BAC Information

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BAC

Clone NameB6Ng01-254A15
Chromosome6 (Build37)
Map Location 28,919,832 - 29,029,965
singlet/doubletdoublet
Overlap geneLOC100041367, Lep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254A15.bB6Ng01-254A15.g
ACCGA060611GA060612
length1,154935
definitionB6Ng01-254A15.b B6Ng01-254A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,919,832 - 28,920,982)(29,029,037 - 29,029,965)
sequence
gaattccaagtccacttgctctggcctcctcgggagggagagacaagagt
aggggcttattcctggaacttcacagctctctccctccttctcctctcca
tcctaaataaagatggcttttttagtctctttcctagactctgattcaca
gatattgaggaggcatctaaagatgagaccagaaccatttggttgggagc
aactgtgttcccataacttatgtatttatagagatgttgtgggggagggc
agacacagctgagcgacctgacatcctggaagtttcccgaccaaggaagg
gccaggagcaggagccctggggcttcagcacctagctaagccagcctgtt
tcttcataaactgactcggaccttgataagccacgaaactgctaacagac
aagataagctgaagggggtttaattcttcatcataggggaatttgtctct
tcctattcccttgggcattctacctttttgggatctttacatttggtctc
tgtctacgacacaaagaacttaataaataggtaattcctcaatggtttcc
tcacatacacaggttttgttagcatttccatatatccatccagtttcttt
tcaatgtcttttattttgtgtatgtgtgccgcgtgcccgtgcgggtgtgt
gtgtgtgtgcgcgcatgtgtgtgtgagtggccagaagcctcagagcccca
ggaactggagttgtaagtggttgggtactgatggcacagtgctgactcaa
ctcctctaccagagagagcaatgtgtgctcttaatctccggccatctccg
ccctctacccacttttcttgaatcagaagccagagtgtcatccttcgaat
caaaagccaccctcctttcaccatcagacctcactaagcaatcaaatttc
aaattctatttgattctacccacctctctctctctccccttccctggatt
tttatcagcctttttactacttggactatagctgcttgtattatgaatgc
tatatgtttccccctcccccaaaacctgcttgcaagagttgtcttgcttg
tagcctctgggaactgcccccagttggcttctgattagtaataagatgcc
aacacgccaatagctgaaggagggcagaccgagccggcaattttaggaat
ttcc
gaattccatcggggcggatgaagggtggctgaaaagggctaaagctcaca
agatgggggatggggaggagcctattccaggcttcagccacatcacagtg
ggtaaggtctaaaaagagcaaagtgtcttactccatagtgatctaagtga
gacaggagacaggaatcctttccctccacaaatggtttgtgggtttctct
tcctgttttaatatcataggatggccaccaagtggtcacttcacacaggg
ggagttggcttccattggcacccagcacacagtacgcttgaggcagagct
tgaggccaggctggctgctgctctttttccctgggagcttcaggcctccc
ctctgcagcatctcacagctggctctccctgctctctccttgtttgattt
gctaaatctctgttttggttcactgtttcacacccactctgacagcctgc
tgtccccccttaaggccctgggacatctgccaggcagtgaaatcaaatgt
gaagttaaatacagctcagatcctcatcatatcctcattgtcttcaccct
cccccgttctcgctatccttctctgggatgcaggatgctcaggcagccag
aaacctcagaaaatgtttatctgagagttttacccgaaagcacagccttt
tatactccatgtatctgtaactgagccttaacagatgccagcactgcgct
gatcttgttcatcttcagctcgagtctgtggttcttttctgaagtagatt
aacaaaggtaagccctttgtcttagtcacagttttatcgctgtgacaaag
cacaatttatgaaaaaaaggcatttagttgtggggtttgcttaaagtttc
aagagggagagtccatggccgtcatggaacatggcggcagataggcaggc
atggcactgggagcagtagctgagcacttaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28919832_28920982
seq2: B6Ng01-254A15.b_50_1203

seq1  GAATTCCAAGTCCACTTGCTCTGGCCTCCTCGGGAGGGAGAGACAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCCACTTGCTCTGGCCTCCTCGGGAGGGAGAGACAAGAGT  50

seq1  AGGGGCTTATTCCTGGAACTTCACAGCTCTCTCCCTCCTTCTCCTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTATTCCTGGAACTTCACAGCTCTCTCCCTCCTTCTCCTCTCCA  100

seq1  TCCTAAATAAAGATGGCTTTTTTAGTCTCTTTCCTAGACTCTGATTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATAAAGATGGCTTTTTTAGTCTCTTTCCTAGACTCTGATTCACA  150

