BAC Information

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BAC

Clone NameB6Ng01-252M01
Chromosome6 (Build37)
Map Location 20,073,440 - 20,169,828
singlet/doubletdoublet
Overlap genenone
Upstream geneEif3s6-ps4
Downstream geneLOC100040838, Kcnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252M01.bB6Ng01-252M01.g
ACCGA059665GA059666
length1,1011,130
definitionB6Ng01-252M01.b B6Ng01-252M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,168,728 - 20,169,828)(20,073,440 - 20,074,578)
sequence
gaattcttagacattcttagttttgtgtgggtctatttatttagttctcc
tttttttagtactgtgaaaatttcataaaatgaataattgattatattca
cccattctcactccacttcccagatccacccctctttcttactgacacaa
atatgtattctcttcttcaaactcatttggcctacttggtgctacttgcc
tattcttagatgtaggacctgttgtactggagcaagatcaaccttctaag
tgatacacctttacaagtgacactccttcttacaggaactatagaatttt
ataggtatgaataattacacaccagcttcttcagagaacaagaatgtagg
actcaatcaatttttcagatttatatctggtacctagtcggataaaatct
ttgtaagaaaatgtttcaaaggatattttctttcttttcctaatttctca
tttcctattcaaaactgaagtctattttctagtaaagtgataccagtact
gaattagattcattcagtatatttaagtattttgatcactataaagggat
gtataaaatgtcattaattgaattgaaactgtctaagacacataataaca
attaaggttgtttcacttgcatcaccaaaagatgatagactataaggata
gagaattttttgctacagggtgcttacgtatttgtatcagagacaacata
ggccagtactttagaaaataattcaaggggtaactacagaaaactaatgc
aggctaattggatagactagatgatgtattcatgatgatcttcctttctg
accaagtgcatatcactgtgtgaagcagaagaaaatgcacacacacacac
acacacacacacacacacacacacacacacacacacacacacacagagag
agagagggctttctggactctgaaggcattttagacatggaaattactag
catacacctataatcactgcctttgtgtgggagtttaagaaaccactgtg
aaatccactaataatctatctctcaatgacataactatcataaatcccca
ccttattttcttaaaaaaaattatatacgttcaatctgtaccttacaatg
c

gaattcagttttgatgtctttactaccaatactttctacacatgtccaaa
ccattattctcttatcttctacccagaaacctaaaaaatcagtgcctata
actttggttcatatacttatgaattctgtggcattagcacgtataaacag
tatataggctgagacataaaattcttaaaatgtactactaaaggaaacga
agccaagaggtgagcttcattaaaccaccaaggagtcataaatcttgtct
ttccatgcttctgatagacatttggagagcattgtttatgttattcctga
tgtgaccaatctttttttcctcctcttttctattttgtttgtttgttttt
ttctctattgttttgtctacttaaaataattgtactacctattcccatga
ccttagaacttatgctagcaactatcctcaaaagtggttatcttttatag
gattgttttccccttttacttaaattccatcatctgttccctgaaagtgc
agcatcacaccactgaccttaaatgaagactactttggaaatgaaaaaaa
tgtataaaaattactgctagcagtttaataaatcattcctgatgtatgct
gagtgaatatttctaaaatcaatgaaaatgaaattagtttagagttgagg
gcaaattataattccattttaatctggtcacctataaggaagacagagtt
tagcaatcttaatagtgatttaggttctgtaactcacagatcattcagtt
ctttggctaaactgtcatttatcttgtagtgactaatgtttaaaaacagg
tctcaaggatagttccacttaacattagcagtgaaacattactggtctat
atgtccagtaagcttgttctgagagtactatgtttctaattaatatggag
ggagaacaggaagtcgaggcacacaaaatatattaaatcatctttgatca
catgaaatgaaaaaaaaagactaaaaaagaatctcaagtgagcaaggata
tctgactttggatatttttatgctgaaaggtgatgtctatccacctcata
tattctgactctcttgttcttctgtttatctgatgtgcatgtcgatgtac
tgtccatcagtatttttatcttatttgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20168728_20169828
seq2: B6Ng01-252M01.b_46_1146 (reverse)

seq1  GCATTGTAAAGTACAGA-TGGACGTATATAATTTTATAAGAAAAAATAAG  49
      ||||||||| ||||||| || |||||||||||||| |   | ||||||||
seq2  GCATTGTAAGGTACAGATTGAACGTATATAATTTTTTTTAAGAAAATAAG  50

seq1  GT-GAGATTTATGAATAG-TATGTCATTGAGAGATAGATAATTAGTGGAA  97
      || | |||||||| |||| |||||||||||||||||||| |||||||| |
seq2  GTGGGGATTTATG-ATAGTTATGTCATTGAGAGATAGATTATTAGTGG-A  98

