BAC Information

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BAC

Clone NameB6Ng01-258I08
Chromosome6 (Build37)
Map Location 133,105,962 - 133,244,897
singlet/doubletdoublet
Overlap gene5530400C23Rik
Upstream genePrb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I08.bB6Ng01-258I08.g
ACCGA063940GA063941
length1,1681,176
definitionB6Ng01-258I08.b B6Ng01-258I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,243,714 - 133,244,897)(133,105,962 - 133,106,761)
sequence
gaattcagaggacataagaccaaagaaagatgaattctgtagttctataa
atgaagtcaactcaaagggtaatcattgttatcaaataaattaatgaaat
acataaaattaaaagagcaatggagcataaaggagctgtggagctatgtt
actcaggggcacaagtacattgtagatattgtgcaatattcgcttagacc
atcaaagatgtatgactttgtactgtctgaatgctaagatttgaaatgag
gccgaggcagatgccatgcacatattttgccagttagcatatttttaaac
tatgatgtgacaaatactgaagcaaggtctttctatttattaaatttgac
tcagtcatcttacctaatttctccggggccctctccaaaaagatacatca
tgattaactactcgtggtcggagcaatttaagaggatgaggaggaggtac
tctctcttgaccagatcctccctcaatcaaaggtttctgctttgactgta
tttgttggggtgaaccttgtgagttttcaggagatgaagaaagattttta
acctccactacatttctttttctaggttgatttttctcttgttttccagt
ggagtcacaatgctcttgactctctgcctgttgtgattcctccggttcta
cttgctgttcattcccagagttggacgaaggatccacttttactaatggt
gatgattcttggatattccctatatttgcagcagcagcagaaggacctaa
ctctgagtcctgggttttctctgcagggcctgcatagaaagggccagaag
atgtgagcactttgatcaaagatattccttatttttttttccctaacctg
atcacaaagtcctttccctccgaacatgtctgccaaatgctaacttcttc
tcccagatatctgcatcttggcttctaattccacattccaaaaatacaga
gttttttgtattcataaccctgggttggagtattgtaccctacacctggc
aatcaaaagaattggagacttatttaccatataggcattccaatgttcaa
aagaatatataggaaagtacatttacatcagatggttgaaaggtgtacct
cacggcaggtataaaattttgatgttcaagacttcatagaccttgccatt
ctgatgaagcagttcaat
gaattctttgtttagctctgtaccccatttttaatggggttatttgagtt
tctggagtccagcttcttgagctctttgtatattttggatattagttcct
aagagatttaggattggtaaaaatcctttcctgttggtggcattgtttac
ttactgacagtgtcctttgccttaatgaagctttgcaattttatgagttc
ccttttatcgattcttgatataacagaacaagccattgctgttctgttta
ggaatttttcccttgtgcccatatctttgaggcacttccccaggttctcc
agtataaatttcagtgtctctggttttatgctgagttctttgatccactt
aggcttgagctttgtacaaggagataagaatggatcaattcacgttcttc
tacatgataactgccaattgtgggagagccatttgctgaaaatgctgtct
ttttccactggatggttttatatcccttgtcaaagatcaagtgaccatac
gagtgtggattcatttctgggtcttcaattctattccattcatctacctg
tctattggtgtaccagtaccatgcagtttttatcacaatttcagctggag
atcaggcatggtgattccactagaggtttttttaattgagaataattttt
gctatcttagatttctttattattccagataaattttcaaattgccattt
ctaacttagtgaagaactgcattgggattttgatgggaattacattgaat
ctgtagattgcttttggcaggatagccattttgactatattaatcttgct
aatccatgagcatgggatatctttccattttcttagatcatctacaattt
tttttctttagacttgaagttcttacaaaagggtagaaatttataaactc
ttcatattttttattttgtgaaatcataatataattacatcatttcttca
tctgaatcaataggtctcaacttctatggggtaacaatttaatataattc
cattttttgctgacacaaacacaacaatagttaccacagtttgtgcagtt
atttcacaaattattattttttactgtatttgctactaatggtgatgata
atgccaaatatctgaaattgcaagagtatctgaagtaatggtcttcctga
aaggctctatttaatctccaatcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133243714_133244897
seq2: B6Ng01-258I08.b_47_1214 (reverse)

seq1  ATTGAACTGCTTTCATTTCAGAGATGGCAAAGTCTAATTAAAATTCTTTG  50
      |||||||||| ||||  ||||| ||||||| |||||  | || |   |||
seq2  ATTGAACTGC-TTCA--TCAGA-ATGGCAAGGTCTA--TGAAGT--CTTG  42