seq1  GATATTGAGGAGGCATCTAAAGATGAGACCAGAACCATTTGGTTGGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGAGGAGGCATCTAAAGATGAGACCAGAACCATTTGGTTGGGAGC  200

seq1  AACTGTGTTCCCATAACTTATGTATTTATAGAGATGTTGTGGGGGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTTCCCATAACTTATGTATTTATAGAGATGTTGTGGGGGAGGGC  250

seq1  AGACACAGCTGAGCGACCTGACATCCTGGAAGTTTCCCGACCAAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGCTGAGCGACCTGACATCCTGGAAGTTTCCCGACCAAGGAAGG  300

seq1  GCCAGGAGCAGGAGCCCTGGGGCTTCAGCACCTAGCTAAGCCAGCCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGCAGGAGCCCTGGGGCTTCAGCACCTAGCTAAGCCAGCCTGTT  350

seq1  TCTTCATAAACTGACTCGGACCTTGATAAGCCACGAAACTGCTAACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAAACTGACTCGGACCTTGATAAGCCACGAAACTGCTAACAGAC  400

seq1  AAGATAAGCTGAAGGGGGTTTAATTCTTCATCATAGGGGAATTTGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGCTGAAGGGGGTTTAATTCTTCATCATAGGGGAATTTGTCTCT  450

seq1  TCCTATTCCCTTGGGCATTCTACCTTTTTGGGATCTTTACATTTGGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCCCTTGGGCATTCTACCTTTTTGGGATCTTTACATTTGGTCTC  500

seq1  TGTCTACGACACAAAGAACTTAATAAATAGGTAATTCCTCAATGGTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACGACACAAAGAACTTAATAAATAGGTAATTCCTCAATGGTTTCC  550

seq1  TCACATACACAGGTTTTGTTAGCATTTCCATATATCCATCCAGTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACACAGGTTTTGTTAGCATTTCCATATATCCATCCAGTTTCTTT  600

seq1  TCAATGTCTTTTATTTTGTGTATGTGTGCCGCGTGCCCGTGCGGGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCTTTTATTTTGTGTATGTGTGCCGCGTGCCCGTGCGGGTGTGT  650

seq1  GTGTGTGTGCGCGCATGTGTGTGTGAGTGGCCAGAAGCCTCAGAGCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCGCGCATGTGTGTGTGAGTGGCCAGAAGCCTCAGAGCCCCA  700

seq1  GGAACTGGAGTTGTAAGTGGTTGGGTACTGATGGCACAGTGCTGACTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGTTGTAAGTGGTTGGGTACTGATGGCACAGTGCTGACTCAA  750

seq1  CTCCTCTACCAGAGAGAGCAATGTGTGCTCTTAATCTCCGGCCATCTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTACCAGAGAGAGCAATGTGTGCTCTTAATCTCCGGCCATCTCCG  800

seq1  CCCTCTACCCAC-TTTCTTGAATCAGAAGCCAGAGTGTCATCC-TCGAAT  848
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  CCCTCTACCCACTTTTCTTGAATCAGAAGCCAGAGTGTCATCCTTCGAAT  850

seq1  C-AAAGCCA-CCTCCTTTCACCATCAGACCTCACTAAGCAATCAAATTTC  896
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCACCCTCCTTTCACCATCAGACCTCACTAAGCAATCAAATTTC  900

seq1  AAATTCTATTTGATTCTACCCACCTCTCTCTCTCTCCCCTTCCCTGGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATTTGATTCTACCCACCTCTCTCTCTCTCCCCTTCCCTGGATT  950

seq1  TTTATCAGCCTTTTTACTACTTGGACTATAGCTGCTTGTATTATGAATGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGCCTTTTTACTACTTGGACTATAGCTGCTTGTATTATGAATGC  1000

seq1  TAATTATGTTTCCCCCTCCCCCAAAACCTGCTTGCAAAAGAGTGTC-TGC  1045
      ||  ||||||||||||||||||||||||||||||||| ||  |||| |||
seq2  TA--TATGTTTCCCCCTCCCCCAAAACCTGCTTGCAAGAG-TTGTCTTGC  1047

seq1  TTGTAGCTTCTGGGAACCTGCCCCCAGTTGGC-TCTGATTAGTAAATAAA  1094
      ||||||| |||||||| ||||||||||||||| ||||||||||||   ||
seq2  TTGTAGCCTCTGGGAA-CTGCCCCCAGTTGGCTTCTGATTAGTAA--TAA  1094

seq1  GATGCCAACA-GCCAATAGCTG-AGGAGGGCAGACAGAGGCGGGGATTTT  1142
      |||||||||| ||||||||||| |||||||||||| ||| |||  |||||
seq2  GATGCCAACACGCCAATAGCTGAAGGAGGGCAGACCGAGCCGGCAATTTT  1144

