BAC Information

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BAC

Clone NameB6Ng01-259D21
Chromosome6 (Build37)
Map Location 130,509,576 - 130,625,219
singlet/doubletdoublet
Overlap geneLOC667793, EG667798
Upstream geneKlre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779
Downstream geneEG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259D21.bB6Ng01-259D21.g
ACCGA064474GA064475
length618983
definitionB6Ng01-259D21.b B6Ng01-259D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,624,602 - 130,625,219)(130,509,576 - 130,510,437)
sequence
gaattctcataaagaaaccatatgttgatagtattcaaaaacgttttact
cccaaattcaacttatattaagtacttatttgaaaaacaagatatgaaaa
ctctttcactcagctttaatcaactgacattattgattattcattgtata
gaattcattttttaaatcattgaataaacagtgttctaaagtgtaaggtt
tttaacaagaataattgtagtaactatgcaaatacaaacaagatgcatat
gtttatagttaatatgggagattgttagtatttatgagatatattctctt
tgaagattactgtgttcttagtctttgaactttttaaagagtaaatttta
atctctcatccctccttgtttcaattatcaataaatactttagaactgtc
tattactattgccttggtgtatttagggtttattttatactgggtgattt
cattcataccttccagtgtctcattgctaatgcaaacagaattatgtttc
aaaatatcaaaagatggcctagtcggccatcactggaaagagaggcccat
tggacacgcaaactttatatgccccagtacaggggaacgccagggccata
aaaggggagtgggtgggt
gaattccagagttgttgaaccagttttaaatcccaccaggatcagtccac
atgctttccagcatgtgattctgcatgagtgtttaatcttagagaaagat
ggaacttcaggttcctgtggatttgcatttacttgatgactaaggacatt
gaattttcttcaagtggtccttggccattcttgttagtctgtggtgattt
atgtttatctctgtacctcattttttaatgagttgttttaagaaggttaa
cttcttgactttttatatattttgaatattagctctctatttgatgtgga
gttcttgaagaattttttcccaactgtaggttctcaaattctcctattga
ctttatcctgtggactgtgtcttttgtcttatagaatcttttcagtttat
gagttacaaatgttgtatatatgtatatatattcaaattaatgttaatat
acatgtaaacaaacacacgcacaaacaccaaacaaacatacatacaaaca
ctcacactcacagacacacaaatatatatatatatatatatatatatata
tatatatatatatatatacacacacacacacacacacacacacacacaca
cgcacatatatatatatatatttcctggaatgaaaatggtgaagtccttt
ccttgctagcatgagttgaatccataaaactagtggcatcactctcagtg
ggtcagtgcataattgtaatctcagcactggtgacataatcatgtgtatc
ctgtgactcactggagagacactgaagcacgcttgataagttccaggcca
gtgaaacagatacttcttcaagaataatgttgaaagtgaccaagatctgg
aaatgcactaagattgtaggtattctctctctaatctggtactaatgaca
tatagtgcatgtgttgtaagatagagcaatgctgttctctgttgtgccct
aataatcttacagactagtgctaatgcctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130624602_130625219
seq2: B6Ng01-259D21.b_45_662 (reverse)

seq1  ACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCCCTGTACTGGGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCCCTGTACTGGGGCAT  50

seq1  ATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  100

seq1  GCCATCTTTTGATATTTTGAAACATAATTCTGTTTGCATTAGCAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTTGATATTTTGAAACATAATTCTGTTTGCATTAGCAATGAGA  150

seq1  CACTGGAAGGTATGAATGAAATCACCCAGTATAAAATAAACCCTAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAGGTATGAATGAAATCACCCAGTATAAAATAAACCCTAAATAC  200

seq1  ACCAAGGCAATAGTAATAGACAGTTCTAAAGTATTTATTGATAATTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCAATAGTAATAGACAGTTCTAAAGTATTTATTGATAATTGAAA  250

seq1  CAAGGAGGGATGAGAGATTAAAATTTACTCTTTAAAAAGTTCAAAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGGATGAGAGATTAAAATTTACTCTTTAAAAAGTTCAAAGACTA  300

seq1  AGAACACAGTAATCTTCAAAGAGAATATATCTCATAAATACTAACAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGTAATCTTCAAAGAGAATATATCTCATAAATACTAACAATCT  350

seq1  CCCATATTAACTATAAACATATGCATCTTGTTTGTATTTGCATAGTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTAACTATAAACATATGCATCTTGTTTGTATTTGCATAGTTACT  400

