagaggaagtgtaacaacgacata
gagaagcacagatggataaagcagcaaaacagcctatccctgcagagatg
caacaaacaagtctacacgcctgagaaagagagcccatggcagaaaacac
tgcaccactgtccaatttgaagaaagaatgacatttttattggggttact
aacagtactatggatgcatgcctgctttcaatgaacagctataactctaa
agcacctattttgccagaaaacttaccttacactctcaagatctctacac
agcttgcaggcagatttacagaaagaacatctctctttcttcagttttct
gcttagatccattcccacccccagtggctatttactcccttttacaccat
cacaaggagcacttaagagcagtttagaattatttttgtgttttttcacc
tctacatgtgatcttttcccaccttagattgttccttgagcttctcaagt
atcccattccctcctatataaatttagagggaatgttgaaagttggaggg
acatctagtggtggcaggcagcctcctgtagaatataaagcttgagacaa
ttgaacaagcagttcagagacacaaaagcctatacctcagagatatatag
aaaagaaccttgtagacaatgggaaccaaaaattcaggaagctagtgtca
cacatatgtatgcaggcaagacattgtctcacctgaattaaaaataagta
aacctttaaaataaataaatttgaaagaaagaatcattgaatttgtatga
gttggcctagaatttatgatataacttttctctaccctagtgtagctggg
aatttcaggactatgctacttactctacaggattcaatttaaattattga
tataatgtccaatgatgctgaaaaactattcctccatttcccttttctat
aggtatactatatgcaaatacaaatttaaataaagttacctactcatgaa
cataaatgacacttcacagccagctcaagtcaacaatttgttgttatcca
catctacacttaatattgtacattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60303258_60304377
seq2: B6Ng01-249I01.g_67_1191

seq1  GAATTCAAATTATTTTCTGTGTGAATCATGCTTGAAAATGAAAGAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTATTTTCTGTGTGAATCATGCTTGAAAATGAAAGAAGTCA  50

seq1  GTGCAGTAGAAAATGAATAACGTGCCCAGAGGAAGTGTAACAACGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTAGAAAATGAATAACGTGCCCAGAGGAAGTGTAACAACGACATA  100

seq1  GAGAAGCACAGATGGATAAAGCAGCAAAACAGCCTATCCCTGCAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACAGATGGATAAAGCAGCAAAACAGCCTATCCCTGCAGAGATG  150

seq1  CAACAAACAAGTCTACACGCCTGAGAAAGAGAGCCCATGGCAGAAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAGTCTACACGCCTGAGAAAGAGAGCCCATGGCAGAAAACAC  200

seq1  TGCACCACTGTCCAATTTGAAGAAAGAATGACATTTTTATTGGGGTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACTGTCCAATTTGAAGAAAGAATGACATTTTTATTGGGGTTACT  250

seq1  AACAGTACTATGGATGCATGCCTGCTTTCAATGAACAGCTATAACTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACTATGGATGCATGCCTGCTTTCAATGAACAGCTATAACTCTAA  300

seq1  AGCACCTATTTTGCCAGAAAACTTACCTTACACTCTCAAGATCTCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTATTTTGCCAGAAAACTTACCTTACACTCTCAAGATCTCTACAC  350

seq1  AGCTTGCAGGCAGATTTACAGAAAGAACATCTCTCTTTCTTCAGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAGGCAGATTTACAGAAAGAACATCTCTCTTTCTTCAGTTTTCT  400

seq1  GCTTAGATCCATTCCCACCCCCAGTGGCTATTTACTCCCTTTTACACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGATCCATTCCCACCCCCAGTGGCTATTTACTCCCTTTTACACCAT  450

seq1  CACAAGGAGCACTTAAGAGCAGTTTAGAATTATTTTTGTGTTTTTTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAGCACTTAAGAGCAGTTTAGAATTATTTTTGTGTTTTTTCACC  500

seq1  TCTACATGTGATCTTTTCCCACCTTAGATTGTTCCTTGAGCTTCTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGTGATCTTTTCCCACCTTAGATTGTTCCTTGAGCTTCTCAAGT  550

seq1  ATCCCATTCCCTCCTATATAAATTTAGAGGGAATGTTGAAAGTTGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTCCCTCCTATATAAATTTAGAGGGAATGTTGAAAGTTGGAGGG  600

seq1  ACATCTAGTGGTGGCAGGCAGCCTCCTGTAGAATATAAAGCTTGAGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGTGGTGGCAGGCAGCCTCCTGTAGAATATAAAGCTTGAGACAA  650

seq1  TTGAACAAGCAGTTCAGAGACACAAAAGCCTATACCTCAGAGATATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAGCAGTTCAGAGACACAAAAGCCTATACCTCAGAGATATATAG  700

seq1  AAAAGAACCTTGTAGACAATGGGAACCAAAAATTCAGGAAGCTAGTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCTTGTAGACAATGGGAACCAAAAATTCAGGAAGCTAGTGTCA  750

seq1  CACATATGTATGCAGGCAAGACATTGTCTCACCTGAATTAAAAATAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTATGCAGGCAAGACATTGTCTCACCTGAATTAAAAATAAGTA  800

seq1  AACCTTTAAAATAAATAAATTTGAAAGAAAGAATCATTGAA-TTGTATGA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACCTTTAAAATAAATAAATTTGAAAGAAAGAATCATTGAATTTGTATGA  850

seq1  GTTGGCCTAGAATTTATGATATAAC-TTTCTCTACCCTAGTGTAGCT-GG  897
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GTTGGCCTAGAATTTATGATATAACTTTTCTCTACCCTAGTGTAGCTGGG  900

seq1  AATTTCAGGACTATGCTACTTACTCTACAGGATTCAATTTAAA-TATTGA  946
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTTCAGGACTATGCTACTTACTCTACAGGATTCAATTTAAATTATTGA  950

seq1  TATAATGTCCAATGATGCTGAAAAACTA-TCCTCCATT--CCCTTTCTAT  993
      |||||||||||||||||||||||||||| |||||||||  || |||||||
seq2  TATAATGTCCAATGATGCTGAAAAACTATTCCTCCATTTCCCTTTTCTAT  1000

seq1  AGGTATACTTATATGCAAATACAAA-TTAAATAAAGT--ACTACTCCATG  1040
      |||||||| |||||||||||||||| |||||||||||   ||||| ||||
seq2  AGGTATAC-TATATGCAAATACAAATTTAAATAAAGTTACCTACT-CATG  1048

seq1  AACATAAATGACACTTCACAGCCAGCTCCAAAAGTCAACCAATTTG-TGT  1089
      ||||||||||||||||||||||||||||   ||||||| ||||||| |||
seq2  AACATAAATGACACTTCACAGCCAGCTC---AAGTCAA-CAATTTGTTGT  1094

seq1  ATCCCACAATCTACAC-TAATATTGTACATTC  1120
         |||| |||||||| |||||||||||||||
seq2  TATCCAC-ATCTACACTTAATATTGTACATTC  1125