BAC Information

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BAC

Clone NameB6Ng01-259N21
Chromosome6 (Build37)
Map Location 18,085,738 - 18,228,063
singlet/doubletdoublet
Overlap geneLOC386426, LOC636450, LOC100040751, Cftr
Upstream geneEG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2, Asz1
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259N21.bB6Ng01-259N21.g
ACCGA064940GA064941
length1,1041,100
definitionB6Ng01-259N21.b B6Ng01-259N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,226,942 - 18,228,063)(18,085,738 - 18,086,846)
sequence
gaattcactaaatttatgactattaaacattgctgttcttcataaaactt
attcactagccaggacttcaactagtatgtggaaaattagcaacaaattc
acttgcttccttttgaaattattcacaaaactttatggcaaatagaaaaa
cttgataatagttattctttacaaacctgaatgaagtcaaaaatggtaag
aggcagaaagtcatccaaaattgctatatctttggagaatctgttaagaa
tcccacctgtgatacaaataaatattctcaaatattaatcacttttagaa
ggacaccaatatattttatcctaaattcacagcacagcaaaatcatttaa
aataagaattatcatctagtcagaaattcaagaacttacaaatattagct
ttgttgagaattctatgtatttatttaagttattgcctcctacttttgaa
cttttataaaacacatagtcccctacgactcagctccaagcagtgtcttt
aatcaagttcttactataattaagggtaggaatgtctggtcatcgtaccc
cttgggcctcacttctgctgctctcggtttcaaggtgtcttaatggcggt
gctttcatcaattttttatgttcaactccaccaaacagggcacatacacc
ctccctgtggagttttctgccatttagatatgctgatccaaaacccacag
ctgtctctctcagtacacaccagacttccttttttattttgtctatcttc
ttcactgggaatataagcttcaacctgtattctaaattccagattcaccc
catttgagtcttgattgttgtgtcaatgaactaaaaattccatgtctact
acatgctttggtaatgctggctacagggaggtgattaagtcattctcctt
gtagtgcaggaattcatcttctaaaaaggagctaagcccaacagataaag
tgtaacacaacactatggcacaatgtaatagtgaccttatcactcgttca
ctatacctactggattaagtcaaaatctttatatttatagttccaataat
ttgtctactactagatctgctatcaaacccactgcttctgttagttgtct
tctt
gaattcacttatggatagatttatatgactcttttcttctgttttaataa
agccattagctatttttgtagtttgagtactacatatcttaaaaataatt
gaaagtaactcaaatgacacacaatcaattatcttttctttttggcaata
agtgctccacaggaaggcttaagtactgttgtagggatatagtaaaatgt
tttctcttgcaacattaaggttgtttcatcaacaataagacatcgtttcc
tgaacattaggtggtacaattacctacgtcatccaacagatcagcttagc
tttcaagtaaacattttcaatcataggtgaaggtacaacgtggatttttg
cttttttttcttctatttttttttttttttggtgtaaatgagatgctact
gtttgggattagagaaaatgctatattttctctattcctgggaggataaa
tttttattctgctcattctacctactgtgagtatctgctttcctttctta
ctgagaattttatctttaagactcttctttttaaaggacaaaaagttact
tacagaatcacagctggatagcaggtgctttgttttagttactatgacaa
agtcagatattttaggtgagtccatttattgaactaaagtcatacgaaat
gtagctgagaattcattctttaataggaggaaaaactagaaagcattctt
agagttgctaattctattcttcttgtattcaataagaaaagaatacattt
agcttaggtgagtcatgaacttcactgtatgtattgagcagtaggagaaa
ttagcctatcatttagttctcttagaataaatgcttcctggtacagtaaa
ctggggttggatttctgatgtgtaacttaaatgtgctagtataagatatt
tttaaaataagagaaacaagctgggatgagaaaaaaattttttacctttg
ttgaaaaagcctcttgctcttaaaagagaatttttattattgaccggaaa
tacgtctcccatgcatatactgaagatgagcttatatagctcggaccagg
tgtgaactgaggaggatcttgagactggtgaacagaaatcttgttcagac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18226942_18228063
seq2: B6Ng01-259N21.b_48_1151 (reverse)

seq1  AAGAAGACATACTTACCAGAAGCAGTGGGTTTGAATAGCAGGATCTAGGT  50
      ||||||||| || || ||||||||||||||||| |||||| |||||||  
seq2  AAGAAGACA-AC-TAACAGAAGCAGTGGGTTTG-ATAGCA-GATCTAG--  44

seq1  TAGTTAAGGACAAATTATGGGAAACTATTAAATATTAAAGAATTTTGGAC  100
      ||||    |||||||||| || ||||| |||||| ||||||  ||| |||
seq2  TAGT---AGACAAATTATTGG-AACTA-TAAATA-TAAAGA--TTTTGAC  86

