BAC Information

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BAC

Clone NameB6Ng01-256J22
Chromosome6 (Build37)
Map Location 8,205,604 - 8,298,503
singlet/doubletdoublet
Overlap geneRpa3, LOC100036521
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002
Downstream geneLOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256J22.bB6Ng01-256J22.g
ACCGA062530GA062531
length1,1091,144
definitionB6Ng01-256J22.b B6Ng01-256J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,297,378 - 8,298,503)(8,205,604 - 8,206,750)
sequence
gaattccaggtcttcctttagctagaaacccccttttactgccctgtctt
ttaagagtaaagctaacctgttatctgtctgggttgctcttccggtaagt
tacacagattctacatttttactgctggttagtgatctgtctccttgaga
catggaaagccatgtaaagatggaggcagggacttttttttatccttttc
ctttttgtctggctcactatacctatatccctatgccttgatctaattct
taccatagaactggagttcaatacatatttattaaacacatgtattttac
aaattaatgtttagaacaaaaatgtgagtttcttaaggtcacatgaactt
ataatcctcactataggcctaaggtagcacctgacatagaaatggagctc
cagaaaggtttaaaggtgcaactgaaataagggcatgttagtattaaagc
aatattaaaaagcagtttcagggctttagtattgttacaaaaattattgt
acttattaaaatcattttcataagtactttaataagaaaatatcagaaac
ataaatttaacctaaattggaactttttctaaattagcaatagtgtggtt
taactaaatatcattagtattcaggatcggaacattatactaggaactaa
agaacattttgagagaaagatcccgaggccagatgaagactatggctagt
gcaggaaaacagctacataaagaacaaagtggtcagaggcagaatatgaa
caacagggaacagaattcagggttttagtcaattaaagtatatttgaaaa
aagatgtgtttttggaactgggaaaggaatactgggaatatgacttcata
ttttacaggcaaaaagctaatacatcagatttattcattcttaaaagtga
cactgagaactggagcaagtaagtgtcttcagtagcagtgatgggagggc
agtgtcaggctgagacaggcagagggacatacggagagatggaagtgatt
tcacaggagcagcagacagcttcagaaatagagaaatctagacactacat
caaatcatgctaagaaaaagggcagttctctgcacagaacattgaatggt
tcctgaatg

gaattccatactaagaataatggcaagcttaaaggcacgaagaaaaagtc
aaagattctgccaaccctacgatcacctgtttggcagtggtctatacaca
ttttagaatccaaaatgaagaaattgacaaattggatacacgcctgttct
tttcattcaccaaaagcattttctaaataagctactaaggaataatcagc
atggtagatggtaagaaaatctatagcatggctagctggcccaggcttct
atttggtagatataagaccaaaccttatagttacaaaactccaagcttga
gactgaaaaataaaaacaattgaccaacagcatcatattttgatttttat
tattcagactatatattgaagtatcacttttaaaaaaagtttataaaaag
gcttagttgtaaactgtcataatagatttacaaaaaaatatatatatata
aaagaacaaattaaatattagaaattataggagtcgctccattaaactgc
aggagtcttccttaatagccttcagtgtagcttcctggcaatcttaagaa
actgaagaagctcattcatgttgtggaagccctacagggaaaaactgagg
aagctcattgataattttcacagcttcattgtaaagttcaagatctgaaa
gaaacatttaagcaaacacttaatctacagtggactctgcagtatcaact
gttacctgaagtatttctatgtctttccttgtgagaagtcgacttacttt
cacaacccatgtttatttaactgtggtactagcaaagactggagagatgg
taaaccattaaagtcgttttatgctggggtcatactttcagtgttactat
actgttctagtgtccaactcatatattaaaatattaattttatcatattt
taagtcctttttattctataactagcggtatttattgttttctttacaca
caaggaatgactaatttacaaggtctattctcattttatagaaattgaaa
tataccaaaactgagattttagatcaaaaccttaaataaaaagtttttcc
tcctattcatgagactgctgacagtacggtgctttacctcaacgaagcga
tagtatcttccttacagtataagatgcacagagcaccggtcgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8297378_8298503
seq2: B6Ng01-256J22.b_45_1153 (reverse)

seq1  CATTCAGGAACCATTCAAATGTCTGTGCCAGAGGACCTGCCCTTTTTCTT  50
      ||||||||||||||||||   |||||| |||| || ||||||||||||||
seq2  CATTCAGGAACCATTCAATGTTCTGTG-CAGA-GAACTGCCCTTTTTCTT  48

seq1  AGCAATGGTTTTGATGTAGGTGTCTAGATTTTCTCTTTATTTCTGAAGCT  100
      ||||   | ||||||||| |||||||||||   ||| |||||||||||||
seq2  AGCA--TGATTTGATGTA-GTGTCTAGATT---TCTCTATTTCTGAAGCT  92