seq1  TTTCACAGT-GTTTCTTAAAACTCCCACAACAAAGGCAGTGATTATAGGT  146
      ||||||||| ||||||| |||||||||| |||||||||||||||||||||
seq2  TTTCACAGTGGTTTCTT-AAACTCCCAC-ACAAAGGCAGTGATTATAGGT  146

seq1  GTATGCTAGTAATTTCCATGTCTAAAATGCCTTCAGAGTCCAGAAAGCCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTAGTAATTTCCATGTCTAAAATGCCTTCAGAGTCCAGAAAGCCC  196

seq1  TCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  246

seq1  TGTGTGTGTGTGTGTGTGCATTTTCTTCTGCTTCACACAGTGATATGCAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGCATTTTCTTCTGCTTCACACAGTGATATGCAC  296

seq1  TTGGTCAGAAAGGAAGATCATCATGAATACATCATCTAGTCTATCCAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGAAAGGAAGATCATCATGAATACATCATCTAGTCTATCCAATT  346

seq1  AGCCTGCATTAGTTTTCTGTAGTTACCCCTTGAATTATTTTCTAAAGTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCATTAGTTTTCTGTAGTTACCCCTTGAATTATTTTCTAAAGTAC  396

seq1  TGGCCTATGTTGTCTCTGATACAAATACGTAAGCACCCTGTAGCAAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTATGTTGTCTCTGATACAAATACGTAAGCACCCTGTAGCAAAAAA  446

seq1  TTCTCTATCCTTATAGTCTATCATCTTTTGGTGATGCAAGTGAAACAACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATCCTTATAGTCTATCATCTTTTGGTGATGCAAGTGAAACAACC  496

seq1  TTAATTGTTATTATGTGTCTTAGACAGTTTCAATTCAATTAATGACATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTATTATGTGTCTTAGACAGTTTCAATTCAATTAATGACATTT  546

seq1  TATACATCCCTTTATAGTGATCAAAATACTTAAATATACTGAATGAATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCCCTTTATAGTGATCAAAATACTTAAATATACTGAATGAATCT  596

seq1  AATTCAGTACTGGTATCACTTTACTAGAAAATAGACTTCAGTTTTGAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTACTGGTATCACTTTACTAGAAAATAGACTTCAGTTTTGAATA  646

seq1  GGAAATGAGAAATTAGGAAAAGAAAGAAAATATCCTTTGAAACATTTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGAAATTAGGAAAAGAAAGAAAATATCCTTTGAAACATTTTCT  696

seq1  TACAAAGATTTTATCCGACTAGGTACCAGATATAAATCTGAAAAATTGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGATTTTATCCGACTAGGTACCAGATATAAATCTGAAAAATTGAT  746

seq1  TGAGTCCTACATTCTTGTTCTCTGAAGAAGCTGGTGTGTAATTATTCATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTACATTCTTGTTCTCTGAAGAAGCTGGTGTGTAATTATTCATA  796

seq1  CCTATAAAATTCTATAGTTCCTGTAAGAAGGAGTGTCACTTGTAAAGGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAATTCTATAGTTCCTGTAAGAAGGAGTGTCACTTGTAAAGGTG  846

seq1  TATCACTTAGAAGGTTGATCTTGCTCCAGTACAACAGGTCCTACATCTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTAGAAGGTTGATCTTGCTCCAGTACAACAGGTCCTACATCTAA  896

seq1  GAATAGGCAAGTAGCACCAAGTAGGCCAAATGAGTTTGAAGAAGAGAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCAAGTAGCACCAAGTAGGCCAAATGAGTTTGAAGAAGAGAATA  946

seq1  CATATTTGTGTCAGTAAGAAAGAGGGGTGGATCTGGGAAGTGGAGTGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTGTCAGTAAGAAAGAGGGGTGGATCTGGGAAGTGGAGTGAGA  996

seq1  ATGGGTGAATATAATCAATTATTCATTTTATGAAATTTTCACAGTACTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGAATATAATCAATTATTCATTTTATGAAATTTTCACAGTACTAA  1046

seq1  AAAAAGGAGAACTAAATAAATAGACCCACACAAAACTAAGAATGTCTAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGAACTAAATAAATAGACCCACACAAAACTAAGAATGTCTAAG  1096

seq1  AATTC  1101
      |||||
seq2  AATTC  1101


seq1: chr6_20073440_20074578
seq2: B6Ng01-252M01.g_66_1195

seq1  GAATTCAGTTTTGATGTCTTTACTACCAATACTTTCTACACATGTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTGATGTCTTTACTACCAATACTTTCTACACATGTCCAAA  50

seq1  CCATTATTCTCTTATCTTCTACCCAGAAACCTAAAAAATCAGTGCCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTCTCTTATCTTCTACCCAGAAACCTAAAAAATCAGTGCCTATA  100