seq1  TTTAATCCAGTAGGTAATAGTGAACGAGTGATAAGGTTCACTATTACATT  150
       |||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  -TTAATCCAGTAGGT-ATAGTGAACGAGTGATAAGG-TCACTATTACATT  133

seq1  GTTGCCATAGTGTTGTGTTACACTTTATCTGTT-GGCTTAGCTCCTTTTT  199
      | ||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  G-TGCCATAGTGTTGTGTTACACTTTATCTGTTGGGCTTAGCTCC-TTTT  181

seq1  TAGAAGATGAATTCCTGCACTACAAGGAGAATGACTTAATCACCTCCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGAATTCCTGCACTACAAGGAGAATGACTTAATCACCTCCCTG  231

seq1  TAGCCAGCATTACCAAAGCATGTAGTAGACATGGAATTTTTAGTTCATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGCATTACCAAAGCATGTAGTAGACATGGAATTTTTAGTTCATTG  281

seq1  ACACAACAATCAAGACTCAAATGGGGTGAATCTGGAATTTAGAATACAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACAATCAAGACTCAAATGGGGTGAATCTGGAATTTAGAATACAGG  331

seq1  TTGAAGCTTATATTCCCAGTGAAGAAGATAGACAAAATAAAAAAGGAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTTATATTCCCAGTGAAGAAGATAGACAAAATAAAAAAGGAAGT  381

seq1  CTGGTGTGTACTGAGAGAGACAGCTGTGGGTTTTGGATCAGCATATCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTACTGAGAGAGACAGCTGTGGGTTTTGGATCAGCATATCTAA  431

seq1  ATGGCAGAAAACTCCACAGGGAGGGTGTATGTGCCCTGTTTGGTGGAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAAAACTCCACAGGGAGGGTGTATGTGCCCTGTTTGGTGGAGTT  481

seq1  GAACATAAAAAATTGATGAAAGCACCGCCATTAAGACACCTTGAAACCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAAAAATTGATGAAAGCACCGCCATTAAGACACCTTGAAACCGA  531

seq1  GAGCAGCAGAAGTGAGGCCCAAGGGGTACGATGACCAGACATTCCTACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGAAGTGAGGCCCAAGGGGTACGATGACCAGACATTCCTACCC  581

seq1  TTAATTATAGTAAGAACTTGATTAAAGACACTGCTTGGAGCTGAGTCGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATAGTAAGAACTTGATTAAAGACACTGCTTGGAGCTGAGTCGTA  631

seq1  GGGGACTATGTGTTTTATAAAAGTTCAAAAGTAGGAGGCAATAACTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTATGTGTTTTATAAAAGTTCAAAAGTAGGAGGCAATAACTTAAA  681

seq1  TAAATACATAGAATTCTCAACAAAGCTAATATTTGTAAGTTCTTGAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATAGAATTCTCAACAAAGCTAATATTTGTAAGTTCTTGAATTT  731

seq1  CTGACTAGATGATAATTCTTATTTTAAATGATTTTGCTGTGCTGTGAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGATGATAATTCTTATTTTAAATGATTTTGCTGTGCTGTGAATT  781

seq1  TAGGATAAAATATATTGGTGTCCTTCTAAAAGTGATTAATATTTGAGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAAATATATTGGTGTCCTTCTAAAAGTGATTAATATTTGAGAAT  831

seq1  ATTTATTTGTATCACAGGTGGGATTCTTAACAGATTCTCCAAAGATATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTATCACAGGTGGGATTCTTAACAGATTCTCCAAAGATATAG  881

seq1  CAATTTTGGATGACTTTCTGCCTCTTACCATTTTTGACTTCATTCAGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGGATGACTTTCTGCCTCTTACCATTTTTGACTTCATTCAGGTT  931

seq1  TGTAAAGAATAACTATTATCAAGTTTTTCTATTTGCCATAAAGTTTTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAATAACTATTATCAAGTTTTTCTATTTGCCATAAAGTTTTGTG  981

seq1  AATAATTTCAAAAGGAAGCAAGTGAATTTGTTGCTAATTTTCCACATACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCAAAAGGAAGCAAGTGAATTTGTTGCTAATTTTCCACATACT  1031

seq1  AGTTGAAGTCCTGGCTAGTGAATAAGTTTTATGAAGAACAGCAATGTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGTCCTGGCTAGTGAATAAGTTTTATGAAGAACAGCAATGTTTA  1081

seq1  ATAGTCATAAATTTAGTGAATTC  1122
      |||||||||||||||||||||||
seq2  ATAGTCATAAATTTAGTGAATTC  1104

seq1: chr6_18085738_18086846
seq2: B6Ng01-259N21.g_66_1165

seq1  GAATTCACTTATGGATAGATTTATATGACTCTTTTCTTCTGTTTTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATGGATAGATTTATATGACTCTTTTCTTCTGTTTTAATAA  50

