BAC Information

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BAC

Clone NameB6Ng01-259P05
Chromosome6 (Build37)
Map Location 18,227,149 - 18,376,692
singlet/doubletdoublet
Overlap geneCftr, Cttnbp2
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259P05.bB6Ng01-259P05.g
ACCGA065000GA065001
length1,1581,110
definitionB6Ng01-259P05.b B6Ng01-259P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,375,540 - 18,376,692)(18,227,149 - 18,228,272)
sequence
gaattcaaaaggcactgggggaattttcttcactgtagagaaattaaatt
tagatcattcagtattatttatgaaagttctgtgttagtgatgtttgtgt
ctcaggtggctttctgtgggctttccttgatcttcaagtagccaagtgta
ggatggcccacatagaagtactttgatgattagattagcattaatcattc
agtaagaatgtaactatataaatacagtttggtaaacagatctgattgtc
tgccccaaaacattcttttgaagaaaatcaggcctagaacctagcaaagt
atttttccggtacatggtattctttttttaacccatcaacaactctactg
gaaatatttttttaaaaccatgtcttggtggctgtggagatatcctgtct
tcaggaaaagagatggctctccatgtgaaagtctgtggcatgccacatcc
agcaggacagagcggtcaggtcagcctttgctgctagattctctgcacag
cttagagggaacctggctcatcattgcactgagtgaccttctgttaaaat
cctgtagactgtgtgcgattgctgctgaatgcagaagcccgagtcgacgc
tgctgataaaaatggcttcacacccttgtgcgtcgcagctgctcagggac
attttgagtaagtgatgctcttcattcttcttttcctatggaagtggacc
cctttttaatatttggcacagagttcactcctgctaagtatgtaaatgag
tggttaatagtcattgagaaatccaccaaacatatttgagtgttcaaatg
caaagaaaggaccttagatttgttctcataataatagttaagtgctgtat
ctaaagcaagtgtgtatatgtctagtctgtatataatctgtacatagatg
tatacaatctgatctatccatcaatgaacttgcttctggaaaagctcaac
attagtatagcaatggagaaccaaagtaaggtggtgctgagagctttgtc
tgctttctctttttctaataaaggcttttgttagtgctaacattaactta
gacgtagaatattatttgtttactaaatcccgtttatttctacaagtaag
taagtaatttgatagtccaaattgcctcctgtttccttcatcacagttag
agaaaaat
gaattcctgcactacaaggagaatgacttaatcacctccctgtagccagc
attaccaaagcatgtagtagacatggaatttttagttcattgacacaaca
atcaagactcaaatggggtgaatctggaatttagaatacaggttgaagct
tatattcccagtgaagaagatagacaaaataaaaaaggaagtctggtgtg
tactgagagagacagctgtgggttttggatcagcatatctaaatggcaga
aaactccacagggagggtgtatgtgccctgtttggtggagttgaacataa
aaaattgatgaaagcaccgccattaagacaccttgaaaccgagagcagca
gaagtgaggcccaaggggtacgatgaccagacattcctacccttaattat
agtaagaacttgattaaagacactgcttggagctgagtcgtaggggacta
tgtgttttataaaagttcaaaagtaggaggcaataacttaaataaataca
tagaattctcaacaaagctaatatttgtaagttcttgaatttctgactag
atgataattcttattttaaatgattttgctgtgctgtgaatttaggataa
aatatattggtgtccttctaaaagtgattaatatttgagaatatttattt
gtatcacaggtgggattcttaacagattctccaaagatatagcaattttg
gatgactttctgcctcttaccatttttgacttcattcaggtttgtaaaga
ataactattatcaagtttttctatttgccataaagttttgtgaataattt
caaaaggaagcaagtgaatttgttgctaattttccacatactagttgaag
tcctggctagtgaataagttttatgaagaacagcaatgtttaatagtcat
aaatttagtgaattcagtaactagctatgtctatctatttcaggcatgcc
ctggatatgatactatcctcttgaattggtttgaaaggtacaaagacagt
ttcggcccatcattgacataaatttgactcatagacatttcttagtcaca
ctgaaattgaatgagtctggagaggcttacccttctatcagccataccca
tgacacttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18375540_18376692
seq2: B6Ng01-259P05.b_46_1203 (reverse)

seq1  ATTTTTCTCTTAATTGTGAATGAA-GAAACAGGA-GCATTTGGGACTATC  48
      ||||||||| ||| |||| ||||| ||||||||| ||| || ||||||||
seq2  ATTTTTCTC-TAACTGTG-ATGAAGGAAACAGGAGGCAATTTGGACTATC  48

seq1  AAATAACTTACCTTAC-TGTAGAA--TAACGGGATTTTAGTAAAC-AATA  94
      |||| ||||| ||||| |||||||   ||||||| |||||||||| ||||
seq2  AAATTACTTA-CTTACTTGTAGAAATAAACGGGA-TTTAGTAAACAAATA  96

