BAC Information

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BAC

Clone NameB6Ng01-259N05
Chromosome6 (Build37)
Map Location 11,267,874 - 11,269,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259N05.bB6Ng01-259N05.g
ACCGA064908GA064909
length1,1561,109
definitionB6Ng01-259N05.b B6Ng01-259N05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgagaaatactgaatgactgagaagcacctaaagaaatg
ttcaacatccttagtcatcaggaaaatgcaaatcaaaacaaccctgagat
tcaaccttacaccagtcagagtggctaagataaaaaactcaggtgacagc
agatgctggaaaggatgtggagaaagagaaatagtccttcattgttgatg
ggattgcaagcttgtacaaccactctggaagtcagtttggaggttcctca
gaagaattgtacatattattacctgagaatccagctataccactcctggg
catattccaaaaatattcttaaacatataacaaggacatatgatctacta
tgttcatagcagacttatttataatagccagaagctggaaacaacccaga
tattcatcagcagaggaatggatacagaaaatgtggtacatttacacaat
gaagtactactcagttattaaacacaatgaattcatgaaatgcttcagca
aatggattgagctagaaaatatcatcctgagtgagagaacacaataacaa
agaacacacatgatatgcactcactgataagtgaatattaacccaaaagc
ttgaaatacccaagatacaattcacagaccacatggtgctcaagaaggaa
gaccaaagtatgggtgctttggtccttcttagaagggaaaacaaaatact
catgggagcaaatatggagacaaattatatagcagaaaccgaaggaaagg
ccatgcagagactgccgcacctttggatccatcccatatacagtcaccaa
acccagacattattgtggatgccgagaaggtcatgctgacaagagcctga
tacagctgcctccagagaggctctgccagagcctgacaaatacagaggca
gatgctcacagccaaacattggacagagcactgggtccccattgaaagga
attagagaaaggactggaggagctgaggggtttgcaaccacataggagaa
caaaatatcaaccaacaagatccctgagagcttcccagagactaaaccac
gatcaagagaacacatggagtgatcacagctcactgcatatgtagcagaa
gatgccttgtcatcaatgggagaacctggtggtgtgagggtaggctaaaa
gggtat

gaattccatgtgctaaatcaatggttcttcgtatttgtaattttgctact
gctataattatgaagcatcattgataataattttatggttgtgggtaaca
aaaccatgagtaactgtaagggtcacagcattaggaaggtggagaaccac
taagcttaaagaagatctctgtcatgagttttccaacatgaaagcacaga
gtgtttgggaaaattgtataattcaaagaataaaacaaacaggccttaac
tataaagtctaaaagtgttgtagatatgacttagactttggctttgaaat
atatgtgtaattaaattgagaagtatttcactaatattttttataaatat
caaaagttgattcttctctgatagaaaaccagagttagaatgccaatagg
agtattttggccttcagactctctggctatgtggcttggttctttacagc
atggtgctaatgagggtaagttcagggattggagcccctgtgtggcttaa
ttaacttcatactgaggaaaatctctgttctggatcctgagctactgtct
aactcttgccagctgtattaccaatgcatgtaacttatacaaagtgatag
aacattcattatccgtaaatatctgttaaagcaatgaataactaccaata
ttgactccaaattattatttaatttgcaaatacttatttttctgaaacta
catctttaacaatatttgactatacaaagatgtgtaatatcttaggaaga
acccaacttaaaaacaaaaacaaaaaaaacaaagcctcagtttccactag
gaaagataaaggaaatgctagatatttttacagcatctctccttatgttg
atattgctgacatttctttattttatgagttttgtgcattaagaattact
atgaagagccgggcatggtggcgcacgcctttaatcccagcacttgggag
gcagaggcaagtgtatttctgagtctacagagtgagttccaggacagcca
ggctacacagagaaaccctgtctcgaaaccaaaaaccaaaaaactaaaac
caaacaaaaccaaaacctaaaaccaaacaaacacaccaccaaaatccccc
cccaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11267874_11269008
seq2: B6Ng01-259N05.g_67_1175 (reverse)

seq1  TTTTTGGGGGGGGGATTTTTTGTTGTTGTTGTTTTTGTTTTTTTGGTTTT  50
      ||||| |||||||||||     ||| || ||    ||||| |||||  ||
seq2  TTTTTTGGGGGGGGATT-----TTGGTGGTG----TGTTTGTTTGG--TT  39

