BAC Information

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BAC

Clone NameB6Ng01-249M22
Chromosome6 (Build37)
Map Location 49,315,332 - 49,426,702
singlet/doubletdoublet
Overlap geneD330028D13Rik, Stk31
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126
Downstream geneLOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M22.bB6Ng01-249M22.g
ACCGA057531GA057532
length1,1301,096
definitionB6Ng01-249M22.b B6Ng01-249M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,315,332 - 49,316,476)(49,425,598 - 49,426,702)
sequence
gaattccatatcttaccatagatacacgtgcacacccatatttatttact
gtgtttttattcaaagtaactaggaactagggtcaaaatacaccaactgt
tgcatggataatggaaatgtggtgtgcatacacaatgggattttattcag
ctggaaagaaaaacaaaacttttaccatatttatttactgtgtttttatt
caaagtaactaggaactagggtcaaaatacaccaactgttgcatggataa
tggaaatgtggtgtgcatacataatggggttttattcagctggaaagaaa
aacaaaactttcaggtaatatgaacagcaaaatattgtacgaagtgaggg
aacccaggccccgaaagacaaatgccacatcttttttctcaacgtggatc
tgagtttcaaactttgtacttatgtacctaaaatggagtgtctatagagg
tcagtaagccagaaaggtcccacaagaggggagggaaagaggcctcagtg
tggggagggaagagtagagcacatgcaatttgacagaagagggcaatact
gggagctaaggggtgagggcaggggcaggggtgagttagcagaaactact
cacatatggaaagacttatggaaattcaacactttgtatgctaattaaaa
cacttttaaaaaggattttgaatgacgggctaataacaataagaacttta
agaagtttaacactaagaacatcccttacttatccaggcattttggaagc
agaggcaggagaagcccaagtgtgaaaacagacttgaccgcatggtgagt
tctaaattagccaggatcatatagcgggtgagacctctcaaaaccatccc
accctgaccaggccagggatacggctcagttggcagagccctgaagtaga
aacacactgttggaaaaacagcacagctgacctgctgcattcgagttgct
gtgaaccttgaatctctaaaatccaatatctgtaaacaagagattaaagg
atgagaaatttggtccatagagagctacaatgtttgagatcttttctctg
agtaacggttattcttactccttttcagcttgcagacacctatagctaaa
ttactacgaatgatactcatttttattaaa
gaattctgggcacaaaccaaggagagacgtgtgccactgtgtatcccaaa
acttgaagtgctctgggcccaaagaagaaaatataagcctgagtcagtcc
atgagcatgaagaagactgggttgaaaaaagagaatttgtggagctggac
atgtccctaacccttcagagttctgggccaaagggctgaagaggcctgag
cccatagaagatatgggtcagtgtctgtcctcaccacatgaattattgtg
gggaaaaaaaaacctttgagcctgggtcaatctctaaacttaaggatgtt
ggggctcaatgaagtggaaatgtgggcctggcactacccatatacctgaa
gagaggcctggacccaaggaagaagaaatgggccttggcctatactgatt
cctaaagtggctgtggccctaatagtaaatgggactgggactatccccaa
tcccggaagtggcccaggcccaaagaataatatatgtgggcctgggccaa
tccttgagcatgaagaatcctatgtcaaacccaagaaaaaaaaaaaatga
agcaggcctaggattagcccttgccttgaagtggcctcagccaaacacaa
agagagatgggtctggacctatcctgattcctgaagagaacaagtaagta
aaggagcaggacaaggaagatgaagaggaggaggacaagaaagaagagga
agacaaggaggaccaggaggaagacaaggaggaggatgagaaggacgagg
aaaagatatgggcctgggcctaaccccagttctgggagtggcctgagcct
aatgaagcatatatgtgggctacaccaatccctaagcatgaaaggatcct
ggacccatccaagaaaagttgggtcctgaatagacgatggcccaaagaag
agagtgggtctgggcccatatcctactcataaagtagctaagggcccaaa
taaaattatatgtgggcctggacatgaagaattttggattaggcctagac
ctaaggctgaagtgactgacgagagatgaatctggccttctcgtatctga
tgagcctaggtctagagtagagaaggttggcttgagttcaacccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49315332_49316476
seq2: B6Ng01-249M22.b_43_1172

seq1  GAATTCCATATCTTACCATAGATACACGTGCACACCCATATTTATTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCTTACCATAGATACACGTGCACACCCATATTTATTTACT  50

seq1  GTGTTTTTATTCAAAGTAACTAGGAACTAGGGTCAAAATACACCAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTATTCAAAGTAACTAGGAACTAGGGTCAAAATACACCAACTGT  100

seq1  TGCATGGATAATGGAAATGTGGTGTGCATACACAATGGGATTTTATTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGATAATGGAAATGTGGTGTGCATACACAATGGGATTTTATTCAG  150

seq1  CTGGAAAGAAAAACAAAACTTTTACCATATTTATTTACTGTGTTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAAAAACAAAACTTTTACCATATTTATTTACTGTGTTTTTATT  200