seq1  AGCCATTAGCTATTTTTGTAGTTTGAGTACTACATATCTTAAAAATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTAGCTATTTTTGTAGTTTGAGTACTACATATCTTAAAAATAATT  100

seq1  GAAAGTAACTCAAATGACACACAATCAATTATCTTTTCTTTTTGGCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAACTCAAATGACACACAATCAATTATCTTTTCTTTTTGGCAATA  150

seq1  AGTGCTCCACAGGAAGGCTTAAGTACTGTTGTAGGGATATAGTAAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCACAGGAAGGCTTAAGTACTGTTGTAGGGATATAGTAAAATGT  200

seq1  TTTCTCTTGCAACATTAAGGTTGTTTCATCAACAATAAGACATCGTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGCAACATTAAGGTTGTTTCATCAACAATAAGACATCGTTTCC  250

seq1  TGAACATTAGGTGGTACAATTACCTACGTCATCCAACAGATCAGCTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTAGGTGGTACAATTACCTACGTCATCCAACAGATCAGCTTAGC  300

seq1  TTTCAAGTAAACATTTTCAATCATAGGTGAAGGTACAACGTGGATTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTAAACATTTTCAATCATAGGTGAAGGTACAACGTGGATTTTTG  350

seq1  CTTTTTTTTCTTCTATTTTTTTTTTTTTTTGGTGTAAATGAGATGCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTCTTCTATTTTTTTTTTTTTTTGGTGTAAATGAGATGCTACT  400

seq1  GTTTGGGATTAGAGAAAATGCTATATTTTCTCTATTCCTGGGAGGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGATTAGAGAAAATGCTATATTTTCTCTATTCCTGGGAGGATAAA  450

seq1  TTTTTATTCTGCTCATTCTACCTACTGTGAGTATCTGCTTTCCTTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTGCTCATTCTACCTACTGTGAGTATCTGCTTTCCTTTCTTA  500

seq1  CTGAGAATTTTATCTTTAAGACTCTTCTTTTTAAAGGACAAAAAGTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTTTATCTTTAAGACTCTTCTTTTTAAAGGACAAAAAGTTACT  550

seq1  TACAGAATCACAGCTGGATAGCAGGTGCTTTGTTTTAGTTACTATGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATCACAGCTGGATAGCAGGTGCTTTGTTTTAGTTACTATGACAA  600

seq1  AGTCAGATATTTTAGGTGAGTCCATTTATTGAACTAAAGTCATACGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATATTTTAGGTGAGTCCATTTATTGAACTAAAGTCATACGAAAT  650

seq1  GTAGCTGAGAATTCATTCTTTAATAGGAGGAAAAACTAGAAAGCATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGAGAATTCATTCTTTAATAGGAGGAAAAACTAGAAAGCATTCTT  700

seq1  AGAGTTGCTAATTCTATTCTTCTTGTATTCAATAAGAAAAGAATACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCTAATTCTATTCTTCTTGTATTCAATAAGAAAAGAATACATTT  750

seq1  AGCTTAGGTGAGTCATGAACTTCACTGTATGTATTGAGCAGTAGGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGTGAGTCATGAACTTCACTGTATGTATTGAGCAGTAGGAGAAA  800

seq1  TTAGCCTATCATTTAGTTCTCTTAGAATAAATGCTTCCTGGTACAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTATCATTTAGTTCTCTTAGAATAAATGCTTCCTGGTACAGTAAA  850

seq1  CTGGGGTTGGATTTCTGATGTGTAACTTAAATGTGCTAGTATAAGATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTGGATTTCTGATGTGTAACTTAAATGTGCTAGTATAAGATATT  900

seq1  TTTAAAATAAGAGAAACAAGCT-GGATGAGAAAAAAATTTTTTACCTTTG  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTAAAATAAGAGAAACAAGCTGGGATGAGAAAAAAATTTTTTACCTTTG  950

seq1  TTGAAAAAGCCTCTTGCTCTTAAAAGAGAATTTTTAATTATTGACCGGAA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGAAAAAGCCTCTTGCTCTTAAAAGAGAATTTTT-ATTATTGACCGGAA  999

seq1  ATACGTCTCCCCATGGCATATACTGAAGATGAGCTTATATAGCTCGGGAC  1049
      |||||||| ||||| |||||||||||||||||||||||||||||| ||||
seq2  ATACGTCT-CCCAT-GCATATACTGAAGATGAGCTTATATAGCTC-GGAC  1046

seq1  ACAGGTGTGAACTTGAGGAGGGATCTTGAAGACTGGGTGAACAGGAAATC  1099
       ||||||||||| |||||| |||||||| ||||| |||||||| ||||||
seq2  -CAGGTGTGAAC-TGAGGA-GGATCTTG-AGACT-GGTGAACA-GAAATC  1090

seq1  TTGGTCAGAC  1109
      ||| ||||||
seq2  TTGTTCAGAC  1100