BAC Information

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BAC

Clone NameB6Ng01-256E20
Chromosome6 (Build37)
Map Location 75,857,505 - 75,973,855
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256E20.bB6Ng01-256E20.g
ACCGA062296GA062297
length8041,117
definitionB6Ng01-256E20.b B6Ng01-256E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,857,505 - 75,858,308)(75,972,739 - 75,973,855)
sequence
gaattcaaattgtccctaaatcctcccaaacccaccctccaaacagagtg
tcttattttttggtttttatataacacagaggtagaagattcttagtcat
caggactctaatacatatatttttaagcatcttcatagtatatcactgta
gccaaagagaagtctatccttattaggctgtatttttctccaaaagtcta
actgagaattttattttgaaataattgacagatggtattctgtgcaacat
atatctggatagaagtactggaaatggaaacagacaaatctttgtcctta
tgcactgatactacacacatctggaatacttcataattttctttgagaaa
tgatagacttcttggaaatggattgcaatgctcatatattcttctgtttt
catttccttgctttgtagatccacaaatacctcattatagttgacatgac
atacttaaggctgacataaatatatttttggtggtgcataaaaggatttt
cccctttcttctacccatgagcctgtagaaaggaaaatataaagctatta
tgcaggtcaaatattctagggtcccttcttctaggaggtatttttgattt
cagatttttcccctgttatgctaactatgctaacaacccaaacaatgttt
caaacttgaaagagttcagattgtactaaagtcttccaaagtggattttg
actactttcttgaatattgcttttagaaggaaaacatttatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tata
gaattcagtgttgattttaaatacacacatacaaacacacacacacacac
acacacacacacacacacacagagagagagagagagagagagagagagag
agagagagagagagagagagaagcaataggtatatggagatagatagata
gatagatagatagatagatagatagatagatagatagatagtcatacccc
taaggttctctctctttgggaaattaattaacaaaataaactaagtttgg
gaaacgtgccttacgagaaacagagtctagttagattgattaattgtatt
tagtttgataagtagcaatagtagttctttctaataagtaacatttagct
aaaattctgtagcaaatatgttaaatttagaattaattctatgtactgtg
aatgaaattaactctaatatttcagatctgggctgtaatcaaagcttcta
attgtggtcttagcatcttgaatttgggttagtgtgtcttcagggtacta
ctcaccaagtttgcaaggatgaatacaagctcaccttatttgaactttct
agaccttgtttgaactgactaaatgtgcatggttttctttgtctctgtgc
tttaggaagtggattagaaactgaacattacattttaaatgtattaattt
caagcaatacatatactttctgctcacaagctaatggtcagagccaacct
ggcaggtgcatcttctctagaagtagttacccagaaatatctgatacatt
agagcgattgtgcctaccacagaccactacacccttggtttaaatcgaca
tgtgttttgaacataccatgggaagtcataatccctaaataatggttgag
agcttcactccttcaggaagacccaggcaaatacccaggctgttagtttc
tcaaatatctaatgcattgcattccatacaatctacaatgcttccctcca
gcattttaaattctgtttaattcactacctctatttccctctctaatgaa
ccgtatgatcatattgtaatctttctataaagggaacaaaacaactggat
aaagtttgtacaggttcctctgcattagtacaaggtagcttagtgtccat
tgaactcttgaaattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75857505_75858308
seq2: B6Ng01-256E20.b_47_850

seq1  GAATTCAAATTGTCCCTAAATCCTCCCAAACCCACCCTCCAAACAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGTCCCTAAATCCTCCCAAACCCACCCTCCAAACAGAGTG  50

seq1  TCTTATTTTTTGGTTTTTATATAACACAGAGGTAGAAGATTCTTAGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTTTGGTTTTTATATAACACAGAGGTAGAAGATTCTTAGTCAT  100

seq1  CAGGACTCTAATACATATATTTTTAAGCATCTTCATAGTATATCACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCTAATACATATATTTTTAAGCATCTTCATAGTATATCACTGTA  150

seq1  GCCAAAGAGAAGTCTATCCTTATTAGGCTGTATTTTTCTCCAAAAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAGAAGTCTATCCTTATTAGGCTGTATTTTTCTCCAAAAGTCTA  200

