BAC Information

Click to search

BAC

Clone NameB6Ng01-260K13
Chromosome6 (Build37)
Map Location 10,538,451 - 10,539,276
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264
Downstream geneLOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260K13.bB6Ng01-260K13.g
ACCGA065526GA065527
length1,1781,142
definitionB6Ng01-260K13.b B6Ng01-260K13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaagatagactccagaaaaccaaataaccctgattaaaaaat
ggggtacagagataaacaaagaattctcaactgaggaataatgaatggct
gagaagcacctaaaaatgttcaacatccttagtcatcccggaaatgcaaa
tcaaaacaaccctgagatctacctcataccagacataatggctaagatca
aagcatcaggtgacagcagatgctggtgaagaagctggaaagaacccaga
tgtccctcaacagaagaatggacacagaaaatgtcgtacatttacacaat
ggagtactatacaactattaaaaataatgaatttatgaaattcttagaca
catgaatggatctggaagatatcatcccgagtggggtaacccagtcacaa
aagaacatacatgatatgctctccctgataagtggatattaacccagaag
ctcagaatatccaaaattcaattcgcaaacacatgaaactcaagaaggaa
gaccaaaatgaggatactttggtccttcttagaagaggaacaaaataccc
atggaaagagttacagagacaaagtgtgatttagagactgaaggaatgac
cacccagaaactgccccacatgcagatacatcccataaactaccactaaa
actagatataatgcaaaatagcataccaacaagagcttgatgacaggagc
ctgatatagctgtctcctgagagtctctgacagtgccggacaaatacgga
agtggatgctcacagccatcaattgggcaggacacagcatccccagtgaa
ggagctagagaaagtattcaaggaattgaagggatctgcatccccataag
aggaaccatagtatgaactaacctgtatctccagagatccctgggactaa
atcaccaagcaaagaaaacacatggttggactcttggctctagctgcata
tgtagcagaggataggctaattgggttatcagtggtggagaggaccttgg
tcctgtgaaaagttctatgccccagtatagaggaatgccagaccaggagc
agatgatggctgttaaacacggaaagggatggattatgggtttccggtgg
gggtatgtacagagaaatcattctgaaatgtaatatatgaaaacatctat
taaataaaggatatattcctacctgaac

gaattctcacctgaggaataccgaatggctgagaagcatctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaaaatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggattacaagcttgtacaaccactctggaaatcagtctggtggttcctt
agaaaattggacatagtactactggaggatccaacaatacctctactggg
ctgtggagagccgtgccaagagcaatggctgtggagagcagtgcgtgccc
cgagcaatcgccatcataagatggcgctggcctccgctgtgcctaactag
taaacaagccttgtatgcaggcacgagagtgaactcactcttagtctctg
cccattctcggggcataatagtggggtgatgggcgagcaacaaatcacga
gctgacatgccatatcagatgctaaaacaccatggctaagggctatataa
gcgactccattttctggggtcggggtcttcctgagaagtaagcaataaag
ctttgctgcaggagtttctggttgtcctgagtgtgtttcttgctggcggg
gacaaaagctcgggatactgggcatatatccagaatatgtcccaaccagt
aagaaggacacatgctccactatgttcatagcagccttatttataatagc
cagaagctggaaagaacccagatgcccctcaacagaggaatggatacaga
aaatgtggtacatctaattaatttctgtagataatttagagcaaatgttt
ttaagtgttaggaaattataaatgaatacttttaattaatgcttatatta
catacgataaaagttgtttatgagagattttgaattctagtctgggttag
ctttgtcacatacatattctctattaactgcatctttcctggatagactg
aacttccaattatccacaagacacattgagtcctttccacaaaacaggaa
atggcagatttgacattctcaatagctgcagcacatgtcacagcctccct
aacttttttttcaaatcagcaaccgaatattttccaggtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10538451_10539276
seq2: B6Ng01-260K13.g_384_1206

seq1  GAGCAATGGCTGTGGAGAGCAGTGCGTGCCCCGAGCAATCGCCATCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGGCTGTGGAGAGCAGTGCGTGCCCCGAGCAATCGCCATCATAA  50

seq1  GATGGCGCTGGCCTCCGCTGTGCCTAACTAGTAAACAAGCCTTGTATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCTGGCCTCCGCTGTGCCTAACTAGTAAACAAGCCTTGTATGCA  100

seq1  GGCACGAGAGTGAACTCACTCTTAGTCTCTGCCCATTCTCGGGGCATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGAGAGTGAACTCACTCTTAGTCTCTGCCCATTCTCGGGGCATAAT  150

seq1  AGTGGGGTGATGGGCGAGCAACAAATCACGAGCTGACATGCCATATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTGATGGGCGAGCAACAAATCACGAGCTGACATGCCATATCAGA  200

seq1  TGCTAAAACACCATGGCTAAGGGCTATATAAGCGACTCCATTTTCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAACACCATGGCTAAGGGCTATATAAGCGACTCCATTTTCTGGGG  250

seq1  TCGGGGTCTTCCTGAGAAGTAAGCAATAAAGCTTTGCTGCAGGAGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTCTTCCTGAGAAGTAAGCAATAAAGCTTTGCTGCAGGAGTTTCT  300

seq1  GGTTGTCCTGAGTGTGTTTCTTGCTGGCGGGGACAAAAGCTCGGGATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCCTGAGTGTGTTTCTTGCTGGCGGGGACAAAAGCTCGGGATACT  350

seq1  GGGCATATATCCAGAATATGTCCCAACCAGTAAGAAGGACACATGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATATCCAGAATATGTCCCAACCAGTAAGAAGGACACATGCTCCA  400

seq1  CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC  450

seq1  AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAATT  500

seq1  AATTTCTGTAGATAATTTAGAGCAAATGTTTTTAAGTGTTAGGAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTAGATAATTTAGAGCAAATGTTTTTAAGTGTTAGGAAATTAT  550

seq1  AAATGAATACTTTTAATTAATGCTTATATTACATACGATAAAAGTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATACTTTTAATTAATGCTTATATTACATACGATAAAAGTTGTTT  600

seq1  ATGAGAGATTTTGAATTCTAGTCTGGGTTAGCTTTGTCACAATACATATT  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGAGAGATTTTGAATTCTAGTCTGGGTTAGCTTTGTCAC-ATACATATT  649

seq1  CTCTATTAACTGCATCTTTCCTGGATAGACTGAACTTCCAATTATCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTAACTGCATCTTTCCTGGATAGACTGAACTTCCAATTATCCACA  699

seq1  AGACACATTGAGTCCCTTTCCAC-AAACAGGGAAAATGGCAGAATTTGAC  749
      ||||||||||||| ||||||||| |||||||  ||||||||| |||||||
seq2  AGACACATTGAGT-CCTTTCCACAAAACAGG--AAATGGCAG-ATTTGAC  745

seq1  A-TCTCATAGGCTGCAGCACATGTCACAG-CTCCCTAACTTTTTTTTCAA  797
      | |||||   ||||||||||||||||||| ||||||||||||||||||||
seq2  ATTCTCAATAGCTGCAGCACATGTCACAGCCTCCCTAACTTTTTTTTCAA  795

seq1  ATCAGC-ACCAAATAATTTTTTCCA-GTGAC  826
      |||||| ||| ||||   ||||||| |||||
seq2  ATCAGCAACCGAATA---TTTTCCAGGTGAC  823


| Home | SequenceCutter | Blast | Download |