BAC Information

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BAC

Clone NameB6Ng01-250H15
Chromosome6 (Build37)10 (Build37)
Map Location 21,870,931 - 21,871,09629,664,955 - 29,666,135
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
Downstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250H15.bB6Ng01-250H15.g
ACCGA058013GA058014
length9681,153
definitionB6Ng01-250H15.b B6Ng01-250H15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,870,931 - 21,871,096)(29,664,955 - 29,666,135)
sequence
gaattcattgtttttaatagctgagtagtaccccattgtgtaaatgtatc
acattttcggtatccattcctctgttgagggacttctggattctttccag
cttctggctactataaataaggttgtgatgaacatagtggaacatgtgtc
cttattgtatgttagagcatcttatcggtatatgcccagaagtgggattg
ctgggttctcaggtagtactatatccagttttctgaggaactgccaaact
gattttcagagtggttgtaccagcttgcaatcccaatagcaatggaggag
tgttcctttttctccacatcctcaccagcatctgatgtcacctgtgtttt
tgatcttagccattctgactggtgtgaggtggaatctcagggttattttg
atttgcatttcactgatgactaaggatgttgaacattttttttaagtgct
tctcagccattcagtattcctcagttgagaattctttgtttagctctgta
ctccattttttaatagggttatttggttctctggagtctaacttcttgag
ttctttgtatatatgggatattagccctctattggatttaggattggtaa
agatcttgtcccaatatgttggttgcctttttgtcttattgacagtgttc
tttgccttacagaagctttgcaattttatgaggtctcatttgtcaatttt
tgatcttagagtacaagccattggttccaggaatttttcccctgtgccca
tatgtttgaggctcttcctcactttctcctctctaagtttcagagtctct
agttttatgtggatgtccttcatccacttgaactttgagctttgtacagg
gagataaaaatggatagatttgcctttctatattctaactgccagttgag
ccagcaccattttgttgaaaatgctgtctttttttccacaggatgaggtg
atttttaaatatctctct

gaattcacatctctttatttataagttactttggcaaattaaagacaaga
ggaaaattaaaaaccatggtagacatggtagagatgttgaaacaccttcc
tgggctttactatttttagagccattatcagaaaacagtgagaattaatc
actttaaacaggaaatgtcttttactatgagataaggaagttgtatttga
ggctcctcttagttattttacttagagggtaataaaatgtgtcaaattta
ctgtaggaatggaaatgaaacaataagtaacccttaagattttatttcct
cttattatatatcataatttaaaagagattaaagattaaagcaatatgaa
tgaatacatgctgatttttccttggctactcaatcaaaaatataaagata
agattagaaagcaaaatgtaataaaatttatgtttaattttttgacattc
ccaactctacatactaaaatatttttacacacatgtgtatggaattattt
ttatgtgaaactaataatgcttgactattttaagcagttaactgggatat
taataccttttttgacaaaagagtatatgagaacactggaaactggtgtt
atcaaaacagaagcaggggatggagaaaggcaccatagactcctcatgca
gagtacaaagatggaaaccaaaaatggaaatgagagaaaataacaaaaga
tggaaatcagtaggattaataaaataaaaaatgtccataataccaaaagc
agtctacatagtcaatgcaatgccccataagaattccaacacagttcctt
acagaatttaatataacaattttcatcttcatatggaaacacacacacac
acacagagggtgactgaactcttgataaataatatataatatatatatat
atatatatagatatgtgacttaaaaaccttcatgagcttcagtttccatc
aacacatggagcagaacctatgccacaggactcttatacccaatactgct
gagtgggagcgagcctcccaggagtgtggacaggcctgtgagcacaagta
ggaccacccactgctgctcagaagaaacctgtcaggaccctcagaccagg
aaaaggactgctggacaggagtccatttccatctgaccaagctgatctgt
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21870931_21871096
seq2: B6Ng01-250H15.b_640_799 (reverse)

seq1  ATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCT  50
      ||||||||||||||||||||||||||    ||||  ||||||||||| ||
seq2  ATATGGGCACAGGGGAAAAATTCCTG----GAAC--CAATGGCTTGTACT  44

seq1  GTAAGATCGAGAATCGACAAATGGGACCTCATAAGATTGCAAAGCTTCTA  100
       ||||||| | ||| |||||||| |||||||||| |||||||||||||| 
seq2  CTAAGATCAAAAATTGACAAATGAGACCTCATAAAATTGCAAAGCTTCTG  94

seq1  TAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGG  150
      |||||||||  |||| ||||||||||||||||||| ||||||| ||||||
seq2  TAAGGCAAAGAACACTGTCAATAAGACAAAAAGGCAACCAACATATTGGG  144

seq1  AAAGGATCTTTACCAA  166
      | | ||||||||||||
seq2  ACAAGATCTTTACCAA  160


seq1: chr10_29664955_29666135
seq2: B6Ng01-250H15.g_66_1218 (reverse)

seq1  GGCACAGGATCAGCTTGTGGCTCAGATGGGAAAATGGAACCCTCCTGTCC  50
      |||||| |||||||||   | ||||||||  |||||||   |||||||||
seq2  GGCACA-GATCAGCTT---GGTCAGATGG--AAATGGA---CTCCTGTCC  41

