BAC Information

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BAC

Clone NameB6Ng01-252G06
Chromosome6 (Build37)
Map Location 27,598,606 - 27,751,878
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252G06.bB6Ng01-252G06.g
ACCGA059398GA059399
length1,1401,101
definitionB6Ng01-252G06.b B6Ng01-252G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,750,728 - 27,751,878)(27,598,606 - 27,599,724)
sequence
gaattcttagagtagtttaggcaacaaagtaagagaatatttgaaaaaga
aaatatttcaaaaaggaaaaaaaatacagatgttgcaaaacacacagatt
cttaaggaaagagggcaaagttgagaggtctgtgcactcagtgaccaaca
atgctgcaaagaacagaaaactaatttatagccacttgtcagaggcagag
cgatcctataacaaaatggttgactcttgatacttgttgcctagggggct
tttgttttagaatagagatgaaataaaaaggtatttgaaaggaatgttag
caaaatgagtataaaaatgaagcctttgaatttgttgtttcggtcaatac
ttattttctgttgagttagatgcaaagtgctgtgtggtgctttcaaagca
accatgataaattattaagtattcgtaatttattacccaaaccagagaat
aatatattgcagcgtgagctgatgtcacaaacagtgctggctggagcact
gtctggatgctgcctgagactgtctgactaagtactgggctcattagtaa
ctcacattgcagcaggagctgctgttcctccttgtgagggtttgtttttc
aattccagacaggaaactgaagaattctgatcatgtacttccattattca
agtctcgtagcacgagctctctttttgacagtgctggaacaattgccagt
ttttttttaattaattgattgattaactgtattaagtaactaaatgacag
aacttggtccttctatttaaactaaatgtttcctgaagccttgctaaacc
tgtttggacttttgactttatctctggctgacatgaaataacagtgactg
cttttgtttgttaacctagttacaagctatatttcctgttatgtgtagtg
tgaattttatgaagatatttcaaactaaacatgcaatagcatgtcctgtg
taaggattaattcagacagcctgcagacattaccgttttttcatcaagtc
tttgtaacctgagtgtttcttctactgattcaaagcaacattcttggagg
agatatacatctgtattatgagagggaaaacactttttacattctttata
tgatttaagattctgtcttatgtgaagctgatacctctat

gaattcactggcctcacagttgtaagggcccttttgtctatacagccaca
atgccaccgtttagacaggttgatccaattgaccagctaggaaaaagaaa
ccagcaatccctgtttcacgcaaatagctgtaagcagagactcttaaaaa
atagagcctacattatttccaaataggagcaaaaaaataaatataacaaa
aatcacaccacctaaaatgtattttgagtcaatgatagcatacaaaaaaa
aagtgtttgctgaaacaaaacaggctttgaggcaaatccacggtgctgta
atagatcatgaaaaataatcatacccataagaaatcactttggatcatta
acagcagtatagatttccatcaatttaaatgacccttgaaaatgaagcac
aatatttacttccttggcttttcttcaagtcttaggaaaaatattgattc
ggaactctgaaatcaaagccaagaggttaaaataagagaaactgccttca
ctctttactactgaaaccacggaagaaatgaaaacacagccctcggcagt
aacagtgttaattatctacattatttttcctggtgtatgctatcgggaaa
aaaaaaaaaaagcagcccattaaccttgtggaatgtattctcataggcac
cgcacagcaagagtgtacactcagtcccaaattatgtcacttcctcaggt
ctggtgtcttcaaaggttacttcctccagctactgagggtcagagtcctt
agagcagcagtccctgagagttagcacgttgtcatctgaaagacctcatc
ttccaattcagaagaaatatgcctttcatttagtgcacaagaaataatag
caaacaacagaatgcaatccatatagatccttaatatttctcctgaaaaa
tgcctccttaatcaatatcattcactctactgtatgaaaatagatgacac
tcattctcaaccattccattatctgctacctgggatctgactttgtttgg
tggtgttgtggtttgtttatgttgttgtttgttgcatacaaagtagatat
gctatttgaaggagagcaaagagcacgctgctatatgccttaatatgagt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27750728_27751878
seq2: B6Ng01-252G06.b_44_1183 (reverse)

seq1  ATAGAGGTAACAGCCTTCACATAAGACAAGGTATCTTATAATCATTATAA  50
      ||||||||| ||| ||||||||||||||  | |||||| ||||| |||||
seq2  ATAGAGGTATCAG-CTTCACATAAGACA--GAATCTTA-AATCA-TATAA  45

seq1  AGAAATGTTAAAAGTGTTTTTCACTCTCCTTAAATACAGATGTATATTCT  100
      || ||||| ||||||| ||||| ||||| |  |||||||||||||| |||
seq2  AG-AATGTAAAAAGTG-TTTTCCCTCTCAT--AATACAGATGTATA-TCT  90

seq1  CCTCCAAGAATG-TGCTTTGAATCAGTAGAAGAAAACACTCAGGTTACAA  149
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CCTCCAAGAATGTTGCTTTGAATCAGTAGAAG-AAACACTCAGGTTACAA  139

