BAC Information

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BAC

Clone NameB6Ng01-254K22
Chromosome6 (Build37)1 (Build37)
Map Location 37,692,737 - 37,692,962189,709,038 - 189,709,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtn, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254K22.bB6Ng01-254K22.g
ACCGA061085GA061086
length2201,005
definitionB6Ng01-254K22.b B6Ng01-254K22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,692,737 - 37,692,962)(189,709,038 - 189,709,556)
sequence
taattctttctttctactttacaagtctcagggtttgagcttgggttatt
tggaatggtgtcagttgcctttatctgctgagccatttctctggccctgg
aaatagttcttaacaatctataagataacaggaaatttaaagaagaaata
gtacccttttgttaaaattattctctctctctctctctctctctctctct
ctctctctctctctctctct
gaattcatagtatctgatcttaagatttcttataaaagctactatgatcc
tgagagtggaaaatgtgaaatgaaacagaacaaagcaattccactacccc
ccaaaaaacaatcacaatggaacacaatccagaacctagaattgttctat
acttctgcagtcaactgaagttctacagaaatgctaagactagtgctttg
aacaaattatattagaagaaatggacatctgtatgttaaagaaaagaaaa
gaaaacaaaacaaaaccttgacacaccatacacacagtagagaaatccag
ggtaactctcacagagattgagaatcatctcacagctgctgcctttgatc
atcacagtcactcaactttcaactactcagaataacaatttgaagctaat
tattatatctacggaacatactatattctgattagaatacgtaaaagaaa
attgtatattgttaatttgaatctttatacaaatgaaaagggttaaaaac
agcaagaggctgtagcagttgctgctcttgtaggggacctgggttcattt
ctctgtacccacatcagacaccttctgtaatatatatccagggatccaaa
actctcttctggcctctgaaagcaatgcatgtgtcttagtcagggtttct
attcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtt
tattcagcttacacttccatactgctgttcatcaccaaggaagtcaggac
tggaactcaagcaggtcagaaagcaggagctgatgcagaggccatggagg
gatgtttcttttactggctttgcttccactggcttgcttagccctgctct
ctttatagaaaccaagactaccagcccagagattggtcccacccacaagg
gggcctttcccccttgatcactaatttgagaaaaatgtccccacagctgg
gatcttcatgggaggcatttccctcaactgaaagctccttttactggtga
ataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37692737_37692962
seq2: B6Ng01-254K22.b_49_274

seq1  GAATTCTAATTCTTTCTTTCTACTTTACAAGTCTCAGGGTTTGAGCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTCTTTCTTTCTACTTTACAAGTCTCAGGGTTTGAGCTTGG  50

seq1  GTTATTTGGAATGGTGTCAGTTGCCTTTATCTGCTGAGCCATTTCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGGAATGGTGTCAGTTGCCTTTATCTGCTGAGCCATTTCTCTGG  100

seq1  CCCTGGAAATAGTTCTTAACAATCTATAAGATAACAGGAAATTTAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAATAGTTCTTAACAATCTATAAGATAACAGGAAATTTAAAGAA  150

seq1  GAAATAGTACCCTTTTGTTAAAATTATTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTACCCTTTTGTTAAAATTATTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCT  226
      ||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCT  226

seq1: chr1_189709038_189709556
seq2: B6Ng01-254K22.g_319_835

seq1  AAAGAAAACAAAACAAAACCTTTTTTTTTTCTGAGATGCTGTAACTACCG  50
      |||||||||||||||||||||          ||| |  |  ||   ||  
seq2  AAAGAAAACAAAACAAAACCT----------TGACACACCATA--CACAC  38

seq1  AGCAAAGGCTGCACATTTTGGATCAATGACCCTCCCA-AGCAAAAGAG-G  98
      || | ||     | ||   || | |      ||| || ||  |  |||  
seq2  AGTAGAG-----AAATCCAGGGTAA------CTCTCACAGAGATTGAGAA  77

seq1  TC--CCCACAGGGGCTG---AAGA-GACCTCAGTAGCTCAGAGTGTTTGC  142
      ||  | |||||  ||||     ||  | | ||||  |||| | | |   |
seq2  TCATCTCACAGCTGCTGCCTTTGATCATCACAGTCACTCA-ACTTTCAAC  126

seq1  TACTCTTGAGGAGGACACAAGTTTGATTCCCGGCTCCACCTCTAACAGTG  192
      |||||      || | |  | |||||      |||  |  | | | |   
seq2  TACTC------AGAATAACAATTTGA-----AGCT--AATTATTATATCT  163

seq1  CTGGGGGATCCTGTGCTCTCTCCTGGGCTCTGCAGGTGCTACATGTACAT  242
        ||   || || |  |||       | |  | |   | || | | | ||
seq2  ACGGAACATACTATATTCT-------GATTAGAATACG-TAAAAGAAAAT  205

seq1  GGTGCATAGACAGCCAGGAAC---ACACACGTGCACTGGATTAGAAAC-G  288
       ||  || |  |    | | |   | |||  || |  || ||| |||| |
seq2  TGTATATTGTTAATTTGAATCTTTATACAAATGAAAAGGGTTAAAAACAG  255

seq1  TA-----CTGTAAAA-----------TGAAAAGGA-----GTTC------  311
       |     |||||  |           || |  |||     ||||      
seq2  CAAGAGGCTGTAGCAGTTGCTGCTCTTGTAGGGGACCTGGGTTCATTTCT  305

seq1  -----------TCATAAACC--AAGCAAT-GATAGCCAGGCATTAAAAAA  347
                 ||| | |||    | |||  ||| ||||| ||  |||| 
seq2  CTGTACCCACATCAGACACCTTCTGTAATATATATCCAGGGATCCAAAAC  355

seq1  TCCCTTTAACTGAGGCCTCAAGTTAACTATTATATGGCTGTCTTAGTCAG  397
      || |||   ||  ||||||     ||  | |  |||  ||||||||||||
seq2  TCTCTT---CT--GGCCTC--TGAAAGCAATGCATG--TGTCTTAGTCAG  396

seq1  GGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGA  446

seq1  AAGGGTTTATTTGGCTTACACTTCCACACTGCTGTTCATCACCAAAGGAA  497
      |||||||||||  ||||||||||||| |||||||||||||||| ||||||
seq2  AAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACC-AAGGAA  495

seq1  GTCAGGACTGGAACTCAAGCAG  519
      ||||||||||||||||||||||
seq2  GTCAGGACTGGAACTCAAGCAG  517