BAC Information

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BAC

Clone NameB6Ng01-259F08
Chromosome6 (Build37)
Map Location 35,001,953 - 35,146,641
singlet/doubletdoublet
Overlap geneCnot4, Nup205
Upstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
Downstream gene1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259F08.bB6Ng01-259F08.g
ACCGA064540GA064541
length1,1511,083
definitionB6Ng01-259F08.b B6Ng01-259F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,145,508 - 35,146,641)(35,001,953 - 35,003,037)
sequence
gaattcttctgctaaaattttccaaggctcaggaaaaatggaacagagga
gagacaacaacaagaatacactttccaacagaatgacttaccaggagcat
taagtgttccaggtcccttctaagtgagatggggggttcattacccatct
gtatactcatgtgaatcattcgagcatcttcatctgcccgattcttcagc
tgtttcacctattgtatgtattaaacaaggcttaatgtaattttcttatg
cacaggttaataacaaaatcaagcaagtaactctataaaaaactccctta
aatacctttacatttgagcaacatgaaaaatacactagaaatttcactaa
aatattaagattatagtatcttaaggatcagagagagccagggagatggt
tcaataggtaaagatgcttgtgccacaagatggtggaaagaaccaagtcc
tacaggctgtcctgatttccaccaaatcctgcccagaacgacatgcccat
gtctgtacacatacacacacaacaaagaaaagaaggggggagggaggcag
agggcgggagggagggaactttctacttatggaagatgagatcatcagct
tctcaacagaggcattactaacatttggggccggccatctctacttctcg
attatcctaatactaatactaacatatgaaacttcacatccctggaacca
ctaagaccatattacagtgctgcaacaagcaaaactcacttgtccagcat
gcagtgaacgacattatgctgagaatcccttgtcttctaacatttgtgtg
aactaaaatgctaatgaaacaagaaattactttgttctgaggggaaaaaa
aacacatttattgctggaagtttcaaatactcctttctcaatattcaaca
gaaaaggtatagaaagttagtaaagagatggaaagacttgaaaggataga
atcaaacaattccagtgaattactgatgggaacaatccacagaatcagga
gaatacatgttcccttttctaattttcaacagatcaacttatccaaggca
taccacagttggggtactttaaggcaaaccttcaacattaaagctaccct
ggtatgtttctcttgactacagagattagtaacgaacaaaataactagta
a
gaattcatgccatctttcagactaaaaagaaaatgtaagtgagtaaaaag
agaagtggtgtgctcgctgctttctaatcccaaatgctctgcttggccat
tcactcaacaccaagattggctgacacctctgaaaccagcaagacaaaga
tggaaagtcacgcctcttcaaggaagagaatgtaagccattctcacatct
tccctgagtctagtttcatctgaatgtgatgtagtaaaaagatgccaaag
tgcctgaatgtgactgacattgtgctttgggtattagttaaaataaaatt
tccaaaaggtaaaatcataaattttatataaatataaaccatggtaaaaa
tatttaaataaatggagcaaaatttagtttttactactaaagaaattcct
tatttgtcaattagggagaagatcttaaaattgattatgtaaacataaat
ctgactttaaaaattaagtcctcagtttctctaagatcaataatcttttt
ggtttttttttcttttggatttttctttgagatagggtttctctgtagac
cctggctgtcctggcactccctttgcagatgaagctagatttgtctgcct
ctcctgagattacaggcatgtgccaccaagcccagccagaacagtgagat
tttatttgagaaacaatgacaaatgatttctagagaaatctgttttctaa
cacagtaatttctaggcaacacaacgacttgcatactatctaattccatg
tagtttaaataatttccgtgtttttttttttaaagggagctgagagaaaa
gaagatagaagtctatcaactaaagcgtagcccataagtctgtcagcttt
ctaagagtctgacactaacactaggcattgctgttgcatacctgatgtga
agaggctctgtggttctggagctgtaggccaatcactgggtgtctgtgga
gagctgggaaaaggaggaagcccacttggtatagggtttggggtggcgaa
aattgtctgagaataatgactgtgactctgttactgcccctcaaatgaga
cctcgcactgtgatgatgactgatgggaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35145508_35146641
seq2: B6Ng01-259F08.b_41_1191 (reverse)

seq1  TTACTAGTTA-TTTGTCGTTTACTAATTTCTTGGTAGTC-AGAGAACATT  48
      |||||||||| |||||   |||||||| |||  |||||| ||||||   |
seq2  TTACTAGTTATTTTGTTCGTTACTAATCTCT--GTAGTCAAGAGAAACAT  48

seq1  ACCA-GGTTGCTTTAATGTTG-AGGTTTGCTTTAAAGTACCC--ACTGTG  94
      |||| ||| |||||||||||| |||||||| |||||||||||  ||||||
seq2  ACCAGGGTAGCTTTAATGTTGAAGGTTTGCCTTAAAGTACCCCAACTGTG  98