seq1  AACATTCAAAATTTTATACTGTGCCGTGAAGTACACTTTCCAACCATCCT  100
      |||| ||||||||||||||  |||||||| |||||| || ||||||| ||
seq2  AACA-TCAAAATTTTATAC-CTGCCGTGAGGTACACCTTTCAACCAT-CT  89

seq1  GATGTTAATGTACTTTCCTTATTATTATTCTTTTG-ACATTGGAAATGCC  149
      ||||| |||||||||||| |||   |||||||||| ||||||| ||||||
seq2  GATGTAAATGTACTTTCC-TAT--ATATTCTTTTGAACATTGG-AATGCC  135

seq1  TAATATGGTAAATAAGTCTCCAAATCTTTTTGATTGCCAGGTGTAGGGTA  199
      | ||||||||||||||||||||| || |||||||||||||||||||||||
seq2  T-ATATGGTAAATAAGTCTCCAATTC-TTTTGATTGCCAGGTGTAGGGTA  183

seq1  CAATACT-CAAACCAGGGTTATGAATACAAAAAACTCTGTATTTTTGGAA  248
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCCAACCCAGGGTTATGAATACAAAAAACTCTGTATTTTTGGAA  233

seq1  TGTGGAATTAGAAAGCCAAGATGCAGATATCTGGGAGAAGAAGTTAGCAT  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATTAG-AAGCCAAGATGCAGATATCTGGGAGAAGAAGTTAGCAT  282

seq1  TTGGCAGACATGTTCGGAGGGAAAGGACTTTGTGATCAGGTTAGGGAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGACATGTTCGGAGGGAAAGGACTTTGTGATCAGGTTAGGGAAAA  332

seq1  AAAAATAAGGAATATCTTTGATCAAAGTGCTCACATCTTCTGGCCCTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGGAATATCTTTGATCAAAGTGCTCACATCTTCTGGCCCTTTC  382

seq1  TATGCAGGCCCTGCAGAGAAAACCCAGGACTCAGAGTTAGGTCCTTCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGCCCTGCAGAGAAAACCCAGGACTCAGAGTTAGGTCCTTCTGC  432

seq1  TGCTGCTGCAAATATAGGGAATATCCAAGAATCATCACCATTAGTAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCAAATATAGGGAATATCCAAGAATCATCACCATTAGTAAAAG  482

seq1  TGGATCCTTCGTCCAACTCTGGGAATGAACAGCAAGTAGAACCGGAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTTCGTCCAACTCTGGGAATGAACAGCAAGTAGAACCGGAGGAA  532

seq1  TCACAACAGGCAGAGAGTCAAGAGCATTGTGACTCCACTGGAAAACAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGGCAGAGAGTCAAGAGCATTGTGACTCCACTGGAAAACAAGA  582

seq1  GAAAAATCAACCTAGAAAAAGAAATGTAGTGGAGGTTAAAAATCTTTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCAACCTAGAAAAAGAAATGTAGTGGAGGTTAAAAATCTTTCTT  632

seq1  CATCTCCTGAAAACTCACAAGGTTCACCCCAACAAATACAGTCAAAGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTGAAAACTCACAAGGTTCACCCCAACAAATACAGTCAAAGCAG  682

seq1  AAACCTTTGATTGAGGGAGGATCTGGTCAAGAGAGAGTACCTCCTCCTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTGATTGAGGGAGGATCTGGTCAAGAGAGAGTACCTCCTCCTCA  732

seq1  TCCTCTTAAATTGCTCCGACCACGAGTAGTTAATCATGATGTATCTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTAAATTGCTCCGACCACGAGTAGTTAATCATGATGTATCTTTTT  782

seq1  GGAGAGGGCCCCGGAGAAATTAGGTAAGATGACTGAGTCAAATTTAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGCCCCGGAGAAATTAGGTAAGATGACTGAGTCAAATTTAATAA  832

seq1  ATAGAAAGACCTTGCTTCAGTATTTGTCACATCATAGTTTAAAAATATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGACCTTGCTTCAGTATTTGTCACATCATAGTTTAAAAATATGC  882

seq1  TAACTGGCAAAATATGTGCATGGCATCTGCCTCGGCCTCATTTCAAATCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGCAAAATATGTGCATGGCATCTGCCTCGGCCTCATTTCAAATCT  932

seq1  TAGCATTCAGACAGTACAAAGTCATACATCTTTGATGGTCTAAGCGAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCAGACAGTACAAAGTCATACATCTTTGATGGTCTAAGCGAATA  982

seq1  TTGCACAATATCTACAATGTACTTGTGCCCCTGAGTAACATAGCTCCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAATATCTACAATGTACTTGTGCCCCTGAGTAACATAGCTCCACA  1032

