BAC Information

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BAC

Clone NameB6Ng01-254P23
Chromosome6 (Build37)
Map Location 15,743,486 - 15,903,171
singlet/doubletdoublet
Overlap geneMdfic
Upstream geneFoxp2, LOC100040568
Downstream geneLOC100041116, Tcfec, EG435881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254P23.bB6Ng01-254P23.g
ACCGA061315GA061316
length1,0011,121
definitionB6Ng01-254P23.b B6Ng01-254P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,743,486 - 15,744,498)(15,902,051 - 15,903,171)
sequence
gaattctctgctctctgcctgttcttgtattctacttcctgtatcgcata
tctttgttccaagaaattaagagtacctgtcgtactgcatctcatgagga
agaaatgaaaggaagaaagaaaaagacttgtctatcatagacttgagtgt
atcattcaaattgtctcttgatggcacttgatgaagtcttggctcgatca
aactgcctcgctgatgtcgatatttcctagtaagtttggcaacatactgg
tctgcgatactttcattataaactggctgttctcccggacaaaaccttca
gtttcattttcaacaaaacagagttcctgagatcagtcacagacaattcc
cccagtggctaaggggttatttctcctttgggttgttactttcagcatgg
gttggggctgcaagcccctcagatgggctgcagctcaggcttaccagtgt
cgaccttggcttgggactgtgacagcaataattcctaagagaatgttttt
ctttgatttgatgatgcttttaaagtcaaacgtcctgctaatgatttatt
ttgatgtgttcttctaagctctttcctgctgccctgttcctttgtttttc
ctaaagttacagtagctgttggtcttgagctgagtcctcctctcagtacc
ctgaattgcgcaattcttgcttggcccagtttaggctaggcatccttccc
agaacccagttggcttcttaaaggttaaacagttttggtaaaaactacaa
atcatgactaaataaaacccataaaaactgaaaacctcaaggacctaggg
aaaaggaatttttttctttgacagtgaaccacatacaggcagagagctca
tcttttttaaactttgtttctctactcttcttcccaaatttggtttgttt
attttagatttttgtttaaatttgttttgtttgttaatttgttttttttt
tcttctttctgctgtcttccctccttctcttctctctcttctcttctctt
c

gaattcattgagaagcaacatattggggctgggatttatgttttaagtca
tgttttacatatctgtttcatattgagtattcctttgtgcaatggtattt
taacctatttatgcttgccagctttaaagttggtttctttgtaggtgtcc
aaacaattgagcttaagtttgttaaaagaggaaacgtgtgctgtgtttct
ttaatacactaaatgctgatatcacttcccagaaatttatacttgtatgt
attgtttatttatttgttcatgagaattgcactctagataagaaattgtg
aatgaatcaacttatcatgaaagccttttaagaaaagtatttcaaaaggt
acaaaatgtaaatgcatgtaacacatgcatgtacattgctgcttctttgc
tcctatatacatgcgtcacacatgtatctacattttgagtcttttaaggt
gcttaccagttcacaaaggcttttatacttttatattctattttgctctt
tgctattattagaatctgacacatggggttcttaaatactgctttcgact
tctcagaacctttggcttttccagactcaagttaccgtattatataattt
attgaaagccaataattactaagacatgtggtaggcgcttatcatgagta
acgtcacactactggctctatgtacaagctagaatagggcaaatggtaca
attagaggcaagttccttggtgcataacaatagaagccttagtgacactg
taagattaagaaaaggctaaaacatctttaaaactactcattaccaccag
tcaagatgtgcatatttgacctttatggtaatcagaagcatcactgctta
tgcagtaagtggctaaataatcgtcacttttgacacagttttccttgagt
gaccgaaaggttaacatgcttgatcctgaagctgacacagacattgaatc
aactcatcagcggtcacagtgaaaggcactatcttcatcacctaggttac
agtgacagactagaatgttgtaggtttttcttctcagcaaagacagaagg
gaatgtaagtgcctgactgctctgtgcattctcaaaggttaacaaatact
gagaaacctttgctgggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15743486_15744498
seq2: B6Ng01-254P23.b_47_1047

seq1  GAATTCTCTGCTCTCTGCCTGTTCTTGTATTCTACTTCCTGTATCGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTCTCTGCCTGTTCTTGTATTCTACTTCCTGTATCGCATA  50

seq1  TCTTTGTTCCAAGAAATTAAGAGTACCTGTCGTACTGCATCTCATGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCCAAGAAATTAAGAGTACCTGTCGTACTGCATCTCATGAGGA  100

seq1  AGAAATGAAAGGAAGAAAGAAAAAGACTTGTCTATCATAGACTTGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAAGGAAGAAAGAAAAAGACTTGTCTATCATAGACTTGAGTGT  150

