BAC Information

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BAC

Clone NameB6Ng01-254B10
Chromosome6 (Build37)
Map Location 55,174,291 - 55,329,652
singlet/doubletdoublet
Overlap geneC330043M08Rik, Aqp1, Ghrhr
Upstream geneChn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt
Downstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254B10.bB6Ng01-254B10.g
ACCGA060649GA060650
length1,0701,094
definitionB6Ng01-254B10.b B6Ng01-254B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,328,601 - 55,329,652)(55,174,291 - 55,175,367)
sequence
gaattcctccctttcccagaagatggtgggaaggttctgtgaggtatata
cacgttcttaaccacaaggacagaagagtcctcttgtcccatggcttggg
ttctggactggtgtagtctgtctctgttctccaggaaagctctgctgagt
ggaatgatggacctctacatcctaagggcaggaagtatgacacccacccc
cttcccataagagacaggaaggacagcaggtgaagtggacgatgaggtgt
tccccaccctcatcagtatggtaccacctccctttctccagtgtcatcat
taatcctgcactgggaggttggtgctatcagtcatcgttcaagatgacta
aatttttcagggtaacactagaagattgaaatccaggatagtccatcacc
gaaccagtaatgtgcaaaccagaaggaaccacatgctgtgcgtccctgcc
ttagctaggccactcacctgtgtctgagccgaagtgagagaagaattcag
ggcaggggagagagacccactggccagagcctgtcgggggccagcacagc
agcccatcccaggtcccagggcatcctaggtggagaaggaggagacatgg
ggtaacctatgagggaggagattctgaatggcagtgctgaaggagatgtc
aggaccagggacatccccaccccttcatacccagggaggtgttgttggtc
ccctctgccgcctgaagacatgcaagctcatcgtctctcagctgagtgat
gaagtcacattctaggtggaggtgacccagtgtctatgggaaattgtgac
agaatgagccaagcccactggaggccttgtgcgctctagttgtagtgacc
tgaagatgggagggagaccaagcctggtacattttctgtgccctagtttc
tgagaaaggcccattttgccccacagaatatcaaggaatgtttgataagc
aggtgggggcataaaggaaggagaagtggggcaatagaagggcagatggt
tcagaaaggagaggggaggaattgaaaaaagaaggaagggaaggacgagg
agaaataaagaagtggggaa
gaattccaggatggcccaggaccagctggaaagagcgttcaagcgtcagg
gcgtccagcctccatctctcaggtgagcatgaagagccaaggtgggattt
tccaaaccaagccccacttggcacacatggtccggcctcctgtggcattc
atggggttcttttggtttcttgtgctgttactgcaaagcccatgaggcag
gcaggaccagagggttatagtcaaccaggaagaaaatggagccggaggtc
acaccttccaaaggtcagggggaggccttctctgcccctccctttcttct
tcgagctgtagcaggctttagttgatgtctccaagcacaactggagtggc
acacctggctgatgtggatttgaggagttccctgcattcgtgagtcagcc
ccaaagacatcttgtgggcactccttttatttctttgatcctctttttac
ttccattttttcataatagaccactggggatttctgcagtgattggtttt
tgaccgttcatctagctgtccacctgggacgagcctcttggctatgagag
cactggatttaattcgttcacatctcattgaggactttagagcataggag
gaggttggctggtgggctttcctggtgccagcccctccctcgctggatgc
tggttcctttctcttctctttaagagcgagtgtgagactgatgctgttct
ccttcaatacatggtagagcttcggggaagggcttctgaggggctttaag
ctatatcttcaataaaaatgctcttacttagaagtttctattctttgtca
gtagggccaagttatctttttcaaggactttgacacttttctctgtcctt
agcttattggtataaagtacacagttaaaaatgcttttcttcactttcaa
gttttgtagggatcacagtgatgtgttctgctttattcctgaaaatctca
attagtaataactaaagatgtttagtaatttgacatctacctctcttgtg
cacggtggagtggtctggtgcaccatccaaaccctttagttcttatttat
ttaagtctttattatatttttctaggatgttcccttggcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55328601_55329652
seq2: B6Ng01-254B10.b_43_1112 (reverse)

seq1  TTCCC--CCTCTTT-CTTCTCCTC-TCCTT-CCTTCC-TCTTTTTTC-AT  43
      |||||  | |||||  |||||||| ||||| |||||| ||||||||| ||
seq2  TTCCCCACTTCTTTATTTCTCCTCGTCCTTCCCTTCCTTCTTTTTTCAAT  50

seq1  TCCTCCCCTCTCCTTTCTGAA-CATCTGCCC-TCTA-TGCCCCACTCCTC  90
      ||||||||||||||||||||| ||||||||| |||| ||||||||| |||
seq2  TCCTCCCCTCTCCTTTCTGAACCATCTGCCCTTCTATTGCCCCACTTCTC  100