seq1  ACTTTGGTTCATATACTTATGAATTCTGTGGCATTAGCACGTATAAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTTCATATACTTATGAATTCTGTGGCATTAGCACGTATAAACAG  150

seq1  TATATAGGCTGAGACATAAAATTCTTAAAATGTACTACTAAAGGAAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGCTGAGACATAAAATTCTTAAAATGTACTACTAAAGGAAACGA  200

seq1  AGCCAAGAGGTGAGCTTCATTAAACCACCAAGGAGTCATAAATCTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGGTGAGCTTCATTAAACCACCAAGGAGTCATAAATCTTGTCT  250

seq1  TTCCATGCTTCTGATAGACATTTGGAGAGCATTGTTTATGTTATTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCTTCTGATAGACATTTGGAGAGCATTGTTTATGTTATTCCTGA  300

seq1  TGTGACCAATCTTTTTTTCCTCCTCTTTTCTATTTTGTTTGTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAATCTTTTTTTCCTCCTCTTTTCTATTTTGTTTGTTTGTTTTT  350

seq1  TTCTCTATTGTTTTGTCTACTTAAAATAATTGTACTACCTATTCCCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTGTTTTGTCTACTTAAAATAATTGTACTACCTATTCCCATGA  400

seq1  CCTTAGAACTTATGCTAGCAACTATCCTCAAAAGTGGTTATCTTTTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAACTTATGCTAGCAACTATCCTCAAAAGTGGTTATCTTTTATAG  450

seq1  GATTGTTTTCCCCTTTTACTTAAATTCCATCATCTGTTCCCTGAAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTTCCCCTTTTACTTAAATTCCATCATCTGTTCCCTGAAAGTGC  500

seq1  AGCATCACACCACTGACCTTAAATGAAGACTACTTTGGAAATGAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACACCACTGACCTTAAATGAAGACTACTTTGGAAATGAAAAAAA  550

seq1  TGTATAAAAATTACTGCTAGCAGTTTAATAAATCATTCCTGATGTATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAATTACTGCTAGCAGTTTAATAAATCATTCCTGATGTATGCT  600

seq1  GAGTGAATATTTCTAAAATCAATGAAAATGAAATTAGTTTAGAGTTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATATTTCTAAAATCAATGAAAATGAAATTAGTTTAGAGTTGAGG  650

seq1  GCAAATTATAATTCCATTTTAATCTGGTCACCTATAAGGAAGACAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTATAATTCCATTTTAATCTGGTCACCTATAAGGAAGACAGAGTT  700

seq1  TAGCAATCTTAATAGTGATTTAGGTTCTGTAACTCACAGATCATTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCTTAATAGTGATTTAGGTTCTGTAACTCACAGATCATTCAGTT  750

seq1  CTTTGGCTAAACTGTCATTTATCTTGTAGTGACTAATGTTTAAAAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTAAACTGTCATTTATCTTGTAGTGACTAATGTTTAAAAACAGG  800

seq1  TCTCAAGGATAGTTCCACTTAACATTAGCAGTGAAACATTACTGGTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGATAGTTCCACTTAACATTAGCAGTGAAACATTACTGGTCTAT  850

seq1  ATGTCCAGTAAGCTTGTTCTGAGAGTACTATGTTTCTAATTAATATGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGTAAGCTTGTTCTGAGAGTACTATGTTTCTAATTAATATGGAG  900

seq1  GGAGAACAGGAAGTCGAGGCACACAAAATATATTAAATCATCTTTGATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGGAAGTCGAGGCACACAAAATATATTAAATCATCTTTGATCA  950

seq1  CATGAAATGAAAAAAAAAAGACTAAAAAAGAATCTCAAGTGAGCAAGGAT  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATG-AAAAAAAAAGACTAAAAAAGAATCTCAAGTGAGCAAGGAT  999

seq1  ATCTGAACTTTGGATTAATTTTTATGCTGAAAGGGTGATGTCTATCCACC  1050
      ||||| |||||||||  ||||||||||||||| |||||||||||||||||
seq2  ATCTG-ACTTTGGAT--ATTTTTATGCTGAAA-GGTGATGTCTATCCACC  1045

seq1  TCATATA-TCTGACCTTCCTTCCTTGTCTCTGTTATCTGATGTTTGCATT  1099
      ||||||| ||||| ||  |||  |  ||| | ||||||||||  |||| |
seq2  TCATATATTCTGA-CTCTCTTGTTCTTCTGT-TTATCTGATG--TGCA-T  1090

seq1  GTCGATGTACTGTTCATCAGTA-TTTTATCTTATTTTGCAC  1139
      ||||||||||||| |||||||| |||||||||| |||||||
seq2  GTCGATGTACTGTCCATCAGTATTTTTATCTTA-TTTGCAC  1130


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