seq1  ACAATTATTCTTGTTAAAAACCTTACACTTTAGAACACTGTTTATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATTCTTGTTAAAAACCTTACACTTTAGAACACTGTTTATTCAAT  450

seq1  GATTTAAAAAATGAATTCTATACAATGAATAATCAATAATGTCAGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAAAATGAATTCTATACAATGAATAATCAATAATGTCAGTTGAT  500

seq1  TAAAGCTGAGTGAAAGAGTTTTCATATCTTGTTTTTCAAATAAGTACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGAGTGAAAGAGTTTTCATATCTTGTTTTTCAAATAAGTACTTA  550

seq1  ATATAAGTTGAATTTGGGAGTAAAACGTTTTTGAATACTATCAACATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTTGAATTTGGGAGTAAAACGTTTTTGAATACTATCAACATATG  600

seq1  GTTTCTTTATGAGAATTC  618
      ||||||||||||||||||
seq2  GTTTCTTTATGAGAATTC  618

seq1: chr6_130509576_130510437
seq2: B6Ng01-259D21.g_194_1050

seq1  ATTTACTTGATGACTAAGGACATTGAATTTTCTTCAAGTGGTCCTTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTGATGACTAAGGACATTGAATTTTCTTCAAGTGGTCCTTGGCC  50

seq1  ATTCTTGTTAGTCTGTGGTGATTTATGTTTATCTCTGTACCTCATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTTAGTCTGTGGTGATTTATGTTTATCTCTGTACCTCATTTTTT  100

seq1  AATGAGTTGTTTTAAGAAGGTTAACTTCTTGACTTTTTATATATTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTGTTTTAAGAAGGTTAACTTCTTGACTTTTTATATATTTTGAA  150

seq1  TATTAGCTCTCTATTTGATGTGGAGTTCTTGAAGAATTTTTTCCCAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTCTCTATTTGATGTGGAGTTCTTGAAGAATTTTTTCCCAACTG  200

seq1  TAGGTTCTCAAATTCTCCTATTGACTTTATCCTGTGGACTGTGTCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTCAAATTCTCCTATTGACTTTATCCTGTGGACTGTGTCTTTTG  250

seq1  TCTTATAGAATCTTTTCAGTTTATGAGTTACAAATGTTGTATATATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGAATCTTTTCAGTTTATGAGTTACAAATGTTGTATATATGTAT  300

seq1  ATATATTCAAATTAATGTTAATATACATGTAAACAAACACACGCACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCAAATTAATGTTAATATACATGTAAACAAACACACGCACAAAC  350

seq1  ACCAAACAAACATACATACAAACACTCACACTCACAGACACACAAATATA  400
      |||||||||||||||||||||||||||||||||||||||||||||    |
seq2  ACCAAACAAACATACATACAAACACTCACACTCACAGACACACAA----A  396

seq1  TATATATATATATATATATATATATATATATATATATATATATATACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATACACA  446

seq1  CACACACACACACACACACACACACACACGCACATATATATATATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACGCACATATATATATATATATT  496

seq1  TCCTGGAATGAAAATGGTGAAGTCCTTTCCTTGCTAGCATGAGTTGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATGAAAATGGTGAAGTCCTTTCCTTGCTAGCATGAGTTGAATC  546

seq1  CATAAAACTAGTGGCATCACTCTCAGTGGGTCAGTGCATAATTGTAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACTAGTGGCATCACTCTCAGTGGGTCAGTGCATAATTGTAATCT  596

seq1  CAGCACTGGTGACATAATCATGTGTATCCTGTGACTCACTGGAGAGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGTGACATAATCATGTGTATCCTGTGACTCACTGGAGAGACAC  646

seq1  TGAAGCACGCTTGATAAGTTCCAGGCCAGTGAAACAGATACTTCTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACGCTTGATAAGTTCCAGGCCAGTGAAACAGATACTTCTTCAAG  696

seq1  AATAATGTTGAAAGTGACCAAGATCTGGAAATGCACTAAGATTGTAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTTGAAAGTGACCAAGATCTGGAAATGCACTAAGATTGTAGGTA  746

seq1  TTCTCTCTCTAATCTGGTACTAATGACATATAGTGCATGTGTTGTAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTAATCTGGTACTAATGACATATAGTGCATGTGTTGTAAGAT  796

seq1  AGAGCAATGCTGTTCTCTGTTGTGCCCTAATAATCTTACAGACTAGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGCAATGCTGTTCTCTGTTGTGCCCTAATAATCTTACAGACTA-GTGC  845

seq1  TAATGCCTGAAA  862
      ||||||||||||
seq2  TAATGCCTGAAA  857