BAC Information

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BAC

Clone NameB6Ng01-252K20
Chromosome6 (Build37)
Map Location 55,280,606 - 55,432,517
singlet/doubletdoublet
Overlap geneAqp1, Ghrhr, Adcyap1r1
Upstream geneEG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik
Downstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K20.bB6Ng01-252K20.g
ACCGA059608GA059609
length984997
definitionB6Ng01-252K20.b B6Ng01-252K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,280,606 - 55,281,596)(55,431,508 - 55,432,517)
sequence
gaattcttcagcagagcaatgtccctgtcatgcctctgggcaagcagtgt
cactggggacacagcccagaatgagaggctttcatggggatggtgtctgg
gacctactgggctttgcataccggaaacctgaaacccccaaagtgtcaga
cagaccttggccttggaaatctctgattctcctgcaacatcaccagaggg
gagcccagaaaaccggatatgaccgagaggtgcaggataagaccccaatg
ccagagaaggcacagctcagaggtattcagagaaggggtgtgccttcaag
ggaaacactgccaaggtctggagctcctactttgtagcctgggtctgaac
attttggtagaatctgtggggattgtggagagtaggggacagcttgagtg
tggatttctgaagccctcagaagctgagctgacaggatggcgatggggga
gctgctggtttggaggggtagttgaaggctgctctgtaggttccaggtct
ctcttctgcccctgtattgtggtatctttcaagaaaagctctttttaaat
cccatgcagctgtctaaggaggtagccttccatcaggaagggaagaaggg
ggagctgggtctggctagcgcatcagaagaacacagaatgtcagactatt
atgcatcaacccagatgccctcaccccaggctctgagccatgtctccttt
cctttctgagccccagtttctccaaggacttgagagcaaatggtttctgg
atctcttctcttgaagttctataatgtagcaaggcaagacttggagatgt
ctaaaaaaggctaggacagcaggagcatgaagctactgccgcaggctggg
cccaagagcacagaaggacccagagtgaggaagcccttccaaacacttac
acacatgacacttcctctcaggcctctacacgacagcagagccctgtctt
gccttgctttccccagggtgtggtctgctgcccg
gaattcaaaaatgtaactaagccaagaagccacaaaagctgatctcttcc
ctggatggccccaataacccaccagatgatacagggcaggaaagaaccct
agactcaatcagtgcccaggctggagaatatctcagaggaagcaaagaaa
acctggacagacagggtgttttgctatattcttggagacaatcgattttc
ctccaaattggtatataattcaacgcagatcttcaccagaccttttctta
tgagttaaaagtcaagtcacttcctgtccaaaagtctacctaactaagtg
gatgtgcaaaaaaaaaaaaaaaaattcaacagaacaaatgagaaatttgt
atataacctggtaaaacatacagggtcacagtagctggcacagtcccctg
ggcaagcatattagtagtatgaaagtgaaggtctccagtccacaatgata
acttttcaacctatacgtttatgtaaagtgactgagaatgggaaatttgc
agccatcaaaaatagaaatgtaaaaaatatatatatagcattttagtaaa
gacagagatttaatagaacctttcttaaagatacatcttgttaacctaca
ccacaacaatgctgtgaagcaattacgagatttgtatagctcacgctgat
gggaatcctccataaacaagaaataaggccgacaatcagagaggggaagc
ccaaggatcccagggcagggagtcatgctggccaggaacatgacaaagta
tagaagagaagtcactgctctttgcctgatcaaaaagacatctgctagag
gacagaacaaaagttcacaagatgacataagcataagccaccaaaatgct
gtttagcctaagtgcttaaacccacatccaacacagagaacagacatgct
tctcagagcctccctccccctccacagacatacacatccaatgatgtact
gggagtacaggagtgactggggatggagtcacttccgaggagatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55280606_55281596
seq2: B6Ng01-252K20.b_51_1034

seq1  GAATTCTTCAGCAGAGCAATGTCCCTGTCATGCCTCTGGGCAAGCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCAGAGCAATGTCCCTGTCATGCCTCTGGGCAAGCAGTGT  50

seq1  CACTGGGGACACAGCCCAGAATGAGAGGCTTTCATGGGGATGGTGTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGACACAGCCCAGAATGAGAGGCTTTCATGGGGATGGTGTCTGG  100

seq1  GACCTACTGGGCTTTGCATACCGGAAACCTGAAACCCCCAAAGTGTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACTGGGCTTTGCATACCGGAAACCTGAAACCCCCAAAGTGTCAGA  150