seq1  TTAGTTTTTTGTTTTTTTGTTTTTTTGGTTTTTTGTTTTTTTTGGTTTTT  100
      |||| |||| ||       ||| |||||||||     |||||||||||||
seq2  TTAGGTTTTGGT-------TTTGTTTGGTTTT---AGTTTTTTGGTTTTT  79

seq1  TGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  150
       |   |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GG---TTTCGAGACAGGGTTTCTCTGTGTAG-CCTGGCTGTCCTGGAACT  125

seq1  CACTCTGTAGACTCAGAAATACACTTGCCTCTGCCTCCCAAGTGCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGACTCAGAAATACACTTGCCTCTGCCTCCCAAGTGCTGGGA  175

seq1  TTAAAGGCGTGCGCCACCATGCCCGGCTCTTCATAGTAATTCTTAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCGCCACCATGCCCGGCTCTTCATAGTAATTCTTAATGCA  225

seq1  CAAAACTCATAAAATAAAGAAATGTCAGCAATATCAACATAAGGAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCATAAAATAAAGAAATGTCAGCAATATCAACATAAGGAGAGAT  275

seq1  GCTGTAAAAATATCTAGCATTTCCTTTATCTTTCCTAGTGGAAACCTGAG  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTGTAAAAATATCTAGCATTTCCTTTATCTTTCCTAGTGGAAA-CTGAG  324

seq1  GCTTTGTTTTTTTTGTTTTTGTTTTTAAGTTGGGTTCTTCCTAAGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTTTTTTGTTTTTGTTTTTAAGTTGGGTTCTTCCTAAGATATT  374

seq1  ACACATCTTTGTATAGTCAAATATTGTTAAAGATGTAGTTTCAGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTTTGTATAGTCAAATATTGTTAAAGATGTAGTTTCAGAAAAAT  424

seq1  AAGTATTTGCAAATTAAATAATAATTTGGAGTCAATATTGGTAGTTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGCAAATTAAATAATAATTTGGAGTCAATATTGGTAGTTATTC  474

seq1  ATTGCTTTAACAGATATTTACGGATAATGAATGTTCTATCACTTTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAACAGATATTTACGGATAATGAATGTTCTATCACTTTGTATA  524

seq1  AGTTACATGCATTGGTAATACAGCTGGCAAGAGTTAGACAGTAGCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATGCATTGGTAATACAGCTGGCAAGAGTTAGACAGTAGCTCAGG  574

seq1  ATCCAGAACAGAGATTTTCCTCAGTATGAAGTTAATTAAGCCACACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAACAGAGATTTTCCTCAGTATGAAGTTAATTAAGCCACACAGGG  624

seq1  GCTCCAATCCCTGAACTTACCCTCATTAGCACCATGCTGTAAAGAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATCCCTGAACTTACCCTCATTAGCACCATGCTGTAAAGAACCAA  674

seq1  GCCACATAGCCAGAGAGTCTGAAGGCCAAAATACTCCTATTGGCATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATAGCCAGAGAGTCTGAAGGCCAAAATACTCCTATTGGCATTCTA  724

seq1  ACTCTGGTTTTCTATCAGAGAAGAATCAACTTTTGATATTTATAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTTTTCTATCAGAGAAGAATCAACTTTTGATATTTATAAAAAAT  774

seq1  ATTAGTGAAATACTTCTCAATTTAATTACACATATATTTCAAAGCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAAATACTTCTCAATTTAATTACACATATATTTCAAAGCCAAAG  824

seq1  TCTAAGTCATATCTACAACACTTTTAGACTTTATAGTTAAGGCCTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCATATCTACAACACTTTTAGACTTTATAGTTAAGGCCTGTTTG  874

seq1  TTTTATTCTTTGAATTATACAATTTTCCCAAACACTCTGTGCTTTCATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTTGAATTATACAATTTTCCCAAACACTCTGTGCTTTCATGT  924

seq1  TGGAAAACTCATGACAGAGATCTTCTTTAAGCTTAGTGGTTCTCCACCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTCATGACAGAGATCTTCTTTAAGCTTAGTGGTTCTCCACCTT  974

seq1  CCTAATGCTGTGACCCTTACAGTTACTCATGGTTTTGTTACCCACAACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCTGTGACCCTTACAGTTACTCATGGTTTTGTTACCCACAACCA  1024

seq1  TAAAATTATTATCAATGATGCTTCATAATTATAGCAGTAGCAAAATTACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTATCAATGATGCTTCATAATTATAGCAGTAGCAAAATTACA  1074

seq1  AATACGAAGAACCATTGATTTAGCACATGGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  AATACGAAGAACCATTGATTTAGCACATGGAATTC  1109


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