BAC Information

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BAC

Clone NameB6Ng01-257J20
Chromosome6 (Build37)
Map Location 121,049,002 - 121,159,773
singlet/doubletdoublet
Overlap geneMinpp1-ps, Pex26
Upstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793
Downstream geneTuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257J20.bB6Ng01-257J20.g
ACCGA063267GA063268
length5911,150
definitionB6Ng01-257J20.b B6Ng01-257J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,049,002 - 121,049,598)(121,158,619 - 121,159,773)
sequence
actctatagaccaggctggccttgaactcagcgatcggactgcctctgcc
tcccaagtgctgggattgaaggtgtgcgccacctctgctgggctacatct
gaattattaccaactgctgggggtggacaaactccaaccagtggccaaat
ccaacctccaagtaagacgctttttttaaaatatatttcaaggattgagg
gaaacccagacaagactcattctataattgatgaaagttacataaaaatt
cctatttcataaattacagcgtcaatggcctatagccatgcccaccggct
ctgcattatctccaacacctttcacaatattcctgaaaggctgtctctgg
gtatgggtgtgggagtgggggactcccagtgacatgcagtcctgccccag
ctgcatgtggtgggaaatcacctcagtacagaagcagaaggttgacaggg
gtgggggcttttctgaaacaacttttgagaggccattacccacactgaaa
tggaactatatagtgatgccactgctttgatatgacccatattcctatag
tacacccattgtactcccaagactacacagagagctttctt
gaattccctatcaagggccacttcatacttaagagatataacccagcttt
tcttccctccctcttttctctggcaacttcccaccacacaagtcactgtg
ggaagttaagagttcttcaagatgtaggtggagctgctgtggccagatgt
tggctctgtttccaaacatagatgaagacacacctttgcttctgtgctca
ggaagcagcagagtaaaacttatctaggtagtagtttattctgttggctc
acctttcatgtatttgtctatgagtttcttgaggagaggatacatgtttt
aatcatctttgcatgtgagaaagtactgaaaacacttcccactgatacac
ggcctccaagctggaactgcctaccccaaggactccagataaactgcctc
cactgctgtaacacacatgaagagttctggggacaaagtgctgggccagc
agcatcacagtgcccacacagaggaaggacccaggtaggtcacagtctta
tactgtaatagcttaaaattggagactcagtcagatggcggtagacacct
ttaattccaccactctggaggcagaggcaagcagatctctgtgagtttga
ggccagcctggtctacagagtgagttccaggacagccagagctgcacaga
gaaaccctgtatcaataataataataataataataataataatagagact
cacagttaaaacaaacatggcaaatgctcaataaagaatggttactatta
ctagtttcacgatttatttctcttcctatggcatattctattacttcttc
cattcatttatcacttaccattttatatgctttggattacagggttgtgt
gtacttgtgtttcaacatgcctataaaatttgcgacatctgtgttacatt
gttcggcttactgcctgccccaccagggctcagacaatgaacctgaataa
tttttcacggtcttcttttgttaagcaatcaatatactatgaacaggctc
ttaatgtttcagggaaagctgatgatactagtcacagtgatgacgtcagt
gcatcttaccatgatgatatccctggaatatctcaccctatgatagcatg
gctatactacaggctctaactttggttcccgaagtagaaacggaatgttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121049002_121049598
seq2: B6Ng01-257J20.b_45_641

seq1  GAATTCACTCTATAGACCAGGCTGGCCTTGAACTCAGCGATCGGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTTGAACTCAGCGATCGGACTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTGAAGGTGTGCGCCACCTCTGCTGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTGAAGGTGTGCGCCACCTCTGCTGGGCT  100

seq1  ACATCTGAATTATTACCAACTGCTGGGGGTGGACAAACTCCAACCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAATTATTACCAACTGCTGGGGGTGGACAAACTCCAACCAGTGG  150