seq1  AGG-ATTTCC  1151
      ||| ||||||
seq2  AGGAATTTCC  1154

seq1: chr6_29029037_29029965
seq2: B6Ng01-254A15.g_69_1003 (reverse)

seq1  GATG-TAAGTGCTCAGCTACTGCT-CCAGTGCCATGCCTGCCTATCTGCC  48
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATGTTAAGTGCTCAGCTACTGCTCCCAGTGCCATGCCTGCCTATCTGCC  50

seq1  GCCATGTTCCATGACGGCCATGGACTCTCCCTC-TGAAACTATAAGCAAA  97
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GCCATGTTCCATGACGGCCATGGACTCTCCCTCTTGAAACTTTAAGCAAA  100

seq1  CCCCACAACTAAATGCCTTTTTTTCATAAATTGTGCTTTGTCACAGCGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAACTAAATGCCTTTTTTTCATAAATTGTGCTTTGTCACAGCGAT  150

seq1  AAAACTGTGACTAAGAC-AAGGGCTTACCTTTGTT-ATCTACTTCAGAAA  195
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  AAAACTGTGACTAAGACAAAGGGCTTACCTTTGTTAATCTACTTCAGAAA  200

seq1  AGAACCACAGACTCGAGCTG-AGATGAACAAGATCAGCGCAGTGCTGGCA  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAACCACAGACTCGAGCTGAAGATGAACAAGATCAGCGCAGTGCTGGCA  250

seq1  TCTGTTAAGGCTCAGTTACAGATACATGGAGTATAAAAGGCTGTGCTTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAAGGCTCAGTTACAGATACATGGAGTATAAAAGGCTGTGCTTTC  300

seq1  GGGTAAAACTCTCAGATAAACATTTTCTGAGGTTTCTGGCTGCCTGAGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAACTCTCAGATAAACATTTTCTGAGGTTTCTGGCTGCCTGAGCA  350

seq1  TCCTGCATCCCAGAGAAGGATAGCGAGAACGGGGGAGGGTGAAGACAATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCCAGAGAAGGATAGCGAGAACGGGGGAGGGTGAAGACAATG  400

seq1  AGGATATGATGAGGATCTGAGCTGTATTTAACTTCACATTTGATTTCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGATGAGGATCTGAGCTGTATTTAACTTCACATTTGATTTCACT  450

seq1  GCCTGGCAGATGTCCCAGGGCCTTAAGGGGGGACAGCAGGCTGTCAGAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCAGATGTCCCAGGGCCTTAAGGGGGGACAGCAGGCTGTCAGAGT  500

seq1  GGGTGTGAAACAGTGAACCAAAACAGAGATTTAGCAAATCAAACAAGGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAAACAGTGAACCAAAACAGAGATTTAGCAAATCAAACAAGGAG  550

seq1  AGAGCAGGGAGAGCCAGCTGTGAGATGCTGCAGAGGGGAGGCCTGAAGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGGAGAGCCAGCTGTGAGATGCTGCAGAGGGGAGGCCTGAAGCT  600

seq1  CCCAGGGAAAAAGAGCAGCAGCCAGCCTGGCCTCAAGCTCTGCCTCAAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAAAAGAGCAGCAGCCAGCCTGGCCTCAAGCTCTGCCTCAAGC  650

seq1  GTACTGTGTGCTGGGTGCCAATGGAAGCCAACTCCCCCTGTGTGAAGTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGTGCTGGGTGCCAATGGAAGCCAACTCCCCCTGTGTGAAGTGA  700

seq1  CCACTTGGTGGCCATCCTATGATATTAAAACAGGAAGAGAAACCCACAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGTGGCCATCCTATGATATTAAAACAGGAAGAGAAACCCACAAA  750

seq1  CCATTTGTGGAGGGAAAGGATTCCTGTCTCCTGTCTCACTTAGATCACTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTGGAGGGAAAGGATTCCTGTCTCCTGTCTCACTTAGATCACTA  800

seq1  TGGAGTAAGACACTTTGCTCTTTTTAGACCTTACCCACTGTGATGTGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGACACTTTGCTCTTTTTAGACCTTACCCACTGTGATGTGGCT  850

seq1  GAAGCCTGGAATAGGCTCCTCCCCATCCCCCATCTTGTGAGCTTTAGCCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGGAATAGGCTCCTCCCCATCCCCCATCTTGTGAGCTTTAGCCC  900

seq1  TTTTCAGCCACCCTTCATCCGCCCCGATGGAATTC  929
      |||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCCACCCTTCATCCGCCCCGATGGAATTC  935