seq1  ACTGAGAATTTTATTTTGAAATAATTGACAGATGGTATTCTGTGCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATTTTATTTTGAAATAATTGACAGATGGTATTCTGTGCAACAT  250

seq1  ATATCTGGATAGAAGTACTGGAAATGGAAACAGACAAATCTTTGTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGATAGAAGTACTGGAAATGGAAACAGACAAATCTTTGTCCTTA  300

seq1  TGCACTGATACTACACACATCTGGAATACTTCATAATTTTCTTTGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGATACTACACACATCTGGAATACTTCATAATTTTCTTTGAGAAA  350

seq1  TGATAGACTTCTTGGAAATGGATTGCAATGCTCATATATTCTTCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACTTCTTGGAAATGGATTGCAATGCTCATATATTCTTCTGTTTT  400

seq1  CATTTCCTTGCTTTGTAGATCCACAAATACCTCATTATAGTTGACATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTTGCTTTGTAGATCCACAAATACCTCATTATAGTTGACATGAC  450

seq1  ATACTTAAGGCTGACATAAATATATTTTTGGTGGTGCATAAAAGGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAGGCTGACATAAATATATTTTTGGTGGTGCATAAAAGGATTTT  500

seq1  CCCCTTTCTTCTACCCATGAGCCTGTAGAAAGGAAAATATAAAGCTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTTCTACCCATGAGCCTGTAGAAAGGAAAATATAAAGCTATTA  550

seq1  TGCAGGTCAAATATTCTAGGGTCCCTTCTTCTAGGAGGTATTTTTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCAAATATTCTAGGGTCCCTTCTTCTAGGAGGTATTTTTGATTT  600

seq1  CAGATTTTTCCCCTGTTATGCTAACTATGCTAACAACCCAAACAATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTTCCCCTGTTATGCTAACTATGCTAACAACCCAAACAATGTTT  650

seq1  CAAACTTGAAAGAGTTCAGATTGTACTAAAGTCTTCCAAAGTGGATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGAAAGAGTTCAGATTGTACTAAAGTCTTCCAAAGTGGATTTTG  700

seq1  ACTACTTTCTTGAATATTGCTTTTAGAAGGAAAACATTTATATATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTCTTGAATATTGCTTTTAGAAGGAAAACATTTATATATATATA  750

seq1  TATATATATATATATATATATATATATATATATATATATATATATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  800

seq1  TATA  804
      ||||
seq2  TATA  804

seq1: chr6_75972739_75973855
seq2: B6Ng01-256E20.g_64_1180 (reverse)

seq1  CCAATTTCAAGAG-TCAGTG---ACAAAGC-ACCT--TAC-AAAGCAAAA  42
      ||||||||||||| ||| ||   || |||| ||||  ||| || ||| | 
seq2  CCAATTTCAAGAGTTCAATGGACACTAAGCTACCTTGTACTAATGCAGAG  50

seq1  GAA-CTGTACAAA-TTTAT-CAGT--CTTTGTTCC--TTATAGAAAGATA  85
      ||| ||||||||| ||||| ||||   ||||||||  |||||||||||| 
seq2  GAACCTGTACAAACTTTATCCAGTTGTTTTGTTCCCTTTATAGAAAGATT  100

seq1  CCAATATGATCATAGGGTTCATTAAGAGAGGGAAATAAGAGGTAGAGAAA  135
       ||||||||||||| |||||||| |||||||||||| |||||||| | ||
seq2  ACAATATGATCATACGGTTCATT-AGAGAGGGAAAT-AGAGGTAGTG-AA  147

seq1  TTAAACAGAATTTAAAAAAGGCTGGAGGGAAGCATTGTAGATTGTATGGG  185
      |||||||||||||  |||| ||||||||||||||||||||||||||| ||
seq2  TTAAACAGAATTT--AAAATGCTGGAGGGAAGCATTGTAGATTGTAT-GG  194