seq1  CCAAATCCAACCTCCAAGTAAGACGCTTTTTTTAAAATATATTTCAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCAACCTCCAAGTAAGACGCTTTTTTTAAAATATATTTCAAGGA  200

seq1  TTGAGGGAAACCCAGACAAGACTCATTCTATAATTGATGAAAGTTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAAACCCAGACAAGACTCATTCTATAATTGATGAAAGTTACATA  250

seq1  AAAATTCCTATTTCATAAATTACAGCGTCAATGGCCTATAGCCATGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTATTTCATAAATTACAGCGTCAATGGCCTATAGCCATGCCCA  300

seq1  CCGGCTCTGCATTATCTCCAACACCTTTCACAATATTCCTGAAAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCTGCATTATCTCCAACACCTTTCACAATATTCCTGAAAGGCTGT  350

seq1  CTCTGGGTATGGGTGTGGGAGTGGGGGACTCCCAGTGACATGCAGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTATGGGTGTGGGAGTGGGGGACTCCCAGTGACATGCAGTCCTG  400

seq1  CCCCAGCTGCATGTGGTGGGAAATCACCTCAGTACAGAAGCAGAAGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTGCATGTGGTGGGAAATCACCTCAGTACAGAAGCAGAAGGTTG  450

seq1  ACAGGGGTGGGGGCTTTACTGAGACAGCTTTTGAGAGGCCATTACCCACA  500
      ||||||||||||||||| |||| ||| |||||||||||||||||||||||
seq2  ACAGGGGTGGGGGCTTTTCTGAAACAACTTTTGAGAGGCCATTACCCACA  500

seq1  CTGAAATGGAACTATATAGTGATGCCACTGTTTTGAGATGACCCATATTC  550
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  CTGAAATGGAACTATATAGTGATGCCACTGCTTTGATATGACCCATATTC  550

seq1  CTATAGTAAACCCAGTGTACTCCCAAGACGACACAGAGAGCTTTCTT  597
      |||||||| ||||| |||||||||||||| |||||||||||||||||
seq2  CTATAGTACACCCATTGTACTCCCAAGACTACACAGAGAGCTTTCTT  597

seq1: chr6_121158619_121159773
seq2: B6Ng01-257J20.g_64_1213 (reverse)

seq1  AAACATTCCTTTTCTTTCCTCTGGAACCAAAAGGTTTAGAGCTTGTAGTA  50
      ||||||||| |||| | | || |||||||||    ||||||| |||||||
seq2  AAACATTCCGTTTC-TACTTCGGGAACCAAA---GTTAGAGCCTGTAGTA  46

seq1  TAGCCATGGCCTATCATAGGGGTGAGATATT-CAGGGATATCATCATTGT  99
      ||||||||  |||||||| |||||||||||| ||||||||||||||| ||
seq2  TAGCCATG--CTATCATA-GGGTGAGATATTCCAGGGATATCATCATGGT  93

seq1  AAGATGCAATTGGACGTCATCACTGTGACTAGTATCATCAGCTTTTCCCT  149
      |||||||| |  |||||||||||||||||||||||||||||| |||||||
seq2  AAGATGCACT--GACGTCATCACTGTGACTAGTATCATCAGC-TTTCCCT  140

seq1  GAAACATTAAGAGCCTGTTCATAGTATATTTGATTGCTTA--CAAAGAAG  197
      |||||||||||||||||||||||||||| |||||||||||   |||||||
seq2  GAAACATTAAGAGCCTGTTCATAGTATA-TTGATTGCTTAACAAAAGAAG  189

seq1  A-CGTGAAAAATTATTCAGGTTCATTGTCTGAGCCCTGGTGGGGCAGGCA  246
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAAAAATTATTCAGGTTCATTGTCTGAGCCCTGGTGGGGCAGGCA  239

seq1  GTAAGCCGAACAATGTAACACAGATGTCGC-AATTTTATAGGCATGTTGA  295
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAAGCCGAACAATGTAACACAGATGTCGCAAATTTTATAGGCATGTTGA  289