seq1  CAGGCAGTTCCTTTTTTCCTGTGTCCTGAGGGTCCTGGACAGGTTTC-TC  99
         ||||| |   |||||||| || ||||||||||| |||||||||| ||
seq2  --AGCAGTCC---TTTTCCTG-GT-CTGAGGGTCCT-GACAGGTTTCTTC  83

seq1  TGAGCAGCAGT-GGTGGTCCTACCTGTGCTCACAGGCCTGTCCACACTCC  148
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TGAGCAGCAGTGGGTGGTCCTACTTGTGCTCACAGGCCTGTCCACACTCC  133

seq1  TGGGAGGCTCGCTCCCACTCAGCAGTATTGGGTAT-AGAGTCCTGTGGCA  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGAGGCTCGCTCCCACTCAGCAGTATTGGGTATAAGAGTCCTGTGGCA  183

seq1  TAGGTTCTGCTCCATGTGTTGATGGAAACTGGAAGCTCATGAAGGTTTTT  247
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TAGGTTCTGCTCCATGTGTTGATGGAAACT-GAAGCTCATGAAGG-TTTT  231

seq1  TAAGTCACATATCTATTATTATTATTATTATTATTATTATTATTATTATT  297
      ||||||||||||||||   |||   |||   ||||||            |
seq2  TAAGTCACATATCTATATATATATATATATATATTAT-----------AT  270

seq1  ATTATTTATTCAAGAGTTCAGTCACCCTCTGTGTGTGTGTGTGTGTTTCC  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTA-TCAAGAGTTCAGTCACCCTCTGTGTGTGTGTGTGTGTTTCC  319

seq1  ATATGAAGATGAAAATTGTTATATTAAATTCTGTAAGGAACTGTGTTGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGATGAAAATTGTTATATTAAATTCTGTAAGGAACTGTGTTGGA  369

seq1  ATTCTTATGGGGCATTGCATTGACTATGTAGACTGCTTTTGGTATTATGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATGGGGCATTGCATTGACTATGTAGACTGCTTTTGGTATTATGG  419

seq1  ACATTTTTTATTTTATTAATCCTACTGATTTCCATCTTTTGTTATTTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTATTTTATTAATCCTACTGATTTCCATCTTTTGTTATTTTCT  469

seq1  CTCATTTCCATTTTTGGTTTCCATCTTTGTACTCTGCATGAGGAGTCTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCCATTTTTGGTTTCCATCTTTGTACTCTGCATGAGGAGTCTAT  519

seq1  GGTGCCTTTCTCCATCCCCTGCTTCTGTTTTGATAACACCAGTTTCCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTTTCTCCATCCCCTGCTTCTGTTTTGATAACACCAGTTTCCAGT  569

seq1  GTTCTCATATACTCTTTTGTCAAAAAAGGTATTAATATCCCAGTTAACTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATATACTCTTTTGTCAAAAAAGGTATTAATATCCCAGTTAACTG  619

seq1  CTTAAAATAGTCAAGCATTATTAGTTTCACATAAAAATAATTCCATACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAGTCAAGCATTATTAGTTTCACATAAAAATAATTCCATACAC  669

seq1  ATGTGTGTAAAAATATTTTAGTATGTAGAGTTGGGAATGTCAAAAAATTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTAAAAATATTTTAGTATGTAGAGTTGGGAATGTCAAAAAATTA  719

seq1  AACATAAATTTTATTACATTTTGCTTTCTAATCTTATCTTTATATTTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATTTTATTACATTTTGCTTTCTAATCTTATCTTTATATTTTTG  769

seq1  ATTGAGTAGCCAAGGAAAAATCAGCATGTATTCATTCATATTGCTTTAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTAGCCAAGGAAAAATCAGCATGTATTCATTCATATTGCTTTAAT  819

seq1  CTTTAATCTCTTTTAAATTATGATATATAATAAGAGGAAATAAAATCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCTCTTTTAAATTATGATATATAATAAGAGGAAATAAAATCTTA  869

seq1  AGGGTTACTTATTGTTTCATTTCCATTCCTACAGTAAATTTGACACATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACTTATTGTTTCATTTCCATTCCTACAGTAAATTTGACACATTT  919

seq1  TATTACCCTCTAAGTAAAATAACTAAGAGGAGCCTCAAATACAACTTCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCCTCTAAGTAAAATAACTAAGAGGAGCCTCAAATACAACTTCCT  969

seq1  TATCTCATAGTAAAAGACATTTCCTGTTTAAAGTGATTAATTCTCACTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATAGTAAAAGACATTTCCTGTTTAAAGTGATTAATTCTCACTGT  1019

seq1  TTTCTGATAATGGCTCTAAAAATAGTAAAGCCCAGGAAGGTGTTTCAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATAATGGCTCTAAAAATAGTAAAGCCCAGGAAGGTGTTTCAACA  1069

seq1  TCTCTACCATGTCTACCATGGTTTTTAATTTTCCTCTTGTCTTTAATTTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCATGTCTACCATGGTTTTTAATTTTCCTCTTGTCTTTAATTTG  1119

seq1  CCAAAGTAACTTATAAATAAAGAGATGTGAATTC  1181
      ||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAACTTATAAATAAAGAGATGTGAATTC  1153


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