seq1  ATCATTCAAATTGTCTCTTGATGGCACTTGATGAAGTCTTGGCTCGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAAATTGTCTCTTGATGGCACTTGATGAAGTCTTGGCTCGATCA  200

seq1  AACTGCCTCGCTGATGTCGATATTTCCTAGTAAGTTTGGCAACATACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTCGCTGATGTCGATATTTCCTAGTAAGTTTGGCAACATACTGG  250

seq1  TCTGCGATACTTTCATTATAAACTGGCTGTTCTCCCGGACAAAACCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGATACTTTCATTATAAACTGGCTGTTCTCCCGGACAAAACCTTCA  300

seq1  GTTTCATTTTCAACAAAACAGAGTTCCTGAGATCAGTCACAGACAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTTCAACAAAACAGAGTTCCTGAGATCAGTCACAGACAATTCC  350

seq1  CCCAGTGGCTAAGGGGTTATTTCTCCTTTGGGTTGTTACTTTCAGCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGCTAAGGGGTTATTTCTCCTTTGGGTTGTTACTTTCAGCATGG  400

seq1  GTTGGGGCTGCAAGCCCCTCAGATGGGCTGCAGCTCAGGCTTACCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGCTGCAAGCCCCTCAGATGGGCTGCAGCTCAGGCTTACCAGTGT  450

seq1  CGACCTTGGCTTGGGACTGTGACAGCAATAATTCCTAAGAGAATGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTGGCTTGGGACTGTGACAGCAATAATTCCTAAGAGAATGTTTTT  500

seq1  CTTTGATTTGATGATGCTTTTAAAGTCAAACGTCCTGCTAATGATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTGATGATGCTTTTAAAGTCAAACGTCCTGCTAATGATTTATT  550

seq1  TTGATGTGTTCTTCTAAGCTCTTTCCTGCTGCCCTGTTCCTTTGTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTTCTTCTAAGCTCTTTCCTGCTGCCCTGTTCCTTTGTTTTTC  600

seq1  CTAAAGTTACAGTAGCTGTTGGTCTTGAGCTGAGTCCTCCTCTCAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTACAGTAGCTGTTGGTCTTGAGCTGAGTCCTCCTCTCAGTACC  650

seq1  CTGAATTGCGCAATTCTTGCTTGGCCCAGTTTAGGCTAGGCATCCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGCGCAATTCTTGCTTGGCCCAGTTTAGGCTAGGCATCCTTCCC  700

seq1  AGAACCCAGTTGGCTTCTTAAAGGTTAAACAGTTTTGGTAAAAACTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGTTGGCTTCTTAAAGGTTAAACAGTTTTGGTAAAAACTACAA  750

seq1  ATCATGACTAAATAAAACCCATAAAAACTGAAAACCTCAAGGACCTAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACTAAATAAAACCCATAAAAACTGAAAACCTCAAGGACCTAGGG  800

seq1  AAAAGGAATTTTTTTCTTTGACAGTGAACCACATACAGGCAGAGAGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATTTTTTTCTTTGACAGTGAACCACATACAGGCAGAGAGCTCA  850

seq1  TCTTTTTTAAACTTTGTTTCTCTACTCTTCTTCCCAAATTTGGTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAACTTTGTTTCTCTACTCTTCTTCCCAAATTTGGTTTGTTT  900

seq1  ATTTTAGATTTTTTGTTTAATTTTGTTTTGTTTTGTTTTATTTTGTTTTT  950
      |||||||| ||||||||||| |||||||||||   | ||| |||||||||
seq2  ATTTTAGA-TTTTTGTTTAAATTTGTTTTGTT---TGTTAATTTGTTTTT  946

seq1  TTTTTCTTTTCTTTTCTTGTCTTGTCTTTCCCTCCTTCTCTTCTCTTCTC  1000
      |||||||| |      || |  |||| |||||||||||||||||| ||||
seq2  TTTTTCTTCT------TTCTGCTGTC-TTCCCTCCTTCTCTTCTC-TCTC  988

seq1  TTCTCTTCTCTTC  1013
      |||||||||||||
seq2  TTCTCTTCTCTTC  1001


seq1: chr6_15902051_15903171
seq2: B6Ng01-254P23.g_69_1189 (reverse)

seq1  TGCACCCCAGGGAAAGGTTTCTCAGTAATTTTGTAACCTTTGAG-ATGCA  49
      |||||||   | |||||||||||||| ||||  ||||||||||| |||||
seq2  TGCACCC--AGCAAAGGTTTCTCAGT-ATTTGTTAACCTTTGAGAATGCA  47

seq1  CAGAGCAGTCA-GCACTTACAT--CCCTCTGTCTTTTGCTGAGAAG-AAA  95
      ||||||||||| ||||||||||  || |||||| |||||||||||| |||
seq2  CAGAGCAGTCAGGCACTTACATTCCCTTCTGTC-TTTGCTGAGAAGAAAA  96

