BAC Information

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BAC

Clone NameB6Ng01-259O16
Chromosome6 (Build37)
Map Location 67,975,329 - 67,976,522
singlet/doubletsinglet
Overlap geneIgk
Upstream geneGadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122
Downstream geneEG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259O16.bB6Ng01-259O16.g
ACCGA064976GA064977
length1,1881,216
definitionB6Ng01-259O16.b B6Ng01-259O16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagggcacatcatggaaaagaggtcctctgttcagcttctaggtt
gatactggtctagatcacaagtaagaaagaacaatattgaggacttactt
agagcactgtgatgaatgttgcttggttctttgagagtgtttttcctgta
atatacagaatataacacaattgttctgtttctgttccctgggctgagtt
gtgacatccaaatgatccaatctgtctgcatcattcctgtctgcatctct
aggaaaccatcagctgcaaggccagtaacaatattaataaaatgagtgct
cagctcgattgtaacagacaacagagagggctcctaggattctgatcaat
tatacattacattttctaattggggttctagtataattcagtggcagtgg
ctctggtaaagattattctcacactgtctgcaacctagattctgacaata
ttgctatatattactgtacaatgaacatccaccagcagtgacacaaaaca
taacataaaccccaaggagagacaaaagataaggctatgtcagctgccct
tctgtgtgtctctaacagctgagagcatttgtgagatgtcctttgattta
aaaagtttctcaatattttgtaaaaataaacaagaatgctctttgcagcc
taatcatccttagcatcaaccataagcagaaatatgcctcttcttagatc
ttatgtgcagaggtaatggcacctgaaacacctgagttatatcattgaga
tccaagggtcaaaattgaagatgctacagattatataagcaggatttttt
actttgaaaaattatactataggaataaactgcactacactaaactgact
gtaatagagaacaaatggtcacagagatgcatagtagcattgggagccta
ctcttttctttttcctattttttattggctattttcttcatttacatttc
aaatgttatcccacttcccattttcccatctgcaatcccccattgtgggg
agcgggtgtgcggcagtcccaaagcgccagggactgcagctaagtcatat
gactgtactgactctcaatataagacacaaacattctggagtgctgcgca
ggtgtaccaaggataacagggtgatcattggtggagattggcccctgctg
gctgatagctgagcttctgactggccaaggagggcgtg
gaattccattgtgaaacttgaatctgtgtgaatagagacctacaggatct
aaagaaaatgcaccactagatagtcacacagaaccatgcaatcttttcaa
taaccttgaaaaaataaagattaaaaatttaaaaaaaagcttgttgtgga
agcaacagtttgttatagtgcatcatacagtatatacttttgtctataca
tctttacctgcaaatgttcactgcattgagtcattagtctggttcaaggc
ctctggcttttgctatactatcaatacttgttcctcactaggactctact
cagatattctgttgttacttatatcatagagctcttgcacctttggatca
ggaggaatagtcccttcatgcactccagcagttctgagatagagacgata
ttagggtgggcctggttcaagacctgattggtagctgaattgctctatct
gtcaggttttctgtacccatagggccaggatgaacttcccagcactggtt
agatcatccattcattgccttagaagcaaagactgggaacaactgtcttg
ctttcatgcccaaagggcgagctaagctatactcacaccattaggcaacc
tggaggacctatttcttgagtgctgaagctggtgatgaatgggatgagca
ctctggttctcacgatcttggagccagctctctcatctgctaaagttgtc
aatgggcaataggaaaaagtctgactcgctttttttattggatatttttg
ttatttgtagttcaaatgttatccccattccaggtcaaacaatccctgga
aaatgcccaacccacctcccccctccgccccccccccacacggcttctat
gagcttgttctcccacctactttacctactgtgatggttatctaatcctt
gggccagggagtggcaccattttggagtgtgaccttggttggagtatgtg
tattcacctgtggggtgtggggtataagttcctcaccccagctgccctgg
aaagtcagtctttccactaaggaatcctttggatgaagaacataagaact
ggtcgcttcctcctggacctatacctggctggtggcttcaaatcttgaaa
tgtgtatgggaacttgaaccttctgatactgtgaagtcagccctattaat
gtttgtctttccatagcagcttgtcccttgtcactcgcgctctctccgtg
atttcacggggataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67975329_67976522
seq2: B6Ng01-259O16.b_48_1235

seq1  GAATTCAGGGCACATCATGGAAAAGAGGTCCTCTGTTCAGCTTCTAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCACATCATGGAAAAGAGGTCCTCTGTTCAGCTTCTAGGTT  50

seq1  GATACTGGTCTAGATCACAAGTAAGAAAGAACAATATTGAGGACTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGTCTAGATCACAAGTAAGAAAGAACAATATTGAGGACTTACTT  100

seq1  AGAGCACTGTGATGAATGTTGCTTGGTTCTTTGAGAGTGTTTTTCCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGTGATGAATGTTGCTTGGTTCTTTGAGAGTGTTTTTCCTGTA  150

