BAC Information

Click to search

BAC

Clone NameB6Ng01-253O03
Chromosome6 (Build37)
Map Location 102,679,573 - 102,680,770
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666084, Cntn3, EG666123
Downstream geneChl1, LOC666141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253O03.bB6Ng01-253O03.g
ACCGA060495GA060496
length1,2081,217
definitionB6Ng01-253O03.b B6Ng01-253O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgcacattcttgtattactgctgttttgaaaattgtctcaag
tggtggcatagttatctctatttcaaaagtgtttccagaaaattaaaagt
agcaaaatatgattgaaattattcaggcccagtggcacagcctataacta
cttctccttgggatgctgaaagatggatattacaaattcaaggtcagtct
ggggtatataatgagctcaaggtagccttggaaacttagaccctttcttt
aaaaaaaaagataaaaaggaaggctggagaagtagcttggttgtcaagca
cttgtctggcatatacaaagtgtcaggttcaaaccatagtgctcaaaata
aaatattaaaatcaactggtataaataacagtggcatttttctaacccta
tttatgttccaggacataagttggacttttcatacaatttatttcatcga
aaccctaaactgctgttacattgtaattactactattttactatctaaaa
atgaggaaacactgcaagcacaattactgcatttgattgagctatcaaaa
aaagaaatgcttaaaataaattaacttcttaggctctaaagccaggccca
catcagaatagtgcaaacagatattaatttcccctttaagaaggacaaca
atgtgaattgagtgcataggactcagaaccattctcaatattcaacttcc
aaagctaagacagggtctgtagagcacaagacccatttccttgttaattt
actaaccacatttgcttgagattcccaaggctcttcttacaaatggcatg
cagctcacttcagagccctttatttattttcatttttatagatttgacat
cattattctgtaggcagaaatattttctccatttctaattcctatttgca
taaatatttacttataatcaaactcaccagcatttgtgttcctccaaaga
tctccttatgacacggtctcatctgcttaactctagacacgaatttcgtt
tgttctagcacctcccaatgcccttcgcacaaactgtagtaccaattcat
tatgcatttgtgaataaatgagtaatgcaataaaataaggttaatggaaa
gccctggaggtcccacggtcttgcctcactggattcttcttgccaattac
ctttaactctctttgacttaccagaaattcccatctgaatctacagaggt
gagcaatt
gaattcaacgagagcctacagttctacagagaccagagctgaagacatga
gtcaagatgtttagaagagtccagaagatcatgtatatattggaacaaga
agctataaaattgatgttgccttggatactgtaggatattagagatgtca
gagctatgggatatctactgaggaaagctgctaacaggtagtggagccaa
cccaaaagaacaaagtttgttgctgctgaatgccagatatgctcacagca
gtcaacatagatgaaaggagttggagatatgaagagtgctttgacatcag
acacagagatgcagagtttggagtttgcccagctggcttttgtctttctt
tgatccagtatttcctcaccaggacattttggaataataatatatctcct
gcatgatgatatgttacctgcttttttattttgtttccttaagagattcc
agttaaggattacatgaagctcaggagtgtctttgaactttgaacttttg
tcatttttgagactgttaaagactatgggacttttgaagttggactaaat
ttttttttgcattctgctatgcctaggtatgtccaccatagtctgatgtg
tttgaacaagcctatgtaggtcaaggaatgtggtggtttgaatatgcttg
gcccatggagtggcattattaggaggtgtggccttgttggagtagatgtg
gccttgttagaggaagtgtgtcactgaaggagtgggctttgaagctctgc
cccatgtggaagtatcagtttactcctggctgatgtcagatcaagatgta
gaaatctcagctcttttctccagcaggtctacctgcatgctaccatgctt
tcctgctatgataatggacaaaacctctgaaaactgtatgccattcccaa
tttaatgtttgctctttataagagttgttcttggtcaatagtgtctcttc
atagcaattagaaatccctaacttaatacataaaatactttaacgaatta
tagttctctagagtcacagaacttatggaatgtcttttctatattggaat
aaatttattttgatggcttaacaggtctgtaagttcaaataaacaaacca
tgggatcggttgtgtgatggggaagtcagagaattataggtaatttgctc
aagttccacaaacctggatgattcagcttggtccttcctgtatgaagaga
ttagacttctctcgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102679573_102680770
seq2: B6Ng01-253O03.b_43_1250

seq1  GAATTCTATGCACATTCTTGTATTACTGCTGTTTTGAAAATTGTCTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCACATTCTTGTATTACTGCTGTTTTGAAAATTGTCTCAAG  50

seq1  TGGTGGCATAGTTATCTCTATTTCAAAAGTGTTTCCAGAAAATTAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCATAGTTATCTCTATTTCAAAAGTGTTTCCAGAAAATTAAAAGT  100

seq1  AGCAAAATATGATTGAAATTATTCAGGCCCAGTGGCACAGCCTATAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATATGATTGAAATTATTCAGGCCCAGTGGCACAGCCTATAACTA  150