seq1  TAATTCTACGTTCTACCTTTAATGTTAGCACTAACAAAAGCCTTTA-TAG  143
        |||||||| ||||   |||||||||||||||||||||||||||| |||
seq2  ATATTCTACG-TCTA-AGTTAATGTTAGCACTAACAAAAGCCTTTATTAG  144

seq1  -AAAAGAGAAAGCAGACAAAGCTCTCAGCA-CACCTTACTTT-GTTCTCC  190
       ||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AAAAAGAGAAAGCAGACAAAGCTCTCAGCACCACCTTACTTTGGTTCTCC  194

seq1  ATTGCTATACTAATGTTGAGCTTTTCCAGAAGCAAGTTCATTGATGGATA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATACTAATGTTGAGCTTTTCCAGAAGCAAGTTCATTGATGGATA  244

seq1  GATCAGATTGTATACATCTATGTACAGATTATATACAGACTAGACATATA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATTGTATACATCTATGTACAGATTATATACAGACTAGACATATA  294

seq1  CACACTTGCTTTAGATACAGCACTTAACTATTATTATGAGAACAAATCTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGCTTTAGATACAGCACTTAACTATTATTATGAGAACAAATCTA  344

seq1  AGGTCC-TTCTTTGCATTTGAACACTCAAATATGTTTGGTGGATTTCTCA  389
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTTCTTTGCATTTGAACACTCAAATATGTTTGGTGGATTTCTCA  394

seq1  ATGACTATTAACCACTCATTTACATACTTAGCAGGAGTGAACTCTGTGCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATTAACCACTCATTTACATACTTAGCAGGAGTGAACTCTGTGCC  444

seq1  AAATATTAAAAAGGGGTCCACTTCCATAGGAAAAGAAGAATGAAGAGCAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAAAAGGGGTCCACTTCCATAGGAAAAGAAGAATGAAGAGCAT  494

seq1  CACTTACTCAAAATGTCCCTGAGCAGCTGCGACGCACAAGGGTGTGAAGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTCAAAATGTCCCTGAGCAGCTGCGACGCACAAGGGTGTGAAGC  544

seq1  CATTTTTATCAGCAGCGTCGACTCGGGCTTCTGCATTCAGCAGCAATCGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATCAGCAGCGTCGACTCGGGCTTCTGCATTCAGCAGCAATCGC  594

seq1  ACACAGTCTACAGGATTTTAACAGAAGGTCACTCAGTGCAATGATGAGCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCTACAGGATTTTAACAGAAGGTCACTCAGTGCAATGATGAGCC  644

seq1  AGGTTCCCTCTAAGCTGTGCAGAGAATCTAGCAGCAAAGGCTGACCTGAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTCTAAGCTGTGCAGAGAATCTAGCAGCAAAGGCTGACCTGAC  694

seq1  CGCTCTGTCCTGCTGGATGTGGCATGCCACAGACTTTCACATGGAGAGCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGTCCTGCTGGATGTGGCATGCCACAGACTTTCACATGGAGAGCC  744

seq1  ATCTCTTTTCCTGAAGACAGGATATCTCCACAGCCACCAAGACATGGTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTTCCTGAAGACAGGATATCTCCACAGCCACCAAGACATGGTTT  794

seq1  TAAAAAAATATTTCCAGTAGAGTTGTTGATGGGTTAAAAAAAGAATACCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATATTTCCAGTAGAGTTGTTGATGGGTTAAAAAAAGAATACCA  844

seq1  TGTACCGGAAAAATACTTTGCTAGGTTCTAGGCCTGATTTTCTTCAAAAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGGAAAAATACTTTGCTAGGTTCTAGGCCTGATTTTCTTCAAAAG  894

seq1  AATGTTTTGGGGCAGACAATCAGATCTGTTTACCAAACTGTATTTATATA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGGGGCAGACAATCAGATCTGTTTACCAAACTGTATTTATATA  944

seq1  GTTACATTCTTACTGAATGATTAATGCTAATCTAATCATCAAAGTACTTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTCTTACTGAATGATTAATGCTAATCTAATCATCAAAGTACTTC  994

seq1  TATGTGGGCCATCCTACACTTGGCTACTTGAAGATCAAGGAAAGCCCACA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGCCATCCTACACTTGGCTACTTGAAGATCAAGGAAAGCCCACA  1044

seq1  GAAAGCCACCTGAGACACAAACATCACTAACACAGAACTTTCATAAATAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCACCTGAGACACAAACATCACTAACACAGAACTTTCATAAATAA  1094

seq1  TACTGAATGATCTAAATTTAATTTCTCTACAGTGAAGAAAATTCCCCCAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATGATCTAAATTTAATTTCTCTACAGTGAAGAAAATTCCCCCAG  1144

seq1  TGCCTTTTGAATTC  1153
      ||||||||||||||
seq2  TGCCTTTTGAATTC  1158

seq1: chr6_18227149_18228272
seq2: B6Ng01-259P05.g_66_1175

seq1  GAATTCCTGCACTACAAGGAGAATGACTTAATCACCTCCCTGTAGCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCACTACAAGGAGAATGACTTAATCACCTCCCTGTAGCCAGC  50