seq1  GTCTTGCTGCTTCCTGTGAAATCACTTCCATCCTTCTCCGTTATGTCCCC  150
      ||| |||||| |||||||||||||||||||||  |||||| ||||| |||
seq2  GTC-TGCTGC-TCCTGTGAAATCACTTCCATC--TCTCCG-TATGT-CCC  136

seq1  TCTGCCCTGTCTCAGCCCTGACACTTGCCCT-CCATCACTGCCTACTGAA  199
      |||| |||||||||| |||||||| |||||| ||||||||| ||||||||
seq2  TCTG-CCTGTCTCAG-CCTGACAC-TGCCCTCCCATCACTG-CTACTGAA  182

seq1  GACACTTACTTGCTCCAGTTCTCAGTGTCACTTTTAAGAATGAATAAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTACTTGCTCCAGTTCTCAGTGTCACTTTTAAGAATGAATAAATC  232

seq1  TGATGTATTAGCTTTTTGCCTGTAAAATATGAAGTCATATTCCCAGTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTAGCTTTTTGCCTGTAAAATATGAAGTCATATTCCCAGTATT  282

seq1  CCTTTCCCAGTTCCAAAAACACATCTTTTTTCAAATATACTTTAATTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCAGTTCCAAAAACACATCTTTTTTCAAATATACTTTAATTGAC  332

seq1  TAAAACCCTGAATTCTGTTCCCTGTTGTTCATATTCTGCCTCTGACCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCTGAATTCTGTTCCCTGTTGTTCATATTCTGCCTCTGACCACT  382

seq1  TTGTTCTTTATGTAGCTGTTTTCCTGCACTAGCCATAGTCTTCATCTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTATGTAGCTGTTTTCCTGCACTAGCCATAGTCTTCATCTGGC  432

seq1  CTCGGGATCTTTCTCTCAAAATGTTCTTTAGTTCCTAGTATAATGTTCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATCTTTCTCTCAAAATGTTCTTTAGTTCCTAGTATAATGTTCCG  482

seq1  ATCCTGAATACTAATGATATTTAGTTAAACCACACTATTGCTAATTTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATACTAATGATATTTAGTTAAACCACACTATTGCTAATTTAGA  532

seq1  AAAAGTTCCAATTTAGGTTAAATTTATGTTTCTGATATTTTCTTATTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCAATTTAGGTTAAATTTATGTTTCTGATATTTTCTTATTAAA  582

seq1  GTACTTATGAAAATGATTTTAATAAGTACAATAATTTTTGTAACAATACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATGAAAATGATTTTAATAAGTACAATAATTTTTGTAACAATACT  632

seq1  AAAGCCCTGAAACTGCTTTTTAATATTGCTTTAATACTAACATGCCCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGAAACTGCTTTTTAATATTGCTTTAATACTAACATGCCCTTA  682

seq1  TTTCAGTTGCACCTTTAAACCTTTCTGGAGCTCCATTTCTATGTCAGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTGCACCTTTAAACCTTTCTGGAGCTCCATTTCTATGTCAGGTG  732

seq1  CTACCTTAGGCCTATAGTGAGGATTATAAGTTCATGTGACCTTAAGAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTAGGCCTATAGTGAGGATTATAAGTTCATGTGACCTTAAGAAAC  782

seq1  TCACATTTTTGTTCTAAACATTAATTTGTAAAATACATGTGTTTAATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTTGTTCTAAACATTAATTTGTAAAATACATGTGTTTAATAAA  832

seq1  TATGTATTGAACTCCAGTTCTATGGTAAGAATTAGATCAAGGCATAGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTGAACTCCAGTTCTATGGTAAGAATTAGATCAAGGCATAGGGA  882

seq1  TATAGGTATAGTGAGCCAGACAAAAAGGAAAAGGATAAAAAAAAGTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTATAGTGAGCCAGACAAAAAGGAAAAGGATAAAAAAAAGTCCCT  932

seq1  GCCTCCATCTTTACATGGCTTTCCATGTCTCAAGGAGACAGATCACTAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATCTTTACATGGCTTTCCATGTCTCAAGGAGACAGATCACTAAC  982

seq1  CAGCAGTAAAAATGTAGAATCTGTGTAACTTACCGGAAGAGCAACCCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTAAAAATGTAGAATCTGTGTAACTTACCGGAAGAGCAACCCAGA  1032

seq1  CAGATAACAGGTTAGCTTTACTCTTAAAAGACAGGGCAGTAAAAGGGGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACAGGTTAGCTTTACTCTTAAAAGACAGGGCAGTAAAAGGGGGT  1082

seq1  TTCTAGCTAAAGGAAGACCTGGAATTC  1126
      |||||||||||||||||||||||||||
seq2  TTCTAGCTAAAGGAAGACCTGGAATTC  1109


seq1: chr6_8205604_8206750
seq2: B6Ng01-256J22.g_62_1205

seq1  GAATTCCATACTAAGAATAATGGCAAGCTTAAAGGCACGAAGAAAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTAAGAATAATGGCAAGCTTAAAGGCACGAAGAAAAAGTC  50