seq1  GCTCCTTTATGCTCCATTGCTCTTTTAATTTTATGTATTTCATTAATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTATGCTCCATTGCTCTTTTAATTTTATGTATTTCATTAATTTA  1082

seq1  TTTGATAACAATGATTACCCTTTGAGTTGACTTCATTTATAGAACTACAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACAATGATTACCCTTTGAGTTGACTTCATTTATAGAACTACAG  1132

seq1  AATTCATCTTTCTTTGGTCTTATGTCCTCTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||
seq2  AATTCATCTTTCTTTGGTCTTATGTCCTCTGAATTC  1168

seq1: chr6_133105962_133106761
seq2: B6Ng01-258I08.g_445_1241

seq1  ATGGATCAATTCACGTTCTTCTACATGATAACTGCCAATTGTGGGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAATTCACGTTCTTCTACATGATAACTGCCAATTGTGGGAGAGC  50

seq1  CATTTGCTGAAAATGCTGTCTTTTTCCACTGGATGGTTTTATATCCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGAAAATGCTGTCTTTTTCCACTGGATGGTTTTATATCCCTTG  100

seq1  TCAAAGATCAAGTGACCATACGAGTGTGGATTCATTTCTGGGTCTTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCAAGTGACCATACGAGTGTGGATTCATTTCTGGGTCTTCAAT  150

seq1  TCTATTCCATTCATCTACCTGTCTATTGGTGTACCAGTACCATGCAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCATTCATCTACCTGTCTATTGGTGTACCAGTACCATGCAGTTT  200

seq1  TTATCACAATTTCAGCTGGAGATCAGGCATGGTGATTCCACTAGAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAATTTCAGCTGGAGATCAGGCATGGTGATTCCACTAGAGGTTT  250

seq1  TTTTAATTGAGAATAATTTTTGCTATCTTAGATTTCTTTATTATTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGAGAATAATTTTTGCTATCTTAGATTTCTTTATTATTCCAGA  300

seq1  TAAATTTTCAAATTGCCATTTCTAACTTAGTGAAGAACTGCATTGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTCAAATTGCCATTTCTAACTTAGTGAAGAACTGCATTGGGATT  350

seq1  TTGATGGGAATTACATTGAATCTGTAGATTGCTTTTGGCAGGATAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGAATTACATTGAATCTGTAGATTGCTTTTGGCAGGATAGCCAT  400

seq1  TTTGACTATATTAATCTTGCTAATCCATGAGCATGGGATATCTTTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTATATTAATCTTGCTAATCCATGAGCATGGGATATCTTTCCATT  450

seq1  TTCTTAGATCATCTACAA-TTTTTTTCTTTAGACTTGAAGTTCTTACAAA  499
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTTAGATCATCTACAATTTTTTTTCTTTAGACTTGAAGTTCTTACAAA  500

seq1  AGGGTAGAAATTTATAAACTCTTCATATTTTTTATTTTGTGAAATCATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAAATTTATAAACTCTTCATATTTTTTATTTTGTGAAATCATAA  550

seq1  TATAATTACATCATTTCTTCCATCTGAATCAATAGGTCTCAAACTTCCTA  599
      ||||||||||||||||||| |||||||||||||||||||| ||||||   
seq2  TATAATTACATCATTTCTT-CATCTGAATCAATAGGTCTC-AACTTC--T  596

seq1  ATGGGGTAACAATTTAATATAATTTCCCATTTTTTGCTGACCACAAACAC  649
      ||||||||||||||||||||||||  |||||||||||||| |||||||||
seq2  ATGGGGTAACAATTTAATATAATT--CCATTTTTTGCTGA-CACAAACAC  643

seq1  A--CATAGTTA-CACAGTTTTGTTGCAGTAATTTTCACAAATTATTATTT  696
      |   ||||||| ||||||||   |||||| | ||||||||||||||||||
seq2  AACAATAGTTACCACAGTTT--GTGCAGTTA-TTTCACAAATTATTATTT  690

seq1  TTAACTGTAATTTTGCTACT-ATTGTGATTGATAATG-CAAATATCTGAA  744
      || ||||||  ||||||||| || |||| |||||||| ||||||||||||
seq2  TTTACTGTA--TTTGCTACTAATGGTGA-TGATAATGCCAAATATCTGAA  737

seq1  A-TGC-AGAGTATCTGATGT-ATGGTCTCTCTGAAAGGGTCATTTAAATC  791
      | ||| ||||||||||| || |||||||  |||||||| ||  || ||||
seq2  ATTGCAAGAGTATCTGAAGTAATGGTCTTCCTGAAAGGCTCTATTTAATC  787

seq1  TCC-ATCACA  800
      ||| ||||||
seq2  TCCAATCACA  797