seq1  ATTACCAAAGCATGTAGTAGACATGGAATTTTTAGTTCATTGACACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAAAGCATGTAGTAGACATGGAATTTTTAGTTCATTGACACAACA  100

seq1  ATCAAGACTCAAATGGGGTGAATCTGGAATTTAGAATACAGGTTGAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACTCAAATGGGGTGAATCTGGAATTTAGAATACAGGTTGAAGCT  150

seq1  TATATTCCCAGTGAAGAAGATAGACAAAATAAAAAAGGAAGTCTGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCCAGTGAAGAAGATAGACAAAATAAAAAAGGAAGTCTGGTGTG  200

seq1  TACTGAGAGAGACAGCTGTGGGTTTTGGATCAGCATATCTAAATGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGAGAGACAGCTGTGGGTTTTGGATCAGCATATCTAAATGGCAGA  250

seq1  AAACTCCACAGGGAGGGTGTATGTGCCCTGTTTGGTGGAGTTGAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCACAGGGAGGGTGTATGTGCCCTGTTTGGTGGAGTTGAACATAA  300

seq1  AAAATTGATGAAAGCACCGCCATTAAGACACCTTGAAACCGAGAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGATGAAAGCACCGCCATTAAGACACCTTGAAACCGAGAGCAGCA  350

seq1  GAAGTGAGGCCCAAGGGGTACGATGACCAGACATTCCTACCCTTAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGCCCAAGGGGTACGATGACCAGACATTCCTACCCTTAATTAT  400

seq1  AGTAAGAACTTGATTAAAGACACTGCTTGGAGCTGAGTCGTAGGGGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAACTTGATTAAAGACACTGCTTGGAGCTGAGTCGTAGGGGACTA  450

seq1  TGTGTTTTATAAAAGTTCAAAAGTAGGAGGCAATAACTTAAATAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTATAAAAGTTCAAAAGTAGGAGGCAATAACTTAAATAAATACA  500

seq1  TAGAATTCTCAACAAAGCTAATATTTGTAAGTTCTTGAATTTCTGACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCTCAACAAAGCTAATATTTGTAAGTTCTTGAATTTCTGACTAG  550

seq1  ATGATAATTCTTATTTTAAATGATTTTGCTGTGCTGTGAATTTAGGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATTCTTATTTTAAATGATTTTGCTGTGCTGTGAATTTAGGATAA  600

seq1  AATATATTGGTGTCCTTCTAAAAGTGATTAATATTTGAGAATATTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGGTGTCCTTCTAAAAGTGATTAATATTTGAGAATATTTATTT  650

seq1  GTATCACAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCAATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAGGTGGGATTCTTAACAGATTCTCCAAAGATATAGCAATTTTG  700

seq1  GATGACTTTCTGCCTCTTACCATTTTTGACTTCATTCAGGTTTGTAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTTCTGCCTCTTACCATTTTTGACTTCATTCAGGTTTGTAAAGA  750

seq1  ATAACTATTATCAAGTTTTTCTATTTGCCATAAAGTTTTGTGAATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATTATCAAGTTTTTCTATTTGCCATAAAGTTTTGTGAATAATTT  800

seq1  CAAAAGGAAGCAAGTGAATTTGTTGCTAATTTTCCACATACTAGTTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAGCAAGTGAATTTGTTGCTAATTTTCCACATACTAGTTGAAG  850

seq1  TCCTGGCTAGTGAATAAGTTTTATGAAGAACAGCAATGTTTAATAGTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTAGTGAATAAGTTTTATGAAGAACAGCAATGTTTAATAGTCAT  900

seq1  AAATTTAGTGAATTCAGTAACTAGCTATGTCTATCTATTTCAGGCATGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTGAATTCAGTAACTAGCTATGTCTATCTATTTCAGGCATGCC  950

seq1  CTGGATATGATACTATCCTCTTGAATTGGTTTGAAAGGTACAAAAGACAG  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGATATGATACTATCCTCTTGAATTGGTTTGAAAGGTAC-AAAGACAG  999

seq1  TTTTCCGCCCAATCATTGACCATAAAATTTGACTCATAGAACATTTCTTA  1050
      |||  || || |||||||| ||| ||||||||||||||| ||||||||| 
seq2  TTT--CGGCCCATCATTGA-CAT-AAATTTGACTCATAG-ACATTTCTT-  1043

seq1  AGTCCAACACTGAAATGAAAATGAAGTTCCTGGAGAGGC-TACACTCTAA  1099
      ||||  ||||||||||   |||| |||  |||||||||| ||| ||   |
seq2  AGTC--ACACTGAAAT-TGAATG-AGT--CTGGAGAGGCTTACCCTTCTA  1087

seq1  TCCAGCCATACCCATGAACACTTAA  1124
      | |||||||||||||| ||||||||
seq2  T-CAGCCATACCCATG-ACACTTAA  1110