seq1  CTTCTCCTTGGGATGCTGAAAGATGGATATTACAAATTCAAGGTCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTGGGATGCTGAAAGATGGATATTACAAATTCAAGGTCAGTCT  200

seq1  GGGGTATATAATGAGCTCAAGGTAGCCTTGGAAACTTAGACCCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATATAATGAGCTCAAGGTAGCCTTGGAAACTTAGACCCTTTCTTT  250

seq1  AAAAAAAAAGATAAAAAGGAAGGCTGGAGAAGTAGCTTGGTTGTCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGATAAAAAGGAAGGCTGGAGAAGTAGCTTGGTTGTCAAGCA  300

seq1  CTTGTCTGGCATATACAAAGTGTCAGGTTCAAACCATAGTGCTCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGGCATATACAAAGTGTCAGGTTCAAACCATAGTGCTCAAAATA  350

seq1  AAATATTAAAATCAACTGGTATAAATAACAGTGGCATTTTTCTAACCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAAATCAACTGGTATAAATAACAGTGGCATTTTTCTAACCCTA  400

seq1  TTTATGTTCCAGGACATAAGTTGGACTTTTCATACAATTTATTTCATCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCCAGGACATAAGTTGGACTTTTCATACAATTTATTTCATCGA  450

seq1  AACCCTAAACTGCTGTTACATTGTAATTACTACTATTTTACTATCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAAACTGCTGTTACATTGTAATTACTACTATTTTACTATCTAAAA  500

seq1  ATGAGGAAACACTGCAAGCACAATTACTGCATTTGATTGAGCTATCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAACACTGCAAGCACAATTACTGCATTTGATTGAGCTATCAAAA  550

seq1  AAAGAAATGCTTAAAATAAATTAACTTCTTAGGCTCTAAAGCCAGGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGCTTAAAATAAATTAACTTCTTAGGCTCTAAAGCCAGGCCCA  600

seq1  CATCAGAATAGTGCAAACAGATATTAATTTCCCCTTTAAGAAGGACAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAATAGTGCAAACAGATATTAATTTCCCCTTTAAGAAGGACAACA  650

seq1  ATGTGAATTGAGTGCATAGGACTCAGAACCATTCTCAATATTCAACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTGAGTGCATAGGACTCAGAACCATTCTCAATATTCAACTTCC  700

seq1  AAAGCTAAGACAGGGTCTGTAGAGCACAAGACCCATTTCCTTGTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAGACAGGGTCTGTAGAGCACAAGACCCATTTCCTTGTTAATTT  750

seq1  ACTAACCACATTTGCTTGAGATTCCCAAGGCTCTTCTTACAAATGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCACATTTGCTTGAGATTCCCAAGGCTCTTCTTACAAATGGCATG  800

seq1  CAGCTCACTTCAGAGCCCTTTATTTATTTTCATTTTTATAGATTTGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACTTCAGAGCCCTTTATTTATTTTCATTTTTATAGATTTGACAT  850

seq1  CATTATTCTGTAGGCAGAAATATTTTCTCCATTTCTAATTCCTATTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTGTAGGCAGAAATATTTTCTCCATTTCTAATTCCTATTTGCA  900

seq1  TAAATATTTACTTATAATCAAACTCACCAGCATTTGTGTTCCTCCAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTACTTATAATCAAACTCACCAGCATTTGTGTTCCTCCAAAGA  950

seq1  TCTCCTTATGACAACGGTCTCATCTGCTTAACTCTAGACACGAATTTCGT  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TCTCCTTATGAC-ACGGTCTCATCTGCTTAACTCTAGACACGAATTTCG-  998

seq1  TTTGTTCTAGCACCTCCCAATGCCCTTCGCACAAACTGTAGTACC-ATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGTTCTAGCACCTCCCAATGCCCTTCGCACAAACTGTAGTACCAATTC  1048

seq1  ATTATGCATTTGTTGAATAAATGAGTAAATGCAAT-AAATAAG--TAAT-  1095
      |||||||||||| ||||||||||||| |||||||| |||||||  |||| 
seq2  ATTATGCATTTG-TGAATAAATGAGT-AATGCAATAAAATAAGGTTAATG  1096

seq1  GAAAGCC--TGAAGTCCCAC-GTCT--GCTCACTGAGTTCT--CTGCCAA  1138
      |||||||   || ||||||| ||||   |||||||  ||||   ||||||
seq2  GAAAGCCCTGGAGGTCCCACGGTCTTGCCTCACTGGATTCTTCTTGCCAA  1146

seq1  TTAC---TTACTCTCTTTTACTTACCACAGAATTCCCATCTTTAAATC-A  1184
      ||||   | ||||||||| |||||||| | ||||||||||  | |||| |
seq2  TTACCTTTAACTCTCTTTGACTTACCAGA-AATTCCCATC--TGAATCTA  1193

seq1  CAGA-GTGAGCAATT  1198
      |||| ||||||||||
seq2  CAGAGGTGAGCAATT  1208