BAC Information

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BAC

Clone NameB6Ng01-257D04
Chromosome6 (Build37)
Map Location 5,707,581 - 5,812,743
singlet/doubletdoublet
Overlap geneDync1i1
Upstream genePeg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
Downstream geneSlc25a13, EG667462, EG667468, LOC667471, LOC100040096, Shfm1, LOC545826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257D04.bB6Ng01-257D04.g
ACCGA062958GA062959
length952779
definitionB6Ng01-257D04.b B6Ng01-257D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,812,186 - 5,812,743)(5,707,581 - 5,708,351)
sequence
gaattccattaagatttagagctaacacatagcaacaacgattgcttttg
aaaatgcactttaaactttctatatctgttttcgttttacaaaaacagtt
gaagatagttcactgtcttcttacacaactcacatcgctctccagggatg
ttttacactagtctgtcatttgcttcaacttttatggtcacatgttgttg
ttatctaaagtccgagctgtgggcagatttcctcagctctttacccgaca
tcctttttctgccccaggatctcacccaggacaacatactgtacctagac
gtttagttctcctaacagctctttgatctggatgactttgagagataaga
gaagtaagtgcccagattgtggaagatgtcagtttggggtaacatttttc
acgatttgactgcagttggggtggcacataagggcagtacattcttataa
tatcacacgtgctattgttacagggccacagacctcagcacaaatgactc
catgatgcgagtgccattcaggctgtaaaacctcagcatgcagacagcat
cacctgccaaaactacaacaaaggcttaatccaaaagtccacagctctgg
gaaagtctcaaaatgtaatcagcttgctttctttttttttttgcttctgg
tgaactcttcttgttaactggagtatgtcaacccagaacacggtggtggt
ggggtgttgctgaaaagctcaacctgagaaaggtttggtgctacactggg
atccccaagcccctttatagccgtcagctggctgggtaataaagaccttc
tattggctgaacccatgtctgagcaatcttctctggtgaggaccccacag
ctggtcccagggcaactgctgttgctggagtggaccgtggcctttgggct
gaggtcttgcccagtttcttggccaggagtcactctttttaccccatttc
cc

gaattctcatgacatttcaataaaatgtgtgagcgtgtctacacactctg
aagaagggcatttctactgggtaagtgctgtcaggcattacctaagcagt
ggacactgtgtgactcaaaagttccaagcccatgttcactccagatttga
ataggactctggaagcggtttgtggtccctcttctggtagccgttcttta
atcgttcacggatttgttctcctagccttacattgggaacaatgattagt
ttactttatggaacttctaagattagaggcccttctctcctgctgcctgg
aaactagtaatagtttatacttgtgttaattttaagggaaaaaaaatctc
cctatgaactagtttccatgtacttattttgtaagaagctaccagtacag
ttattttagaagacaaaatagagaacagtgccagtggatttcagtttatt
ccaacacactgcgcatttcccctgataaaaaatccttgggtcatgtaagt
gggttacggtaggaaggtgggtggatagcgtagaagagtgtcggctgcta
tggtattagggggttttagaggccttctgctgtggcccttcttcatattc
accaagcagcaaggacccagacacaggacagctttttctccttggtaaac
tcagtaggtcgaagactcttgaaccccaaattcaaagcctgtcttgtcat
tatgtcatcgtcttccatcctcaagccaagaagtgatttattctctttat
tccttcaattgcttggatagtttgaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_5812186_5812743
seq2: B6Ng01-257D04.b_46_603 (reverse)

seq1  GGCAGGTGATGCTGTCTGCATGCTGAGGTTTTACAGCCTGAATGGCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGATGCTGTCTGCATGCTGAGGTTTTACAGCCTGAATGGCACTC  50

seq1  GCATCATGGAGTCATTTGTGCTGAGGTCTGTGGCCCTGTAACAATAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGGAGTCATTTGTGCTGAGGTCTGTGGCCCTGTAACAATAGCAC  100

seq1  GTGTGATATTATAAGAATGTACTGCCCTTATGTGCCACCCCAACTGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATATTATAAGAATGTACTGCCCTTATGTGCCACCCCAACTGCAGT  150

seq1  CAAATCGTGAAAAATGTTACCCCAAACTGACATCTTCCACAATCTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGTGAAAAATGTTACCCCAAACTGACATCTTCCACAATCTGGGCA  200

seq1  CTTACTTCTCTTATCTCTCAAAGTCATCCAGATCAAAGAGCTGTTAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTCTTATCTCTCAAAGTCATCCAGATCAAAGAGCTGTTAGGAG  250

seq1  AACTAAACGTCTAGGTACAGTATGTTGTCCTGGGTGAGATCCTGGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACGTCTAGGTACAGTATGTTGTCCTGGGTGAGATCCTGGGGCAG  300

seq1  AAAAAGGATGTCGGGTAAAGAGCTGAGGAAATCTGCCCACAGCTCGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGATGTCGGGTAAAGAGCTGAGGAAATCTGCCCACAGCTCGGACT  350