seq1  GTATGCTTTGG-TAAG-TGATCTG-TGAAAA-TAGAAA--GGAACATGTA  138
      |||||| |||| |||| ||||||| |||||| ||||||  ||||||||||
seq2  GTATGCCTTGGATAAGTTGATCTGTTGAAAATTAGAAAAGGGAACATGTA  148

seq1  TTCTACTG-TTCTGTGGATTGTT-CCATCAGTAATTCACTGGAATTGTTT  186
      |||| ||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTCCTGATTCTGTGGATTGTTCCCATCAGTAATTCACTGGAATTGTTT  198

seq1  GATTCTATCC-TTCAAGTCTTTCCATCTCTTTACTAACTTTCTATACCTT  235
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATCCTTTCAAGTCTTTCCATCTCTTTACTAACTTTCTATACCTT  248

seq1  TTCTGTTGAATATTGAGAAAGGAGTA-TTGAAACTTCCAGCAATAAATGT  284
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTGTTGAATATTGAGAAAGGAGTATTTGAAACTTCCAGCAATAAATGT  298

seq1  GTTTTTTTTCCCCTCAGAACAAAGTAATTTCTTGTTTCATTAGCA-TTTA  333
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTTTTTTTCCCCTCAGAACAAAGTAATTTCTTGTTTCATTAGCATTTTA  348

seq1  GTTCACACAAATGTTAGAAGAC-AGGGATTCTCAGCATAATGTCGTTCAC  382
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTCACACAAATGTTAGAAGACAAGGGATTCTCAGCATAATGTCGTTCAC  398

seq1  TGCATGCTGGAC-AGTGAGTTTTGCTTGTTGCAGCACTGTAATATGGTCT  431
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGGACAAGTGAGTTTTGCTTGTTGCAGCACTGTAATATGGTCT  448

seq1  TAGTGGTTCCAGGGATGTGAAGTTTCATATGTTAGTATTAGTATTAGGAT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTCCAGGGATGTGAAGTTTCATATGTTAGTATTAGTATTAGGAT  498

seq1  AATCGAGAAGTAGAGATGGCCGGCCCCAAATGTTAGTAATGCCTCTGTTG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAGAAGTAGAGATGGCCGGCCCCAAATGTTAGTAATGCCTCTGTTG  548

seq1  AGAAGCTGATGATCTCATCTTCCATAAGTAGAAAGTTCCCTCCCTCCCGC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGATGATCTCATCTTCCATAAGTAGAAAGTTCCCTCCCTCCCGC  598

seq1  CCTCTGCCTCCCTCCCCCCTTCTTTTCTTTGTTGTGTGTGTATGTGTACA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCTCCCCCCTTCTTTTCTTTGTTGTGTGTGTATGTGTACA  648

seq1  GACATGGGCATGTCGTTCTGGGCAGGATTTGGTGGAAATCAGGACAGCCT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGCATGTCGTTCTGGGCAGGATTTGGTGGAAATCAGGACAGCCT  698

seq1  GTAGGACTTGGTTCTTTCCACCATCTTGTGGCACAAGCATCTTTACCTAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACTTGGTTCTTTCCACCATCTTGTGGCACAAGCATCTTTACCTAT  748

seq1  TGAACCATCTCCCTGGCTCTCTCTGATCCTTAAGATACTATAATCTTAAT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCATCTCCCTGGCTCTCTCTGATCCTTAAGATACTATAATCTTAAT  798

seq1  ATTTTAGTGAAATTTCTAGTGTATTTTTCATGTTGCTCAAATGTAAAGGT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGAAATTTCTAGTGTATTTTTCATGTTGCTCAAATGTAAAGGT  848

seq1  ATTTAAGGGAGTTTTTTATAGAGTTACTTGCTTGATTTTGTTATTAACCT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGGAGTTTTTTATAGAGTTACTTGCTTGATTTTGTTATTAACCT  898

seq1  GTGCATAAGAAAATTACATTAAGCCTTGTTTAATACATACAATAGGTGAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAAGAAAATTACATTAAGCCTTGTTTAATACATACAATAGGTGAA  948

seq1  ACAGCTGAAGAATCGGGCAGATGAAGATGCTCGAATGATTCACATGAGTA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGAAGAATCGGGCAGATGAAGATGCTCGAATGATTCACATGAGTA  998

seq1  TACAGATGGGTAATGAACCCCCCATCTCACTTAGAAGGGACCTGGAACAC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGGTAATGAACCCCCCATCTCACTTAGAAGGGACCTGGAACAC  1048

seq1  TTAATGCTCCTGGTAAGTCATTCTGTTGGAAAGTGTATTCTTGTTGTTGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTCCTGGTAAGTCATTCTGTTGGAAAGTGTATTCTTGTTGTTGT  1098

seq1  CTCTCCTCTGTTCCATTTTTCCTGAGCCTTGGAAAATTTTAGCAGAAGAA  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGTTCCATTTTTCCTGAGCCTTGGAAAATTTTAGCAGAAGAA  1148