seq1  CTTCC-TTATGCCCC--ACTGCTTATCAAACATTCCTTGATA-TCTGTGG  136
      ||||| |||||||||   |||||||||||||||||||||||| |||||||
seq2  CTTCCTTTATGCCCCCACCTGCTTATCAAACATTCCTTGATATTCTGTGG  150

seq1  GGC-AAATGGGCCTTTCTCAG-AACTAGGGCACAG-AAATGTACCAGGCT  183
      ||| ||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  GGCAAAATGGGCCTTTCTCAGAAACTAGGGCACAGAAAATGTACCAGGCT  200

seq1  TGGTCTCCCT-CCATCTTCAGGTCACTACAACTAGAGCGCACAAGGCCTC  232
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCCTCCCATCTTCAGGTCACTACAACTAGAGCGCACAAGGCCTC  250

seq1  CAGTGGGCTTGGCTCATTCTGTCACAATTTCCCATAGACACTGGGTCACC  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTTGGCTCATTCTGTCACAATTTCCCATAGACACTGGGTCACC  300

seq1  TCCACCTAGAATGTGACTTCATCACTCAGCTGAGAGACGATGAGCTTGCA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTAGAATGTGACTTCATCACTCAGCTGAGAGACGATGAGCTTGCA  350

seq1  TGTCTTCAGGCGGCAGAGGGGACCAACAACACCTCCCTGGGTATGAAGGG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGGCGGCAGAGGGGACCAACAACACCTCCCTGGGTATGAAGGG  400

seq1  GTGGGGATGTCCCTGGTCCTGACATCTCCTTCAGCACTGCCATTCAGAAT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGATGTCCCTGGTCCTGACATCTCCTTCAGCACTGCCATTCAGAAT  450

seq1  CTCCTCCCTCATAGGTTACCCCATGTCTCCTCCTTCTCCACCTAGGATGC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCATAGGTTACCCCATGTCTCCTCCTTCTCCACCTAGGATGC  500

seq1  CCTGGGACCTGGGATGGGCTGCTGTGCTGGCCCCCGACAGGCTCTGGCCA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACCTGGGATGGGCTGCTGTGCTGGCCCCCGACAGGCTCTGGCCA  550

seq1  GTGGGTCTCTCTCCCCTGCCCTGAATTCTTCTCTCACTTCGGCTCAGACA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTCTCTCCCCTGCCCTGAATTCTTCTCTCACTTCGGCTCAGACA  600

seq1  CAGGTGAGTGGCCTAGCTAAGGCAGGGACGCACAGCATGTGGTTCCTTCT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGTGGCCTAGCTAAGGCAGGGACGCACAGCATGTGGTTCCTTCT  650

seq1  GGTTTGCACATTACTGGTTCGGTGATGGACTATCCTGGATTTCAATCTTC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCACATTACTGGTTCGGTGATGGACTATCCTGGATTTCAATCTTC  700

seq1  TAGTGTTACCCTGAAAAATTTAGTCATCTTGAACGATGACTGATAGCACC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTACCCTGAAAAATTTAGTCATCTTGAACGATGACTGATAGCACC  750

seq1  AACCTCCCAGTGCAGGATTAATGATGACACTGGAGAAAGGGAGGTGGTAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCAGTGCAGGATTAATGATGACACTGGAGAAAGGGAGGTGGTAC  800

seq1  CATACTGATGAGGGTGGGGAACACCTCATCGTCCACTTCACCTGCTGTCC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGATGAGGGTGGGGAACACCTCATCGTCCACTTCACCTGCTGTCC  850

seq1  TTCCTGTCTCTTATGGGAAGGGGGTGGGTGTCATACTTCCTGCCCTTAGG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTCTTATGGGAAGGGGGTGGGTGTCATACTTCCTGCCCTTAGG  900

seq1  ATGTAGAGGTCCATCATTCCACTCAGCAGAGCTTTCCTGGAGAACAGAGA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGGTCCATCATTCCACTCAGCAGAGCTTTCCTGGAGAACAGAGA  950

seq1  CAGACTACACCAGTCCAGAACCCAAGCCATGGGACAAGAGGACTCTTCTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTACACCAGTCCAGAACCCAAGCCATGGGACAAGAGGACTCTTCTG  1000

seq1  TCCTTGTGGTTAAGAACGTGTATATACCTCACAGAACCTTCCCACCATCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGGTTAAGAACGTGTATATACCTCACAGAACCTTCCCACCATCT  1050

seq1  TCTGGGAAAGGGAGGAATTC  1052
      ||||||||||||||||||||
seq2  TCTGGGAAAGGGAGGAATTC  1070

seq1: chr6_55174291_55175367
seq2: B6Ng01-254B10.g_70_1163

seq1  GAATTCCAGGATGGCCCAGGACCAGCTGGAAAGAGCGTTCAAGCGTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATGGCCCAGGACCAGCTGGAAAGAGCGTTCAAGCGTCAGG  50

seq1  GCGTCCAGCCTCCATCTCTCAGGTGAGCATGAAGAGCCAAGGTGGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCAGCCTCCATCTCTCAGGTGAGCATGAAGAGCCAAGGTGGGATTT  100

