BAC Information

Click to search

BAC

Clone NameB6Ng01-249N23
Chromosome6 (Build37)
Map Location 44,349,390 - 44,350,480
singlet/doubletsinglet
Overlap genenone
Upstream geneTpk1, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249N23.bB6Ng01-249N23.g
ACCGA057579GA057580
length9021,090
definitionB6Ng01-249N23.b B6Ng01-249N23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttccttgtgttctagagcttttaggtgtgctgtctggctgcta
gcatatgctctctctagtttctttgtggccgcactcatagctataagttt
tcctcttaggactgcttgcattttgtcccataagtttgggtatgttgtgg
gttcattttattgaactctaaaattctttaatttctttcatatttcttcc
ttgaccaagttatcattgagtagagtgttgtccagctccctcatgaatgt
tggctttctattatttatgttgttattgaatatcagccttagtctgtggt
gatctgagaagatgcatgggataatttcaatacttttgtatttgttgagg
cctgttttgtgaccaattatatgattagttttggagaatgtaccatgagg
tgctgagaagaaggtatatccttttggattagaatagaaataaatgttct
gcagatatctgtttaatccatttggttcataatttctgtaattttcactg
tgtctctttttagtttctatttcaaggatctgtccagtaataagagtagg
gtgttgaagtctcccactattattatgtgcagtgcaatgtgtgctttgag
ttttactatagtttctttaatgaatgtggatgcccttacatttggagcat
agatattcagaattaagagttcatcttggaagattttactttttgaaaga
catttctctccttgtcttttttgataactttgggttggatggtgattttt
attcaatattagaatggctactccagcctgtttcttcagaccatttgctt
ggaaaatagttttgtagactttttctctgagatagtgtccctctttgtcc
ctggggtgggtttccttttttgtagcacaaatgtttggtcctgtttatgt
tg

gaattcagtggtaatataaatataaatatttataaatgtacttattataa
tggtgacattgaatataacctgaggagagataatacttatttatgagtat
aaacatgaaagcagtggaagcagtggtttgtttgtttgtttgtttgtttg
ttttccgagacagggtttctctgtatagccctggctgtactggaactcac
tttgtagaccaggctggcctcaaactcaagaatctgcctgcttctgcctc
ccaaatgctgggattaaaggcatgcaccaccacacatggctaaaagcagt
gtattcttttgcttgctattgaattcaatatttgatcatgttaaatcatc
ctgaatagaattagcatattaaaataattgtgttaaaatcattttacctt
gtcagctaaattttaaagtctaaatgttttaataagatatttaagtctat
ctttatttcattttgaaaatttaagctctatgaaacatttttaaagaact
ttaaaataatcacttttgctagtataaaaacaaataggacaagaaaaata
agatgttagaaatatcattagatacatgcaaggaacatagggcaagaatg
actgaaactgtcattaaaactgtggtgtagccttttgttctcctttagga
tgaataccttacagaggattagtgatgctacagtattggattctgaggca
aatgtcaccacctggttgaaaataattgacttttagagctgaacaatgtg
aaacctggattctgtatctatcttccgtgagtcctgaaaagattcacatc
attcattttccccttttgtgagtcagtgaatgggtttggcctgtgctgca
gatttttgtttttaatctaaagggatgattatattgtgttccaaaacagg
ataaatacccaccatgattgattgggacttgtatatctctccattaaata
gactttagtacaattacaattaacttaaatatctccaggaaatttgttat
atcttcaatcctttcaaacaactgattaagaaagactactctatatgggt
ttttttatacagagccagctgcaatatggtttcatcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44349390_44350480
seq2: B6Ng01-249N23.g_67_1156

seq1  GAATTCAGTGGTAATATAAATATAAATATTTATAAATGTACTTATTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTAATATAAATATAAATATTTATAAATGTACTTATTATAA  50

seq1  TGGTGACATTGAATATAACCTGAGGAGAGATAATACTTATTTATGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACATTGAATATAACCTGAGGAGAGATAATACTTATTTATGAGTAT  100

seq1  AAACATGAAAGCAGTGGAAGCAGTGGTTTGTTTGTTTGTTTGTTTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAAGCAGTGGAAGCAGTGGTTTGTTTGTTTGTTTGTTTGTTTG  150