seq1  AGACTTGATGAAAAAACGGTAATGTCTGCAGGCTGTCTGAATTAATCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGATGAAAAAACGGTAATGTCTGCAGGCTGTCTGAATTAATCCTT  189

seq1  ACACAGGACATGCTATTGCATGTTTAGTTTGAATTATTCTTCATAAAATT  249
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  ACACAGGACATGCTATTGCATGTTTAGTTTGAAATA-TCTTCATAAAATT  238

seq1  CACACTACACATAACAGGAAATATAGCTTGTAACTAGGTTAACAAACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACACATAACAGGAAATATAGCTTGTAACTAGGTTAACAAACAAA  288

seq1  AGCAGTCACTGTTATTTCATGTCAGCCAGAGATAAAGTCAAAAGTCCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACTGTTATTTCATGTCAGCCAGAGATAAAGTCAAAAGTCCAAA  338

seq1  CAGGTTTAGCAAGGCTTCAGGAAACATTTAGTTTAAATAGAAGGACCAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTAGCAAGGCTTCAGGAAACATTTAGTTTAAATAGAAGGACCAAG  388

seq1  TTCTGTCATTTAGTTACTTAATACAGTTAATCAATCAATTAATTAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCATTTAGTTACTTAATACAGTTAATCAATCAATTAATTAAAAAA  438

seq1  AAACTGGCAATTGTTCCAGCACTGTCAAAAAGAGAGCTCGTGCTACGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCAATTGTTCCAGCACTGTCAAAAAGAGAGCTCGTGCTACGAGA  488

seq1  CTTGAATAATGGAAGTACATGATCAGAATTCTTCAGTTTCCTGTCTGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAATGGAAGTACATGATCAGAATTCTTCAGTTTCCTGTCTGGAA  538

seq1  TTGAAAAACAAACCCTCACAAGGAGGAACAGCAGCTCCTGCTGCAATGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACAAACCCTCACAAGGAGGAACAGCAGCTCCTGCTGCAATGTG  588

seq1  AGTTACTAATGAGCCCAGTACTTAGTCAGACAGTCTCAGGCAGCATCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTAATGAGCCCAGTACTTAGTCAGACAGTCTCAGGCAGCATCCAG  638

seq1  ACAGTGCTCCAGCCAGCACTGTTTGTGACATCAGCTCACGCTGCAATATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTCCAGCCAGCACTGTTTGTGACATCAGCTCACGCTGCAATATA  688

seq1  TTATTCTCTGGTTTGGGTAATAAATTACGAATACTTAATAATTTATCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTGGTTTGGGTAATAAATTACGAATACTTAATAATTTATCATG  738

seq1  GTTGCTTTGAAAGCACCACACAGCACTTTGCATCTAACTCAACAGAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTGAAAGCACCACACAGCACTTTGCATCTAACTCAACAGAAAAT  788

seq1  AAGTATTGACCGAAACAACAAATTCAAAGGCTTCATTTTTATACTCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGACCGAAACAACAAATTCAAAGGCTTCATTTTTATACTCATTT  838

seq1  TGCTAACATTCCTTTCAAATACCTTTTTATTTCATCTCTATTCTAAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACATTCCTTTCAAATACCTTTTTATTTCATCTCTATTCTAAAACA  888

seq1  AAAGCCCCCTAGGCAACAAGTATCAAGAGTCAACCATTTTGTTATAGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCCTAGGCAACAAGTATCAAGAGTCAACCATTTTGTTATAGGAT  938

seq1  CGCTCTGCCTCTGACAAGTGGCTATAAATTAGTTTTCTGTTCTTTGCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGCCTCTGACAAGTGGCTATAAATTAGTTTTCTGTTCTTTGCAGC  988

seq1  ATTGTTGGTCACTGAGTGCACAGACCTCTCAACTTTGCCCTCTTTCCTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGTCACTGAGTGCACAGACCTCTCAACTTTGCCCTCTTTCCTTA  1038

seq1  AGAATCTGTGTGTTTTGCAACATCTGTATTTTTTTTCCTTTTTGAAATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGTGTGTTTTGCAACATCTGTATTTTTTTTCCTTTTTGAAATAT  1088

seq1  TTTCTTTTTCAAATATTCTCTTACTTTGTTGCCTAAACTACTCTAAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCAAATATTCTCTTACTTTGTTGCCTAAACTACTCTAAGAAT  1138

seq1  TC  1151
      ||
seq2  TC  1140


seq1: chr6_27598606_27599724
seq2: B6Ng01-252G06.g_68_1168

seq1  GAATTCACTGGCCTCACAGTTGTAAGGGCCCTTTTGTCTATACAGCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCCTCACAGTTGTAAGGGCCCTTTTGTCTATACAGCCACA  50