seq1  TCCAAACCAAGCCCCACTTGGCACACATGGTCCGGCCTCCTGTGGCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCAAGCCCCACTTGGCACACATGGTCCGGCCTCCTGTGGCATTC  150

seq1  ATGGGGTTCTTTTGGTTTCTTGTGCTGTTACTGCAAAGCCCATGAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTCTTTTGGTTTCTTGTGCTGTTACTGCAAAGCCCATGAGGCAG  200

seq1  GCAGGACCAGAGGGTTATAGTCAACCAGGAAGAAAATGGAGCCGGAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCAGAGGGTTATAGTCAACCAGGAAGAAAATGGAGCCGGAGGTC  250

seq1  ACACCTTCCAAAGGTCAGGGGGAGGCCTTCTCTGCCCCTCCCTTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCCAAAGGTCAGGGGGAGGCCTTCTCTGCCCCTCCCTTTCTTCT  300

seq1  TCGAGCTGTAGCAGGCTTTAGTTGATGTCTCCAAGCACAACTGGAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTGTAGCAGGCTTTAGTTGATGTCTCCAAGCACAACTGGAGTGGC  350

seq1  ACACCTGGCTGATGTGGATTTGAGGAGTTCCCTGCATTCGTGAGTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCTGATGTGGATTTGAGGAGTTCCCTGCATTCGTGAGTCAGCC  400

seq1  CCAAAGACATCTTGTGGGCACTCCTTTTATTTCTTTGATCCTCTTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACATCTTGTGGGCACTCCTTTTATTTCTTTGATCCTCTTTTTAC  450

seq1  TTCCATTTTTTCATAATAGACCACTGGGGATTTCTGCAGTGATTGGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTTTCATAATAGACCACTGGGGATTTCTGCAGTGATTGGTTTT  500

seq1  TGACCGTTCATCTAGCTGTCCACCTGGGACGAGCCTCTTGGCTATGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTTCATCTAGCTGTCCACCTGGGACGAGCCTCTTGGCTATGAGAG  550

seq1  CACTGGATTTAATTCGTTCACATCTCATTGAGGACTTTAGAGCATAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATTTAATTCGTTCACATCTCATTGAGGACTTTAGAGCATAGGAG  600

seq1  GAGGTTGGCTGGTGGGCTTTCCTGGTGCCAGCCCCTCCCTCGCTGGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGCTGGTGGGCTTTCCTGGTGCCAGCCCCTCCCTCGCTGGATGC  650

seq1  TGGTTCCTTTCTCTTCTCTTTAAGAGCGAGTGTGAGACTGATGCTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTTTCTCTTCTCTTTAAGAGCGAGTGTGAGACTGATGCTGTTCT  700

seq1  CCTTCAATACATGGTAGAGCTTCGGGGAAGGGCTTCTGAGGGGCTTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATACATGGTAGAGCTTCGGGGAAGGGCTTCTGAGGGGCTTTAAG  750

seq1  CTATATCTTCAATAAAAATGCTCTTACTTAGAAGTTTCTATTCTTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTCAATAAAAATGCTCTTACTTAGAAGTTTCTATTCTTTGTCA  800

seq1  GTAGGGCCAAGTTATCTTTTTCAAGGACTTTGACACTTTTCTCTGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCCAAGTTATCTTTTTCAAGGACTTTGACACTTTTCTCTGTCCTT  850

seq1  AGCTTATTGGTATAAAGTACACAGTTAAAAATGC-TTTCTTCACTTTCAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCTTATTGGTATAAAGTACACAGTTAAAAATGCTTTTCTTCACTTTCAA  900

seq1  G-TTTGTAGGATCCACAGTGATGTG-TCTGCTTTATTCCTGAAAATCTCA  947
      | ||||||||   |||||||||||| ||||||||||||||||||||||||
seq2  GTTTTGTAGGGATCACAGTGATGTGTTCTGCTTTATTCCTGAAAATCTCA  950

seq1  ATTAGTAATAA-TTAAGATG-TTAGTAATTTGACAT-TACC-CTCTTGTG  993
      ||||||||||| | |||||| ||||||||||||||| |||| ||||||||
seq2  ATTAGTAATAACTAAAGATGTTTAGTAATTTGACATCTACCTCTCTTGTG  1000

seq1  CACG--TGAGT-GTCT-GTGCA-CATCCAAACCCTTTAG-TCTTATTTAT  1037
      ||||   |||| |||| ||||| |||||||||||||||| ||||||||||
seq2  CACGGTGGAGTGGTCTGGTGCACCATCCAAACCCTTTAGTTCTTATTTAT  1050

seq1  TT-AGTCTT--ATATA-TTTTCTAGGAATGTCCCTTGGCTTTTT  1077
      || ||||||   |||| ||||||||||   ||||||||| ||||
seq2  TTAAGTCTTTATTATATTTTTCTAGGATGTTCCCTTGGCCTTTT  1094