seq1  ACCTACAACATTCTAGTCTGTCACTGTAACCTAGGTGATGAAGATAGTGG  145
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCTACAACATTCTAGTCTGTCACTGTAACCTAGGTGATGAAGATAGT-G  145

seq1  CCTTTCACTGTGACCGCTGATGAGTTGATTCAATGTCTGTGTCAGCTTCA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACTGTGACCGCTGATGAGTTGATTCAATGTCTGTGTCAGCTTCA  195

seq1  GGATCAAGCATGTTAACC-TTCGGTCACTTCAAGGAAAACTGTGTCAAAA  244
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GGATCAAGCATGTTAACCTTTCGGTCAC-TCAAGGAAAACTGTGTCAAAA  244

seq1  GTGACGATTATTTAGCCACCTACTGCATAAGCAGTGATGCTTCTGATTAC  294
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGACGATTATTTAGCCACTTACTGCATAAGCAGTGATGCTTCTGATTAC  294

seq1  CATAAAGGTCAAATATGCACATCTTGACTGGTGGTAATGAGTAGTTTTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGTCAAATATGCACATCTTGACTGGTGGTAATGAGTAGTTTTAA  344

seq1  AGATGTTTTAGCCTTTTCTTAATCTTACAGTGTCACTAAGGCTTCTATTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTAGCCTTTTCTTAATCTTACAGTGTCACTAAGGCTTCTATTG  394

seq1  TTATGCACCAAGGAACTTGCCTCTAATTGTACCATTTGCCCTATTCTAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACCAAGGAACTTGCCTCTAATTGTACCATTTGCCCTATTCTAGC  444

seq1  TTGTACATAGAGCCAGTAGTGTGACGTTACTCATGATAAGCGCCTACCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATAGAGCCAGTAGTGTGACGTTACTCATGATAAGCGCCTACCAC  494

seq1  ATGTCTTAGTAATTATTGGCTTTCAATAAATTATATAATACGGTAACTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGTAATTATTGGCTTTCAATAAATTATATAATACGGTAACTTG  544

seq1  AGTCTGGAAAAGCCAAAGGTTCTGAGAAGTCGAAAGCAGTATTTAAGAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGAAAAGCCAAAGGTTCTGAGAAGTCGAAAGCAGTATTTAAGAAC  594

seq1  CCCATGTGTCAGATTCTAATAATAGCAAAGAGCAAAATAGAATATAAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTCAGATTCTAATAATAGCAAAGAGCAAAATAGAATATAAAAG  644

seq1  TATAAAAGCCTTTGTGAACTGGTAAGCACCTTAAAAGACTCAAAATGTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGCCTTTGTGAACTGGTAAGCACCTTAAAAGACTCAAAATGTAG  694

seq1  ATACATGTGTGACGCATGTATATAGGAGCAAAGAAGCAGCAATGTACATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTGTGACGCATGTATATAGGAGCAAAGAAGCAGCAATGTACATG  744

seq1  CATGTGTTACATGCATTTACATTTTGTACCTTTTGAAATACTTTTCTTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTACATGCATTTACATTTTGTACCTTTTGAAATACTTTTCTTAA  794

seq1  AAGGCTTTCATGATAAGTTGATTCATTCACAATTTCTTATCTAGAGTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTCATGATAAGTTGATTCATTCACAATTTCTTATCTAGAGTGCA  844

seq1  ATTCTCATGAACAAATAAATAAACAATACATACAAGTATAAATTTCTGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATGAACAAATAAATAAACAATACATACAAGTATAAATTTCTGGG  894

seq1  AAGTGATATCAGCATTTAGTGTATTAAAGAAACACAGCACACGTTTCCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATATCAGCATTTAGTGTATTAAAGAAACACAGCACACGTTTCCTC  944

seq1  TTTTAACAAACTTAAGCTCAATTGTTTGGACACCTACAAAGAAACCAACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAAACTTAAGCTCAATTGTTTGGACACCTACAAAGAAACCAACT  994

seq1  TTAAAGCTGGCAAGCATAAATAGGTTAAAATACCATTGCACAAAGGAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTGGCAAGCATAAATAGGTTAAAATACCATTGCACAAAGGAATA  1044

seq1  CTCAATATGAAACAGATATGTAAAACATGACTTAAAACATAAATCCCAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATGAAACAGATATGTAAAACATGACTTAAAACATAAATCCCAGC  1094

seq1  CCCAATATGTTGCTTCTCAATGAATTC  1121
      |||||||||||||||||||||||||||
seq2  CCCAATATGTTGCTTCTCAATGAATTC  1121


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