seq1  CAGACCTTGGCCTTGGAAATCTCTGATTCTCCTGCAACATCACCAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGGCCTTGGAAATCTCTGATTCTCCTGCAACATCACCAGAGGG  200

seq1  GAGCCCAGAAAACCGGATATGACCGAGAGGTGCAGGATAAGACCCCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGAAAACCGGATATGACCGAGAGGTGCAGGATAAGACCCCAATG  250

seq1  CCAGAGAAGGCACAGCTCAGAGGTATTCAGAGAAGGGGTGTGCCTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAGGCACAGCTCAGAGGTATTCAGAGAAGGGGTGTGCCTTCAAG  300

seq1  GGAAACACTGCCAAGGTCTGGAGCTCCTACTTTGTAGCCTGGGTCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACTGCCAAGGTCTGGAGCTCCTACTTTGTAGCCTGGGTCTGAAC  350

seq1  ATTTTGGTAGAATCTGTGGGGATTGTGGAGAGTAGGGGACAGCTTGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTAGAATCTGTGGGGATTGTGGAGAGTAGGGGACAGCTTGAGTG  400

seq1  TGGATTTCTGAAGCCCTCAGAAGCTGAGCTGACAGGATGGCGATGGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAAGCCCTCAGAAGCTGAGCTGACAGGATGGCGATGGGGGA  450

seq1  GCTGCTGGTTTGGAGGGGTAGTTGAAGGCTGCTCTGTAGGTTCCAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGTTTGGAGGGGTAGTTGAAGGCTGCTCTGTAGGTTCCAGGTCT  500

seq1  CTCTTCTGCCCCTGTATTGTGGTATCTTTCAAGAAAAGCTCTTTTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCCCCTGTATTGTGGTATCTTTCAAGAAAAGCTCTTTTTAAAT  550

seq1  CCCATGCAGCTGTCTAAGGAGGTAGCCTTCCATCAGGAAGGGAAGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCAGCTGTCTAAGGAGGTAGCCTTCCATCAGGAAGGGAAGAAGGG  600

seq1  GGAGCTGGGTCTGGCTAGCGCATCAGAAGAACACAGAATGTCAGACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGTCTGGCTAGCGCATCAGAAGAACACAGAATGTCAGACTATT  650

seq1  ATGCATCAACCCAGATGCCCTCACCCCAGGCTCTGAGCCATGTCTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAACCCAGATGCCCTCACCCCAGGCTCTGAGCCATGTCTCCTTT  700

seq1  CCTTTCTGAGCCCCAGTTTCTCCAAGGACTTGAGAGCAAATGGTTTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAGCCCCAGTTTCTCCAAGGACTTGAGAGCAAATGGTTTCTGG  750

seq1  ATCTCTTCTCTTGAAGTTCTATAATGTAGCAAGGCAAAGAC-TGGAGATG  799
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  ATCTCTTCTCTTGAAGTTCTATAATGTAGCAAGGC-AAGACTTGGAGATG  799

seq1  TCTAAAAAAGGCTAGGACAGCAGGGAGCAGGAAGCTACTGCCGCAGGGCT  849
      |||||||||||||||||||||| |||||| ||||||||||||||| ||||
seq2  TCTAAAAAAGGCTAGGACAGCA-GGAGCATGAAGCTACTGCCGCA-GGCT  847

seq1  GGGCCC-AGAGCACAGAAGGAACCCAGAGTGAGGAAGCCCTCCCAAACCA  898
      |||||| ||||||||||||| |||||||||||||||||||| ||||| ||
seq2  GGGCCCAAGAGCACAGAAGG-ACCCAGAGTGAGGAAGCCCTTCCAAA-CA  895

seq1  CTTACACACATGACACTTCCTCTCAGGGCCCCCACACGACAGCAGAGCCC  948
      ||||||||||||||||||||||||| |||| | |||||||||||||| ||
seq2  CTTACACACATGACACTTCCTCTCA-GGCCTCTACACGACAGCAGAG-CC  943

seq1  CTGTCCTGCCCTGCTTTCCCCAAGGGTGTGGTCTGGCTGCCCG  991
      ||||| |||| |||||||||| |||||||||||| ||||||||
seq2  CTGTCTTGCCTTGCTTTCCCC-AGGGTGTGGTCT-GCTGCCCG  984

seq1: chr6_55431508_55432517
seq2: B6Ng01-252K20.g_68_1064 (reverse)

seq1  TACATCTCCTCTGGAAAGGTGACTCCATCCCCCAGTCACTCCCTGTACTC  50
      ||||||||||| ||||  |||||||||| ||||||||||| |||||||||
seq2  TACATCTCCTC-GGAA--GTGACTCCAT-CCCCAGTCACT-CCTGTACTC  45