seq1  ATGCCACCGTTTAGACAGGTTGATCCAATTGACCAGCTAGGAAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACCGTTTAGACAGGTTGATCCAATTGACCAGCTAGGAAAAAGAAA  100

seq1  CCAGCAATCCCTGTTTCACGCAAATAGCTGTAAGCAGAGACTCTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATCCCTGTTTCACGCAAATAGCTGTAAGCAGAGACTCTTAAAAA  150

seq1  ATAGAGCCTACATTATTTCCAAATAGGAGCAAAAAAATAAATATAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCTACATTATTTCCAAATAGGAGCAAAAAAATAAATATAACAAA  200

seq1  AATCACACCACCTAAAATGTATTTTGAGTCAATGATAGCATACAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACCACCTAAAATGTATTTTGAGTCAATGATAGCATACAAAAAAA  250

seq1  AAGTGTTTGCTGAAACAAAACAGGCTTTGAGGCAAATCCACGGTGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGCTGAAACAAAACAGGCTTTGAGGCAAATCCACGGTGCTGTA  300

seq1  ATAGATCATGAAAAATAATCATACCCATAAGAAATCACTTTGGATCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCATGAAAAATAATCATACCCATAAGAAATCACTTTGGATCATTA  350

seq1  ACAGCAGTATAGATTTCCATCAATTTAAATGACCCTTGAAAATGAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTATAGATTTCCATCAATTTAAATGACCCTTGAAAATGAAGCAC  400

seq1  AATATTTACTTCCTTGGCTTTTCTTCAAGTCTTAGGAAAAATATTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACTTCCTTGGCTTTTCTTCAAGTCTTAGGAAAAATATTGATTC  450

seq1  GGAACTCTGAAATCAAAGCCAAGAGGTTAAAATAAGAGAAACTGCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGAAATCAAAGCCAAGAGGTTAAAATAAGAGAAACTGCCTTCA  500

seq1  CTCTTTACTACTGAAACCACGGAAGAAATGAAAACACAGCCCTCGGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACTACTGAAACCACGGAAGAAATGAAAACACAGCCCTCGGCAGT  550

seq1  AACAGTGTTAATTATCTACATTATTTTTCCTGGTGTATGCTATCGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTTAATTATCTACATTATTTTTCCTGGTGTATGCTATCGGGAAA  600

seq1  AAAAAAAAAAAGCAGCCCATTAACCTTGTGGAATGTATTCTCATAGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCAGCCCATTAACCTTGTGGAATGTATTCTCATAGGCAC  650

seq1  CGCACAGCAAGAGTGTACACTCAGTCCCAAATTATGTCACTTCCTCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGCAAGAGTGTACACTCAGTCCCAAATTATGTCACTTCCTCAGGT  700

seq1  CTGGTGTCTTCAAAGGTTACTTCCTCCAGCTACTGAGGGTCAGAGTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCTTCAAAGGTTACTTCCTCCAGCTACTGAGGGTCAGAGTCCTT  750

seq1  AGAGCAGCAGGTCCCTGAGAGTTAGCACGTTGTCATCTGAAAGACCTCAT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCA-GTCCCTGAGAGTTAGCACGTTGTCATCTGAAAGACCTCAT  799

seq1  CTTCCAATTCAGAAGAAATATGCCTTTCATTTAGTGCACAAGAAATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATTCAGAAGAAATATGCCTTTCATTTAGTGCACAAGAAATAATA  849

seq1  GCAAACAACAGAATGCAATCCATATAGATCCTTAATA-TTCTCCTGAAAA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAAACAACAGAATGCAATCCATATAGATCCTTAATATTTCTCCTGAAAA  899

seq1  ATGCCTCCTTAATCAATATCATTCACTCTACTGTATGAAAATAGATGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTTAATCAATATCATTCACTCTACTGTATGAAAATAGATGACA  949

seq1  CTCATTCTCAACCATTCCATTATTCTGCTACCTGGGATTCTGAACTTTGT  999
      |||||||||||||||||||||| |||||||||||||| |||| |||||||
seq2  CTCATTCTCAACCATTCCATTA-TCTGCTACCTGGGA-TCTG-ACTTTGT  996

seq1  TTTGT-GTG-TGTGGTTTGGTTTTATTGTTTGTTTGTTTGTTTGCAATAA  1047
      || || ||| ||||||||| || | |||     ||||||| |||| ||| 
seq2  TTGGTGGTGTTGTGGTTTGTTTATGTTG-----TTGTTTG-TTGC-ATA-  1038

seq1  CAAAAGTAGGATAATGCTAATTTGAAAGGAGAGCAAAGAGCAGCGCTTGC  1097
        |||||| ||| ||||| ||||| ||||||||||||||||| ||| |||
seq2  -CAAAGTA-GAT-ATGCT-ATTTG-AAGGAGAGCAAAGAGCA-CGC-TGC  1081

seq1  TAATATGCCTTAATATTGAGTT  1119
      | ||||||||||||| ||||||
seq2  T-ATATGCCTTAATA-TGAGTT  1101


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