BAC Information

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BAC

Clone NameB6Ng01-256J14
Chromosome6 (Build37)6 (Build37)
Map Location 32,723,801 - 32,723,851112,983,754 - 112,984,805
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620104, 1700012A03Rik, Plxna4
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256J14.bB6Ng01-256J14.g
ACCGA062517GA062518
length5421,060
definitionB6Ng01-256J14.b B6Ng01-256J14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,723,801 - 32,723,851)(112,983,754 - 112,984,805)
sequence
tcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaac
atccttaatcatcatggaaatgcaaatcaaaacaacactgagattccact
tcactccagtcagaatggctaagatcaaaaactcaggtgacagcagatgt
tggcgaggatgtggagaaaggggaacactcctccattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctggcggttcctcagaaaac
tgttcattattttttgtcgagctcactgattgcacttgcctggctggcca
gggaaccatagaaatcctcctgtctctaccatgctgcctgtatactgctg
agactggtggggcctttgttgttgttgttgtttacctgtgtttgtttttt
tttaaacatggatattgaacccaggtcctcttacctacatggcaagcact
ttaccaactgagccatctctccagtccccttctttttaaaattactacta
ctgctgctgctgctgctgctggtggtggtggtggtggtggtg
gaattcactatgtagacctgactggcctcaaactcatagagatccacctg
cctctgcctcctggacttaaagttctggcgctaaataaaggtgtgctacc
atgcctggcttctctctggtcttctgttattaccaagttctgagccagtc
tagggagaatggaggcagcaggtatagtttagggtcctttggccccagta
agttggaaccaatagtctgaatgactcaaaatatcccttccctgaaacta
ggtcagtttatttataaagaagtctgacccccaagatgatcaggtgtttg
ggggaagaagccaaaagcaatctttcaggaaggtgatagggaaggtcaga
gacttgtcctttattctaccttgacttcaaaaacacagttcttaggtgac
aggagaatatatgcggtactctgtttaacattagcagggctaattctgct
gtgttgagaactgtaataatactgctcagtactgggatgggctacctgca
gtcactggccggcagagtcactatagtgtgcatctgaagatgaaagacta
gtaggaaagataagcaaggccttcctatctcagtgcctatccaaggaaat
agagatatctgcaatttgttccagctatcaggtcaatccggcttcttcca
tctagcctgagaagtcatgcttctaaaacgtctgtgattactttgacaaa
cagcctaggagaggagataaagtctgatttcagccaacccagcttgcatt
tcagtttcttaacagaaactgcctgagaaaggactgctgcacggcacatc
agcacatttccactctttcatctagaaaaaggagagaagattggctaatt
aatcctactcgacggttcacatttctattgccaagaggagcagttactca
ccaacagacactagaaaacatccacacgcagacagacgatgtacagtcag
gtccttgtcacggcattacggagcttgtcattacaactcacaggagctct
gggtttgagtaattcccaagccctcagaacaggtcttcaactcagagcag
aggcgattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32723801_32723851
seq2: B6Ng01-256J14.b_548_592 (reverse)

seq1  CACCACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTA  50
      |||||||||||||||||||| ||||||||||||||||||||| ||     
seq2  CACCACCACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGTAG-----  45

seq1  G  51
       
seq2  -  45

seq1: chr6_112983754_112984805
seq2: B6Ng01-256J14.g_65_1124

seq1  GAATTCACTATGTAGACCTGACTGGCCTCAAACTCATAGAGATCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCTGACTGGCCTCAAACTCATAGAGATCCACCTG  50

seq1  CCTCTGCCTCCTGGACTTAAAGTTCTGGCGCTAAATAAAGGTGTGCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCTGGACTTAAAGTTCTGGCGCTAAATAAAGGTGTGCTACC  100

seq1  ATGCCTGGCTTCTCTCTGGTCTTCTGTTATTACCAAGTTCTGAGCCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGCTTCTCTCTGGTCTTCTGTTATTACCAAGTTCTGAGCCAGTC  150

seq1  TAGGGAGAATGGAGGCAGCAGGTATAGTTTAGGGTCCTTTGGCCCCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAATGGAGGCAGCAGGTATAGTTTAGGGTCCTTTGGCCCCAGTA  200