seq1  TTC  1134
      |||
seq2  TTC  1151

seq1: chr6_35001953_35003037
seq2: B6Ng01-259F08.g_68_1150

seq1  GAATTCATGCCATCTTTCAGACTAAAAAGAAAATGTAAGTGAGTAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCATCTTTCAGACTAAAAAGAAAATGTAAGTGAGTAAAAAG  50

seq1  AGAAGTGGTGTGCTCGCTGCTTTCTAATCCCAAATGCTCTGCTTGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGTGTGCTCGCTGCTTTCTAATCCCAAATGCTCTGCTTGGCCAT  100

seq1  TCACTCAACACCAAGATTGGCTGACACCTCTGAAACCAGCAAGACAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAACACCAAGATTGGCTGACACCTCTGAAACCAGCAAGACAAAGA  150

seq1  TGGAAAGTCACGCCTCTTCAAGGAAGAGAATGTAAGCCATTCTCACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTCACGCCTCTTCAAGGAAGAGAATGTAAGCCATTCTCACATCT  200

seq1  TCCCTGAGTCTAGTTTCATCTGAATGTGATGTAGTAAAAAGATGCCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGTCTAGTTTCATCTGAATGTGATGTAGTAAAAAGATGCCAAAG  250

seq1  TGCCTGAATGTGACTGACATTGTGCTTTGGGTATTAGTTAAAATAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAATGTGACTGACATTGTGCTTTGGGTATTAGTTAAAATAAAATT  300

seq1  TCCAAAAGGTAAAATCATAAATTTTATATAAATATAAACCATGGTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGGTAAAATCATAAATTTTATATAAATATAAACCATGGTAAAAA  350

seq1  TATTTAAATAAATGGAGCAAAATTTAGTTTTTACTACTAAAGAAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATAAATGGAGCAAAATTTAGTTTTTACTACTAAAGAAATTCCT  400

seq1  TATTTGTCAATTAGGGAGAAGATCTTAAAATTGATTATGTAAACATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAATTAGGGAGAAGATCTTAAAATTGATTATGTAAACATAAAT  450

seq1  CTGACTTTAAAAATTAAGTCCTCAGTTTCTCTAAGATCAATAATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTAAAAATTAAGTCCTCAGTTTCTCTAAGATCAATAATCTTTTT  500

seq1  GGTTTTTTTTTCTTTTGGATTTTTCTTTGAGATAGGGTTTCTCTGTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTCTTTTGGATTTTTCTTTGAGATAGGGTTTCTCTGTAGAC  550

seq1  CCTGGCTGTCCTGGCACTCCCTTTGCAGATGAAGCTAGATTTGTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGCACTCCCTTTGCAGATGAAGCTAGATTTGTCTGCCT  600

seq1  CTCCTGAGATTACAGGCATGTGCCACCAAGCCCAGCCAGAACAGTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGATTACAGGCATGTGCCACCAAGCCCAGCCAGAACAGTGAGAT  650

seq1  TTTATTTGAGAAACAATGACAAATGATTTCTAGAGAAATCTGTTTTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAGAAACAATGACAAATGATTTCTAGAGAAATCTGTTTTCTAA  700

seq1  CACAGTAATTTCTAGGCAACACAACGACTTGCATACTATCTAATTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAATTTCTAGGCAACACAACGACTTGCATACTATCTAATTCCATG  750

seq1  TAGTTTAAATAATTTCCGTG-TTTTTTTTTTAAAGGGAGCTGAGAGAAAA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGTTTAAATAATTTCCGTGTTTTTTTTTTTAAAGGGAGCTGAGAGAAAA  800

seq1  GAAGATAGAAGTCTATCAACTAAAGCGTAGCCCATAAGTCTGTCAGC-TT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGATAGAAGTCTATCAACTAAAGCGTAGCCCATAAGTCTGTCAGCTTT  850

seq1  CTAAGAGTCTGACACTAACACTAGGCATTGCTGTTGCATACCTGATGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTCTGACACTAACACTAGGCATTGCTGTTGCATACCTGATGTGA  900

seq1  AGAGGCTCTGTGGTTCTGGAGCTGTAGGCCAATCACTGGGTGTCTGTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTGTGGTTCTGGAGCTGTAGGCCAATCACTGGGTGTCTGTGGA  950

seq1  GAGCTGGGAAAAGGAGGAAGCCCACTTGGTATAGGG-TTGGGGTGGCGAA  997
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCTGGGAAAAGGAGGAAGCCCACTTGGTATAGGGTTTGGGGTGGCGAA  1000

seq1  AATTGTCTGAGAATAATGACTGTGACTCTGTTACTGCCCCTTCAAAAGGA  1047
      |||||||||||||||||||||||||||||||||||||||||   ||| ||
seq2  AATTGTCTGAGAATAATGACTGTGACTCTGTTACTGCCCCT--CAAATGA  1048

seq1  GACCTCGCACTGTGATTGGATGAACTGATGGGGATGAC  1085
      ||||||||||||||||  |||| ||||||||| |||||
seq2  GACCTCGCACTGTGAT--GATG-ACTGATGGGAATGAC  1083