seq1  CCAGTACCATCATTTGATGGTGTATGGTCCTGTGGAGGGGGAGGGAGGCT  100
      |||||| ||||||| ||| |||||||   |||||||||||||||||||||
seq2  CCAGTA-CATCATTGGAT-GTGTATG--TCTGTGGAGGGGGAGGGAGGCT  91

seq1  CCTGAAGAGCATGTCTGTTCCTCTGTGTTGGATGTGGGTTTAAGCACTTA  150
       ||||  |||||||||||| ||||||||||||||||||||||||||||||
seq2  -CTGAGAAGCATGTCTGTT-CTCTGTGTTGGATGTGGGTTTAAGCACTTA  139

seq1  GGCTAAACAGCATTTTGGTGGCTTATGCTTATGTCATTCTTGTGAACTTT  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCTAAACAGCATTTTGGTGGCTTATGCTTATGTCA-TCTTGTGAACTTT  188

seq1  TGTTCTGTCCTCTAGCAGATTGTCTTTTTGATCAGGCAAAGAGCAGTGAC  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTCTGTCCTCTAGCAGA-TGTCTTTTTGATCAGGCAAAGAGCAGTGAC  237

seq1  TTCTCTTCTATACTTTGTCATGTTCCTGGCCAGCATGACTCCCTGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTATACTTTGTCATGTTCCTGGCCAGCATGACTCCCTGCCCTG  287

seq1  GGATCCTTGGGCTTCCCCTCTCTGATTGTCGGCCTTATTTCTTGTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTGGGCTTCCCCTCTCTGATTGTCGGCCTTATTTCTTGTTTATG  337

seq1  GAGGATTCCCATCAGCGTGAGCTATACAAATCTCGTAATTGCTTCACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCCCATCAGCGTGAGCTATACAAATCTCGTAATTGCTTCACAGC  387

seq1  ATTGTTGTGGTGTAGGTTAACAAGATGTATCTTTAAGAAAGGTTCTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTGGTGTAGGTTAACAAGATGTATCTTTAAGAAAGGTTCTATTA  437

seq1  AATCTCTGTCTTTACTAAAATGCTATATATATATTTTTTACATTTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTCTTTACTAAAATGCTATATATATATTTTTTACATTTCTATT  487

seq1  TTTGATGGCTGCAAATTTCCCATTCTCAGTCACTTTACATAAACGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGCTGCAAATTTCCCATTCTCAGTCACTTTACATAAACGTATAG  537

seq1  GTTGAAAAGTTATCATTGTGGACTGGAGACCTTCACTTTCATACTACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAGTTATCATTGTGGACTGGAGACCTTCACTTTCATACTACTAA  587

seq1  TATGCTTGCCCAGGGGACTGTGCCAGCTACTGTGACCCTGTATGTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGCCCAGGGGACTGTGCCAGCTACTGTGACCCTGTATGTTTTAC  637

seq1  CAGGTTATATACAAATTTCTCATTTGTTCTGTTGAATTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATATACAAATTTCTCATTTGTTCTGTTGAATTTTTTTTTTTTTT  687

seq1  TTTGCACATCCACTTAGTTAGGTAGACTTTTGGACAGGAAGTGACTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACATCCACTTAGTTAGGTAGACTTTTGGACAGGAAGTGACTTGAC  737

seq1  TTTTAACTCATAAGAAAAGGTCTGGTGAAGATCTGCGTTGAATTATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTCATAAGAAAAGGTCTGGTGAAGATCTGCGTTGAATTATATAC  787

seq1  CAATTTGGAGGAAAATCGATTGTCTCCAAGAATATAGCAAAACACCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGGAGGAAAATCGATTGTCTCCAAGAATATAGCAAAACACCCTGT  837

seq1  CTGTCCAGGTTTTCTTTGCTTCCTCTGAGATATTCTCCAGCCTGGGCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGGTTTTCTTTGCTTCCTCTGAGATATTCTCCAGCCTGGGCACT  887

seq1  GATTGAGTCTAGGGTTCTTTCCTGCCCTGTATCATCTGGTGGGTTATTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGTCTAGGGTTCTTTCCTGCCCTGTATCATCTGGTGGGTTATTGG  937

seq1  GGCCATCCAGGGAAGAGATCAGCTTTTGTGGCTTCTTGGCTTAGTTACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCAGGGAAGAGATCAGCTTTTGTGGCTTCTTGGCTTAGTTACAT  987

seq1  TTTTGAATTC  1010
      ||||||||||
seq2  TTTTGAATTC  997