seq1  AAAGATTCTGCCAACCCTACGATCACCTGTTTGGCAGTGGTCTATACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTGCCAACCCTACGATCACCTGTTTGGCAGTGGTCTATACACA  100

seq1  TTTTAGAATCCAAAATGAAGAAATTGACAAATTGGATACACGCCTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATCCAAAATGAAGAAATTGACAAATTGGATACACGCCTGTTCT  150

seq1  TTTCATTCACCAAAAGCATTTTCTAAATAAGCTACTAAGGAATAATCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCACCAAAAGCATTTTCTAAATAAGCTACTAAGGAATAATCAGC  200

seq1  ATGGTAGATGGTAAGAAAATCTATAGCATGGCTAGCTGGCCCAGGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATGGTAAGAAAATCTATAGCATGGCTAGCTGGCCCAGGCTTCT  250

seq1  ATTTGGTAGATATAAGACCAAACCTTATAGTTACAAAACTCCAAGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAGATATAAGACCAAACCTTATAGTTACAAAACTCCAAGCTTGA  300

seq1  GACTGAAAAATAAAAACAATTGACCAACAGCATCATATTTTGATTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAAATAAAAACAATTGACCAACAGCATCATATTTTGATTTTTAT  350

seq1  TATTCAGACTATATATTGAAGTATCACTTTTAAAAAAAGTTTATAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGACTATATATTGAAGTATCACTTTTAAAAAAAGTTTATAAAAAG  400

seq1  GCTTAGTTGTAAACTGTCATAATAGATTTACAAAAAAATATATATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTGTAAACTGTCATAATAGATTTACAAAAAAATATATATATATA  450

seq1  AAAGAACAAATTAAATATTAGAAATTATAGGAGTCGCTCCATTAAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAATTAAATATTAGAAATTATAGGAGTCGCTCCATTAAACTGC  500

seq1  AGGAGTCTTCCTTAATAGCCTTCAGTGTAGCTTCCTGGCAATCTTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTTCCTTAATAGCCTTCAGTGTAGCTTCCTGGCAATCTTAAGAA  550

seq1  ACTGAAGAAGCTCATTCATGTTGTGGAAGCCCTACAGGGAAAAACTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAGCTCATTCATGTTGTGGAAGCCCTACAGGGAAAAACTGAGG  600

seq1  AAGCTCATTGATAATTTTCACAGCTTCATTGTAAAGTTCAAGATCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATTGATAATTTTCACAGCTTCATTGTAAAGTTCAAGATCTGAAA  650

seq1  GAAACATTTAAGCAAACACTTAATCTACAGTGGACTCTGCAGTATCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTAAGCAAACACTTAATCTACAGTGGACTCTGCAGTATCAACT  700

seq1  GTTACCTGAAGTATTTCTATGTCTTTCCTTGTGAGAAGTCGACTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGAAGTATTTCTATGTCTTTCCTTGTGAGAAGTCGACTTACTTT  750

seq1  CACAACCCATGTTTATTTAACTGTGGTACTAGCAAAGACTGGAGAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCATGTTTATTTAACTGTGGTACTAGCAAAGACTGGAGAGATGG  800

seq1  TAAACCATTAAAGTCGTTTTATGCTGGGGTCATACTTTCAGTGTTACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATTAAAGTCGTTTTATGCTGGGGTCATACTTTCAGTGTTACTAT  850

seq1  ACTGTTCTAGTGTCCAACTCATATATTAAAATATTAATTTTATCATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTAGTGTCCAACTCATATATTAAAATATTAATTTTATCATATTT  900

seq1  TAAGTCCTTTTTATTCTATAACTAGCGGTATTTATTGTTTTCTTTACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCTTTTTATTCTATAACTAGCGGTATTTATTGTTTTCTTTACACA  950

seq1  CAAGGAATGACTAATTTACAAGGTCTATTCTCATTTTATAGAAATTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGGAATGACTAATTTACAAGGTCTATTCTCATTTTATAGAAATTG-AA  999

seq1  ATATACCAAAACTGAGATTTTAGATCAAAAACCTTAAAT-AAAAGTTTT-  1048
      |||||||||||||||||||||||||| |||||||||||| ||||||||| 
seq2  ATATACCAAAACTGAGATTTTAGATC-AAAACCTTAAATAAAAAGTTTTT  1048

seq1  -CTCCTATTCATGAGACTGCTGAACAGTACGGTGCTTTA-CTCACCAAAG  1096
       ||||||||||||||||||||| |||||||||||||||| |||| | |||
seq2  CCTCCTATTCATGAGACTGCTG-ACAGTACGGTGCTTTACCTCAACGAAG  1097

seq1  CGATTAGTATCTTCCTTAAACAGGGTATAAGATGCACAGAGCA-CGGTCG  1145
      ||| |||||||||||||| |    ||||||||||||||||||| ||||||
seq2  CGA-TAGTATCTTCCTTACA----GTATAAGATGCACAGAGCACCGGTCG  1142

seq1  CC  1147
      ||
seq2  CC  1144


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