seq1  AATGCAATGCATGAAGACTATCTGAGAAACTAAAAAGCCTGGGTATTTGC  235
      ||||||||||||  ||| ||| ||||||||| || |||||||||||||| 
seq2  AATGCAATGCAT-TAGA-TATTTGAGAAACT-AACAGCCTGGGTATTTG-  240

seq1  CCTGGGTCCTCCTGAAGGAGTGAAGCTCTAAACCATTATCTAGGGATTTA  285
      |||||||| |||||||||||||||||||| ||||||||| |||||| |||
seq2  CCTGGGTCTTCCTGAAGGAGTGAAGCTCTCAACCATTATTTAGGGA-TTA  289

seq1  TGACTTCCTGTGGTATGTTCAAAACACATGTTGATTTAAACCAAGGGTGT  335
      ||||||||  ||||||||||||||||||||| ||||||||||||||||||
seq2  TGACTTCCCATGGTATGTTCAAAACACATGTCGATTTAAACCAAGGGTGT  339

seq1  AGTGGTTTGTGGTAGGAACAATGGCTCTAATGTATCAAATATTTCTTGGT  385
      |||||| ||||||||| ||||| |||||||||||||| |||||||| |||
seq2  AGTGGTCTGTGGTAGGCACAATCGCTCTAATGTATCAGATATTTCTGGGT  389

seq1  AACTACTTCTAGAGAAGATGCACCTGCCAGGTTGGCTCTGACCATTAGCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTCTAGAGAAGATGCACCTGCCAGGTTGGCTCTGACCATTAGCT  439

seq1  TGTGAGCAGAAAGTATATGTATTGCTTGAAATTAATACATTTAAAATCTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGAGCAGAAAGTATATGTATTGCTTGAAATTAATACATTTAAAATGTA  489

seq1  ATGTTCAGTTTCTAATCCACTTCCTAAAGCACAGAGACAAAGAAAACCAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGTTTCTAATCCACTTCCTAAAGCACAGAGACAAAGAAAACCAT  539

seq1  GCACATTTAGGCAGTTCAAACAAGGTCTAGAAAGTTCAAATAAGGTGAGA  585
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GCACATTTAGTCAGTTCAAACAAGGTCTAGAAAGTTCAAATAAGGTGAGC  589

seq1  TTGTATTCATCCTTGAAAACTTGGTGAGTAGTACCCTGAAGACACACTAA  635
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGTATTCATCCTTGCAAACTTGGTGAGTAGTACCCTGAAGACACACTAA  639

seq1  CCCAAATTCAAGATGCTAAGACCACAATTAGAAGCTTTGATTATAGCACA  685
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  CCCAAATTCAAGATGCTAAGACCACAATTAGAAGCTTTGATTACAGCCCA  689

seq1  GATCTGAAATATTAGAGTTAATTTCATTCACAGTACATAGAATTAATTCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAAATATTAGAGTTAATTTCATTCACAGTACATAGAATTAATTCT  739

seq1  AAATTTAACATATTTGCTACAGAATTTTAGCTAAATGTTACTTATTAGAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACATATTTGCTACAGAATTTTAGCTAAATGTTACTTATTAGAA  789

seq1  AGAACTACTATTGCTACTTATAAAACTAAATACAATTAATCAATCTAACT  835
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAACTACTATTGCTACTTATCAAACTAAATACAATTAATCAATCTAACT  839

seq1  AGACTCTGTTTCTCCTAAGGCATGTTTCCCAAACTTAGTTTATTTTGTTA  885
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AGACTCTGTTTCTCGTAAGGCACGTTTCCCAAACTTAGTTTATTTTGTTA  889

seq1  ATTAATTTCCCAAAGAGAGAGAACCTTAGGGGTATGACTATCTATCTATC  935
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  ATTAATTTCCCAAAGAGAGAGAACCTTAGGGGTATGA----CTATCTATC  935

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCCATA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCCATA  985

seq1  TACCTATTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1035

seq1  CTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT  1085

seq1  GTATGTGTGTATTTAAAATCAACACTGAATTC  1117
      ||||||||||||||||||||||||||||||||
seq2  GTATGTGTGTATTTAAAATCAACACTGAATTC  1117