seq1  AGTTGGAACCAATAGTCTGAATGACTCAAAATATCCCTTCCCTGAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAACCAATAGTCTGAATGACTCAAAATATCCCTTCCCTGAAACTA  250

seq1  GGTCAGTTTATTTATAAAGAAGTCTGACCCCCAAGATGATCAGGTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTTATTTATAAAGAAGTCTGACCCCCAAGATGATCAGGTGTTTG  300

seq1  GGGGAAGAAGCCAAAAGCAATCTTTCAGGAAGGTGATAGGGAAGGTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAAGCCAAAAGCAATCTTTCAGGAAGGTGATAGGGAAGGTCAGA  350

seq1  GACTTGTCCTTTATTCTACCTTGACTTCAAAAACACAGTTCTTAGGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCCTTTATTCTACCTTGACTTCAAAAACACAGTTCTTAGGTGAC  400

seq1  AGGAGAATATATGCGGTACTCTGTTTAACATTAGCAGGGCTAATTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATATATGCGGTACTCTGTTTAACATTAGCAGGGCTAATTCTGCT  450

seq1  GTGTTGAGAACTGTAATAATACTGCTCAGTACTGGGATGGGCTACCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGAACTGTAATAATACTGCTCAGTACTGGGATGGGCTACCTGCA  500

seq1  GTCACTGGCCGGCAGAGTCACTATAGTGTGCATCTGAAGATGAAAGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGCCGGCAGAGTCACTATAGTGTGCATCTGAAGATGAAAGACTA  550

seq1  GTAGGAAAGATAAGCAAGGCCTTCCTATCTCAGTGCCTATCCAAGGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAGATAAGCAAGGCCTTCCTATCTCAGTGCCTATCCAAGGAAAT  600

seq1  AGAGATATCTGCAATTTGTTCCAGCTATCAGGTCAATCCGGCTTCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATCTGCAATTTGTTCCAGCTATCAGGTCAATCCGGCTTCTTCCA  650

seq1  TCTAGCCTGAGAAGTCATGCTTCTAAAACGTCTGTGATTACTTTGACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGAGAAGTCATGCTTCTAAAACGTCTGTGATTACTTTGACAAA  700

seq1  CAGCCTAGGAGAGGAGATAAAGTCTGATTTCAGCCAACCCAGCTTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGAGAGGAGATAAAGTCTGATTTCAGCCAACCCAGCTTGCATT  750

seq1  TCAGTTTCTTAACAGAAACTGCCTGAGAAAGGACTGCTGCACGGCACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCTTAACAGAAACTGCCTGAGAAAGGACTGCTGCACGGCACATC  800

seq1  AGCACATTTCCACTCTTTCATCTAGAAAAAGGAGAGAAGATTGGCTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTCCACTCTTTCATCTAGAAAAAGGAGAGAAGATTGGCTAATT  850

seq1  AATCCTACTCGACGGTTCACATTTCTATTGCCAAGAGGAGCAGTTACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTCGACGGTTCACATTTCTATTGCCAAGAGGAGCAGTTACTCA  900

seq1  CCAACAGACACTAG-AAACACCCACACGCAGACAGAC-ATGTACAGTCAG  948
      |||||||||||||| ||||| |||||||||||||||| ||||||||||||
seq2  CCAACAGACACTAGAAAACATCCACACGCAGACAGACGATGTACAGTCAG  950

seq1  GTCCTTGTCA-GGCATT-CCGAGCTTGCCATT-CCACTCACAGGAAGCTC  995
      |||||||||| |||||| | ||||||| |||| | ||||||||| |||||
seq2  GTCCTTGTCACGGCATTACGGAGCTTGTCATTACAACTCACAGG-AGCTC  999

seq1  TGG--TTGAAGTATTCCCAAG-CCTCAGAACAGG-CCTCCACTCAAGAGC  1041
      |||  ||||   ||||||||| |||||||||||| | || |||| |||||
seq2  TGGGTTTGAGTAATTCCCAAGCCCTCAGAACAGGTCTTCAACTC-AGAGC  1048

seq1  AGAGGCG-TTGT  1052
      ||||||| ||||
seq2  AGAGGCGATTGT  1060