seq1  CAAAGTAACTAGGAACTAGGGTCAAAATACACCAACTGTTGCATGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACTAGGAACTAGGGTCAAAATACACCAACTGTTGCATGGATAA  250

seq1  TGGAAATGTGGTGTGCATACATAATGGGGTTTTATTCAGCTGGAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTGGTGTGCATACATAATGGGGTTTTATTCAGCTGGAAAGAAA  300

seq1  AACAAAACTTTCAGGTAATATGAACAGCAAAATATTGTACGAAGTGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTTTCAGGTAATATGAACAGCAAAATATTGTACGAAGTGAGGG  350

seq1  AACCCAGGCCCCGAAAGACAAATGCCACATCTTTTTTCTCAACGTGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGCCCCGAAAGACAAATGCCACATCTTTTTTCTCAACGTGGATC  400

seq1  TGAGTTTCAAACTTTGTACTTATGTACCTAAAATGGAGTGTCTATAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAAACTTTGTACTTATGTACCTAAAATGGAGTGTCTATAGAGG  450

seq1  TCAGTAAGCCAGAAAGGTCCCACAAGAGGGGAGGGAAAGAGGCCTCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGCCAGAAAGGTCCCACAAGAGGGGAGGGAAAGAGGCCTCAGTG  500

seq1  TGGGGAGGGAAGAGTAGAGCACATGCAATTTGACAGAAGAGGGCAATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGAAGAGTAGAGCACATGCAATTTGACAGAAGAGGGCAATACT  550

seq1  GGGAGCTAAGGGGTGAGGGCAGGGGCAGGGGTGAGTTAGCAGAAACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAAGGGGTGAGGGCAGGGGCAGGGGTGAGTTAGCAGAAACTACT  600

seq1  CACATATGGAAAGACTTATGGAAATTCAACACTTTGTATGCTAATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGGAAAGACTTATGGAAATTCAACACTTTGTATGCTAATTAAAA  650

seq1  CACTTTTAAAAAGGATTTTGAATGACGGGCTAATAACAATAAGAACTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAAAAAGGATTTTGAATGACGGGCTAATAACAATAAGAACTTTA  700

seq1  AGAAGTTTAACACTAAGAACATCCCTTACTTATCCAGGCA-TTTGGAAGC  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAGTTTAACACTAAGAACATCCCTTACTTATCCAGGCATTTTGGAAGC  750

seq1  AGAGGCAGGAGAAGCCCAAGTGTGAAAACAGACTTGACCGCATGGTGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGAGAAGCCCAAGTGTGAAAACAGACTTGACCGCATGGTGAGT  800

seq1  TCTAAATTAGCCAGGATCATATAGCGGGTGAGACCTCTCAAAACCATCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTAGCCAGGATCATATAGCGGGTGAGACCTCTCAAAACCATCCC  850

seq1  ACCCTGACCAGGCCAGGGATACGGCTCAGTTGGCAGAGCCCTGAAGTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACCAGGCCAGGGATACGGCTCAGTTGGCAGAGCCCTGAAGTAGA  900

seq1  AACACACTGTTGG-AAAACAGCCACAGCTGACCTGCTGCATTCGAGTTGC  948
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  AACACACTGTTGGAAAAACAG-CACAGCTGACCTGCTGCATTCGAGTTGC  949

seq1  TGTGAACCTTGAATCTCTAAAAATCCAATTATCTGTTAAACAAGAAGATT  998
      |||||||||||||||||| ||||||||| |||||| |||||||| |||||
seq2  TGTGAACCTTGAATCTCT-AAAATCCAA-TATCTG-TAAACAAG-AGATT  995

seq1  AAAGGATGAGAAATTTGGTCCATAGAGAGCTACAATGTTTGAGAATTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AAAGGATGAGAAATTTGGTCCATAGAGAGCTACAATGTTTGAGA--TCTT  1043

seq1  TTCTCCTGAGTAACGGTTAATTTCTTACTCCTTTTCAGCTTGCCAGAACA  1098
      |||| ||||||||||||||  ||||||||||||||||||||| ||||   
seq2  TTCT-CTGAGTAACGGTTA--TTCTTACTCCTTTTCAGCTTG-CAGA--C  1087

seq1  ACTTATAGCTAAATTACTAACGGATGATAATTCCATTTTTATATAAA  1145
      || ||||||||||||||| ||| |||||| |  ||||||||| ||||
seq2  ACCTATAGCTAAATTACT-ACGAATGATACT--CATTTTTAT-TAAA  1130

seq1: chr6_49425598_49426702
seq2: B6Ng01-249M22.g_63_1158 (reverse)

seq1  TAGGGTTAGACTCAAGCCCAACTTTCTTCTACTTTGGACCTAGGCCTCTT  50
      |||||||  ||||||| ||||| ||| |||||| | |||||||| ||| |
seq2  TAGGGTTGAACTCAAG-CCAACCTTC-TCTACTCTAGACCTAGG-CTCAT  47