seq1  TTAGATAACAACAACATGTGACCATAAAAGTTGAAGCAAATGACAGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAACAACAACATGTGACCATAAAAGTTGAAGCAAATGACAGACTA  400

seq1  GTGTAAAACATCCCTGGAGAGCGATGTGAGTTGTGTAAGAAGACAGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAACATCCCTGGAGAGCGATGTGAGTTGTGTAAGAAGACAGTGAA  450

seq1  CTATCTTCAACTGTTTTTGTAAAACGAAAACAGATATAGAAAGTTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCAACTGTTTTTGTAAAACGAAAACAGATATAGAAAGTTTAAAG  500

seq1  TGCATTTTCAAAAGCAATCGTTGTTGCTATGTGTTAGCTCTAAATCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCAAAAGCAATCGTTGTTGCTATGTGTTAGCTCTAAATCTTAA  550

seq1  TGGAATTC  558
      ||||||||
seq2  TGGAATTC  558


seq1: chr6_5707581_5708351
seq2: B6Ng01-257D04.g_67_845

seq1  GAATTCTCATGACATTTCAATAAAATGTGTGAGCGTGTCTACACACTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGACATTTCAATAAAATGTGTGAGCGTGTCTACACACTCTG  50

seq1  AAGAAGGGCATTTCTACTGGGTAAGTGCTGTCAGGCATTACCTAAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGCATTTCTACTGGGTAAGTGCTGTCAGGCATTACCTAAGCAGT  100

seq1  GGACACTGTGTGACTCAAAAGTTCCAAGCCCATGTTCACTCCAGATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGTGTGACTCAAAAGTTCCAAGCCCATGTTCACTCCAGATTTGA  150

seq1  ATAGGACTCTGGAAGCGGTTTGTGGTCCCTCTTCTGGTAGCCGTTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACTCTGGAAGCGGTTTGTGGTCCCTCTTCTGGTAGCCGTTCTTTA  200

seq1  ATCGTTCACGGATTTGTTCTCCTAGCCTTACATTGGGAACAATGATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCACGGATTTGTTCTCCTAGCCTTACATTGGGAACAATGATTAGT  250

seq1  TTACTTTATGGAACTTCTAAGATTAGAGGCCCTTCTCTCCTGCTGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATGGAACTTCTAAGATTAGAGGCCCTTCTCTCCTGCTGCCTGG  300

seq1  AAACTAGTAATAGTTTATACTTGTGTTAATTTTAAGGGAAAAAAAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTAATAGTTTATACTTGTGTTAATTTTAAGGGAAAAAAAATCTC  350

seq1  CCTATGAACTAGTTTCCATGTACTTATTTTGTAAGAAGCTACCAGTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAACTAGTTTCCATGTACTTATTTTGTAAGAAGCTACCAGTACAG  400

seq1  TTATTTTAGAAGACAAAATAGAGAACAGTGCCAGTGGATTTCAGTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGAAGACAAAATAGAGAACAGTGCCAGTGGATTTCAGTTTATT  450

seq1  CCAACACACTGCGCATTTCCCCTGATAAAAAATCCTTGGGTCATGTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACTGCGCATTTCCCCTGATAAAAAATCCTTGGGTCATGTAAGT  500

seq1  GGGTTACGGTAGGAAGGTGGGTGGATAGCGTAGAAGAGTGTCGGCTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACGGTAGGAAGGTGGGTGGATAGCGTAGAAGAGTGTCGGCTGCTA  550

seq1  TGGTATTAGGGGGTTTTAGAGGCCTTCTGCTGTGGCCCTTCTTCATA-TC  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGTATTAGGGGGTTTTAGAGGCCTTCTGCTGTGGCCCTTCTTCATATTC  600

seq1  ACCAAGCAGCAAGGACCCAGACACAGGACAGC-TTTTCTCC-TGGTAAAC  647
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  ACCAAGCAGCAAGGACCCAGACACAGGACAGCTTTTTCTCCTTGGTAAAC  650

seq1  TCAG-AGGTCGAAGACTCTTG-ACCCCAAATTCAAAGCCTGTC-TGTCA-  693
      |||| |||||||||||||||| ||||||||||||||||||||| ||||| 
seq2  TCAGTAGGTCGAAGACTCTTGAACCCCAAATTCAAAGCCTGTCTTGTCAT  700

seq1  TATGTCATCGTCTTCCAT-CTCAAGCCAAGAAGTGATTTATTCT-TTTAT  741
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  TATGTCATCGTCTTCCATCCTCAAGCCAAGAAGTGATTTATTCTCTTTAT  750

seq1  T-CTTCAATTTGCTGTGATAGTTTAGAAATG  771
      | |||||| |||||  |||||||| ||||||
seq2  TCCTTCAA-TTGCTTGGATAGTTT-GAAATG  779


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