seq1  AACACAAGTACACACAA-CCTGTAATCCAAAGCATATAAAATGGTAAGTG  344
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACACAAGTACACACAACCCTGTAATCCAAAGCATATAAAATGGTAAGTG  339

seq1  ATAAATGAATGGAAGAAGTAATAGAATATGCCATAGGAAGAGAAATAAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAATGGAAGAAGTAATAGAATATGCCATAGGAAGAGAAATAAAT  389

seq1  CGTGAAACTAGTAATAGTAACCATTCTTTATTGAGCATTTGCCATGTTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAACTAGTAATAGTAACCATTCTTTATTGAGCATTTGCCATGTTTG  439

seq1  TTTTAACTGTGAGTCTCTATTATTATTATTATTATTATTATTATTATTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGTGAGTCTCTATTATTATTATTATTATTATTATTATTATTGA  489

seq1  TACAGGGTTTCTCTGTGCAGCTCTGGCTGTCCTGGAACTCACTCTGTAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTTTCTCTGTGCAGCTCTGGCTGTCCTGGAACTCACTCTGTAGA  539

seq1  CCAGGCTGGCCTCAAACTCACAGAGATCTGCTTGCCTCTGCCTCCAGAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACTCACAGAGATCTGCTTGCCTCTGCCTCCAGAGT  589

seq1  GGTGGAATTAAAGGTGTCTACCGCCATCTGACTGAGTCTCCAATTTTAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATTAAAGGTGTCTACCGCCATCTGACTGAGTCTCCAATTTTAAG  639

seq1  CTATTACAGTATAAGACTGTGACCTACCTGGGTCCTTCCTCTGTGTGGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAGTATAAGACTGTGACCTACCTGGGTCCTTCCTCTGTGTGGGC  689

seq1  ACTGTGATGCTGCTGGCCCAGCACTTTGTCCCCAGAACTCTTCATGTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATGCTGCTGGCCCAGCACTTTGTCCCCAGAACTCTTCATGTGTG  739

seq1  TTACAGCAGTGGAGGCAGTTTATCTGGAGTCCTTGGGGTAGGCAGTTCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAGTGGAGGCAGTTTATCTGGAGTCCTTGGGGTAGGCAGTTCCA  789

seq1  GCTTGGAGGCCGTGTATCAGTGGGAAGTGTTTTCAGTACTTTCTCACATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGGCCGTGTATCAGTGGGAAGTGTTTTCAGTACTTTCTCACATG  839

seq1  CAAAGATGATTAAAACATGTATCCTCTCCTCAAGAAACTCATAGACAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGATTAAAACATGTATCCTCTCCTCAAGAAACTCATAGACAAAT  889

seq1  ACATGAAAGGTGAGCCAACAGAATAAACTACTACCTAGATAAGTTTTACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGGTGAGCCAACAGAATAAACTACTACCTAGATAAGTTTTACT  939

seq1  CTGCTGCTTCCTGAGCACAGAAGCAAAGGTGTGTCTTCATCTATGTTTGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTCCTGAGCACAGAAGCAAAGGTGTGTCTTCATCTATGTTTGG  989

seq1  AAACAGAGCCAACATCTGGCCACAGCAGCTCCACCTACATCTTGAAGAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGCCAACATCTGGCCACAGCAGCTCCACCTACATCTTGAAGAAC  1039

seq1  TCTTAACTTCCCACAGTGACTTGTGTGGTGGGAAGTTGCCAGAGAAAAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTTCCCACAGTGACTTGTGTGGTGGGAAGTTGCCAGAGAAAAGA  1089

seq1  GGGAGGGAAGAAAAGCTGGGTTATATCTCTTAAGTATGAAGTGGCCCTTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAAGAAAAGCTGGGTTATATCTCTTAAGTATGAAGTGGCCCTTG  1139

seq1  ATAGGGAATTC  1155
      |||||||||||
seq2  ATAGGGAATTC  1150