seq1  CAGGAATACGGAGAGGGCCAGATCCATCTCTCGTCCAGGTCACTTCAGGC  100
      |||  |||| |||| |||||||| |||||||||||   |||||||||| |
seq2  CAG--ATAC-GAGAAGGCCAGATTCATCTCTCGTC--AGTCACTTCAGCC  92

seq1  CTAGGTCTAGGCCTAATCCAAAATTTCTTCATGTCCAGGCCCACATATAC  150
       |||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TTAGGTCTAGGCCTAATCCAAAA-TTCTTCATGTCCAGGCCCACATATAA  141

seq1  TTTTATTTGGGCCC-TAGCTACTTTAATGGTTGGATATGGGCCCAGACCC  199
      |||||||||||||| |||||||||||   || ||||||||||||||||||
seq2  TTTTATTTGGGCCCTTAGCTACTTTATGAGTAGGATATGGGCCCAGACCC  191

seq1  ACATCTCTTCTTTGGGCCATCGTCTATTCAGGACCCAACTTTTCTTGGAT  249
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AC-TCTCTTCTTTGGGCCATCGTCTATTCAGGACCCAACTTTTCTTGGA-  239

seq1  TGGGTCCAGGATCC-TTCATGCTTAGGGATTGGTGTAGCCCACATATATG  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGGTCCAGGATCCTTTCATGCTTAGGGATTGGTGTAGCCCACATATATG  289

seq1  CTTCATTAGGCTCAGGCCACTCCCAGAACTGGGGTTAGGCCCAGGCCCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAGGCTCAGGCCACTCCCAGAACTGGGGTTAGGCCCAGGCCCAT  339

seq1  ATCTTTTCCTCGTCCTTCTCATCCTCCTCCTTGTCTTCCTCCTGGTCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCCTCGTCCTTCTCATCCTCCTCCTTGTCTTCCTCCTGGTCCTC  389

seq1  CTTGTCTTCCTCTTCTTTCTTGTCCTCCTCCTCTTCATCTTCCTTGTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCCTCTTCTTTCTTGTCCTCCTCCTCTTCATCTTCCTTGTCCT  439

seq1  GCTCCTTTACTTACTTGTTCTCTTCAGGAATCAGGATAGGTCCAGACCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTACTTACTTGTTCTCTTCAGGAATCAGGATAGGTCCAGACCCA  489

seq1  TCTCTCTTTGTGTTTGGCTGAGGCCACTTCAAGGCAAGGGCTAATCCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTGTGTTTGGCTGAGGCCACTTCAAGGCAAGGGCTAATCCTAG  539

seq1  GCCTGCTTCATTTTTTTTTTTTCTTGGGTTTGACATAGGATTCTTCATGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTCATTTTTTTTTTTTCTTGGGTTTGACATAGGATTCTTCATGC  589

seq1  TCAAGGATTGGCCCAGGCCCACATATATTATTCTTTGGGCCTGGGCCACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATTGGCCCAGGCCCACATATATTATTCTTTGGGCCTGGGCCACT  639

seq1  TCCGGGATTGGGGATAGTCCCAGTCCCATTTACTATTAGGGCCACAGCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGATTGGGGATAGTCCCAGTCCCATTTACTATTAGGGCCACAGCCA  689

seq1  CTTTAGGAATCAGTATAGGCCAAGGCCCATTTCTTCTTCCTTGGGTCCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAATCAGTATAGGCCAAGGCCCATTTCTTCTTCCTTGGGTCCAG  739

seq1  GCCTCTCTTCAGGTATATGGGTAGTGCCAGGCCCACATTTCCACTTCATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTCAGGTATATGGGTAGTGCCAGGCCCACATTTCCACTTCATT  789

seq1  GAGCCCCAACATCCTTAAGTTTAGAGATTGACCCAGGCTCAAAGGTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCAACATCCTTAAGTTTAGAGATTGACCCAGGCTCAAAGGTTTTT  839

seq1  TTTTCCCCACAATAATTCATGTGGTGAGGACAGACACTGACCCATATCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCACAATAATTCATGTGGTGAGGACAGACACTGACCCATATCTT  889

seq1  CTATGGGCTCAGGCCTCTTCAGCCCTTTGGCCCAGAACTCTGAAGGGTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGCTCAGGCCTCTTCAGCCCTTTGGCCCAGAACTCTGAAGGGTTA  939

seq1  GGGACATGTCCAGCTCCACAAATTCTCTTTTTTCAACCCAGTCTTCTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGTCCAGCTCCACAAATTCTCTTTTTTCAACCCAGTCTTCTTCA  989

seq1  TGCTCATGGACTGACTCAGGCTTATATTTTCTTCTTTGGGCCCAGAGCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGACTGACTCAGGCTTATATTTTCTTCTTTGGGCCCAGAGCAC  1039

seq1  TTCAAGTTTTGGGATACACAGTGGCACACGTCTCTCCTTGGTTTGTGCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTGGGATACACAGTGGCACACGTCTCTCCTTGGTTTGTGCCC  1089

seq1  AGAATTC  1105
      |||||||
seq2  AGAATTC  1096