seq1  ATATACAGAATATAACACAATTGTTCTGTTTCTGTTCCCTGGGCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGAATATAACACAATTGTTCTGTTTCTGTTCCCTGGGCTGAGTT  200

seq1  GTGACATCCAAATGATCCAATCTGTCTGCATCATTCCTGTCTGCATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCCAAATGATCCAATCTGTCTGCATCATTCCTGTCTGCATCTCT  250

seq1  AGGAAACCATCAGCTGCAAGGCCAGTAACAATATTAATAAAATGAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCATCAGCTGCAAGGCCAGTAACAATATTAATAAAATGAGTGCT  300

seq1  CAGCTCGATTGTAACAGACAACAGAGAGGGCTCCTAGGATTCTGATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGATTGTAACAGACAACAGAGAGGGCTCCTAGGATTCTGATCAAT  350

seq1  TATACATTACATTTTCTAATTGGGGTTCTAGTATAATTCAGTGGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTACATTTTCTAATTGGGGTTCTAGTATAATTCAGTGGCAGTGG  400

seq1  CTCTGGTAAAGATTATTCTCACACTGTCTGCAACCTAGATTCTGACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAAAGATTATTCTCACACTGTCTGCAACCTAGATTCTGACAATA  450

seq1  TTGCTATATATTACTGTACAATGAACATCCACCAGCAGTGACACAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATATATTACTGTACAATGAACATCCACCAGCAGTGACACAAAACA  500

seq1  TAACATAAACCCCAAGGAGAGACAAAAGATAAGGCTATGTCAGCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAACCCCAAGGAGAGACAAAAGATAAGGCTATGTCAGCTGCCCT  550

seq1  TCTGTGTGTCTCTAACAGCTGAGAGCATTTGTGAGATGTCCTTTGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTCTCTAACAGCTGAGAGCATTTGTGAGATGTCCTTTGATTTA  600

seq1  AAAAGTTTCTCAATATTTTGTAAAAATAAACAAGAATGCTCTTTGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCTCAATATTTTGTAAAAATAAACAAGAATGCTCTTTGCAGCC  650

seq1  TAATCATCCTTAGCATCAACCATAAGCAGAAATATGCCTCTTCTTAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCCTTAGCATCAACCATAAGCAGAAATATGCCTCTTCTTAGATC  700

seq1  TTATGTGCAGAGGTAATGGCACCTGAAACACCTGAGTTATATCATTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCAGAGGTAATGGCACCTGAAACACCTGAGTTATATCATTGAGA  750

seq1  TCCAAGGGTCAAAATTGAAGATGCTACAGATTATATAAGCAGGATTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGTCAAAATTGAAGATGCTACAGATTATATAAGCAGGATTTTTT  800

seq1  ACTTTGAAAAATTATACTATAGGAATAAACTGCACTACACTAAACTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAAATTATACTATAGGAATAAACTGCACTACACTAAACTGACT  850

seq1  GTAATAGAGAACAAATGGTCACAGAGATGCATAGTAGCATT-GGAGCCTA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTAATAGAGAACAAATGGTCACAGAGATGCATAGTAGCATTGGGAGCCTA  900

seq1  CTCTTTTCTTTTTCCTATTTTTTATTGGCTATTTTCTTCATTTACATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTTTTCCTATTTTTTATTGGCTATTTTCTTCATTTACATTTC  950

seq1  AAATGTTATCCCACTTCCCATTTTCCCATCTGCAATCCCCCATTGTGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATCCCACTTCCCATTTTCCCATCTGCAATCCCCCATTGTGGGG  1000

seq1  AGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGGGACTGCAGCTAAGTCAT  1049
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AGCGGGTGT-GCGGCAGTCCCAAA-GCGCCAGGGACTGCAGCTAAGTCAT  1048

seq1  ATGACTTGTACCTGACTTCCTC-ATATAAGACACAAACA-TCTTGAGTGC  1097
      ||||| |||| ||||||  ||| |||||||||||||||| ||| ||||||
seq2  ATGAC-TGTA-CTGACT--CTCAATATAAGACACAAACATTCTGGAGTGC  1094

seq1  TGCGCAGGTGTACC-AGGAT-ACAGGTGAATCCAATTTGGTGGAGATTTG  1145
      |||||||||||||| ||||| |||||   |||    |||||||||||| |
seq2  TGCGCAGGTGTACCAAGGATAACAGGGTGATC---ATTGGTGGAGATTGG  1141

seq1  CCCCTGCTGCCCTGATTAGCTGAAGCCTCGTGACTGG-CAAGG-GGGCGT  1193
      |||||||||  |||| |||||| ||| || ||||||| ||||| ||||||
seq2  CCCCTGCTG-GCTGA-TAGCTG-AGCTTC-TGACTGGCCAAGGAGGGCGT  1187

seq1  G  1194
      |
seq2  G  1188