seq1  TTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTACTGGAACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTACTGGAACTCAC  200

seq1  TTTGTAGACCAGGCTGGCCTCAAACTCAAGAATCTGCCTGCTTCTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACCAGGCTGGCCTCAAACTCAAGAATCTGCCTGCTTCTGCCTC  250

seq1  CCAAATGCTGGGATTAAAGGCATGCACCACCACACATGGCTAAAAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTGGGATTAAAGGCATGCACCACCACACATGGCTAAAAGCAGT  300

seq1  GTATTCTTTTGCTTGCTATTGAATTCAATATTTGATCATGTTAAATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTTTTGCTTGCTATTGAATTCAATATTTGATCATGTTAAATCATC  350

seq1  CTGAATAGAATTAGCATATTAAAATAATTGTGTTAAAATCATTTTACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGAATTAGCATATTAAAATAATTGTGTTAAAATCATTTTACCTT  400

seq1  GTCAGCTAAATTTTAAAGTCTAAATGTTTTAATAAGATATTTAAGTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTAAATTTTAAAGTCTAAATGTTTTAATAAGATATTTAAGTCTAT  450

seq1  CTTTATTTCATTTTGAAAATTTAAGCTCTATGAAACATTTTTAAAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCATTTTGAAAATTTAAGCTCTATGAAACATTTTTAAAGAACT  500

seq1  TTAAAATAATCACTTTTGCTAGTATAAAAACAAATAGGACAAGAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATCACTTTTGCTAGTATAAAAACAAATAGGACAAGAAAAATA  550

seq1  AGATGTTAGAAATATCATTAGATACATGCAAGGAACATAGGGCAAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAGAAATATCATTAGATACATGCAAGGAACATAGGGCAAGAATG  600

seq1  ACTGAAACTGTCATTAAAACTGTGGTGTAGCCTTTTGTTCTCCTTTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTGTCATTAAAACTGTGGTGTAGCCTTTTGTTCTCCTTTAGGA  650

seq1  TGAATACCTTACAGAGGATTAGTGATGCTACAGTATTGGATTCTGAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACCTTACAGAGGATTAGTGATGCTACAGTATTGGATTCTGAGGCA  700

seq1  AATGTCACCACCTGGTTGAAAATAATTGACTTTTAGAGCTGAACAATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACCACCTGGTTGAAAATAATTGACTTTTAGAGCTGAACAATGTG  750

seq1  AAACCTGGATTCTGTATCTATCTTCCGTGAGTCCTGAAAAGATTCACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGATTCTGTATCTATCTTCCGTGAGTCCTGAAAAGATTCACATC  800

seq1  ATTCATTTTCCCCTTTTGTGAGTCAGTGAATGGGTTTGGCCTGTGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTCCCCTTTTGTGAGTCAGTGAATGGGTTTGGCCTGTGCTGCA  850

seq1  GATTTTTGTTTTTAATCT-AAGGGATGATTATATTGTGTTCCAAAACAGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATTTTTGTTTTTAATCTAAAGGGATGATTATATTGTGTTCCAAAACAGG  900

seq1  ATAAATACCCACCATGATTGATTGGGACTTGTATATCTCTCCATTAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACCCACCATGATTGATTGGGACTTGTATATCTCTCCATTAAATA  950

seq1  GACTTTAGTAACAATTACAATTAACTTAAATATCTTCCAGGAAATTTGTT  999
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GACTTTAGT-ACAATTACAATTAACTTAAATATC-TCCAGGAAATTTGTT  998

seq1  ATTATTCTTCAAATCCTTTCAAACAACTGATTAAGAAAGAACTACTCTAT  1049
      ||   ||||| |||||||||||||||||||||||||||| ||||||||||
seq2  AT--ATCTTC-AATCCTTTCAAACAACTGATTAAGAAAG-ACTACTCTAT  1044

seq1  ATGG---TTTTTATACAGAG-CAGCTGCAATATGGTTTCATCAAAA  1091
      ||||   ||||||||||||| |||||||||||||||||||||||||
seq2  ATGGGTTTTTTTATACAGAGCCAGCTGCAATATGGTTTCATCAAAA  1090


| Home | SequenceCutter | Blast | Download |