BAC Information

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BAC

Clone NameB6Ng01-261A17
Chromosome6 (Build37)
Map Location 97,629,716 - 97,770,705
singlet/doubletdoublet
Overlap geneLOC641241
Upstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
Downstream geneLOC100043692, Mitf, Gm765, LOC666019, LOC665963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261A17.bB6Ng01-261A17.g
ACCGA065812GA065813
length1,183151
definitionB6Ng01-261A17.b B6Ng01-261A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,769,527 - 97,770,705)(97,629,716 - 97,629,866)
sequence
gaattcattagagatgggaaaacaggccgaaagtcgtatttcacgtttta
ttcagcagaagttttgtggaaaacaattcggtcatgtggacgtgccccaa
accaccatcaccctgtttctcaacccaatctcccagtcaagtgacttcgg
actgcttccagttccaccctcgcagagctgagaagaaactaccctcactt
tgagatttgagccagtccttaggggagtaaagataggtgaatttcaagtc
actcagatagtcatactcttgggtagacctgtcatccatacccctggact
tttgtgccatgtcaccaacagtttccttttctacttaaacatgatgaata
tgagtgttctatcacctgacaggggccaactctgtcattatacattattt
ataaccaacatctttgcaagttttctatttcaagttcatttagaaaggtt
accctctagcacctattcatggttttcgaagtgtggcctctaccccaagc
cctcacccgagcaacaattagaagcttgtttagaaatatgacttctccaa
ccctatcctggactactagatcagaaagtggggcggtgcatccgaggtgc
ccctccccaagtgtggtatacttcagtgatgcacacttattataaatcac
tgttcaggtacattcccataaaccccatacctctatgttaaattattctt
ggattgctgtttcagaatgaacaattccctgacacagaatgccttcagta
aaaattatggagtgttgatatattgtcagatccaagaaaatcaatgatta
ttgatttaaaaaaaaatcacctgtttgtttgcttgaggaaggagggtaat
tctctctagaaagttctctaccagagctacatgagtgatatggcagtacc
caaggaaatcttggggtccacttagggttcactagtcagcacatccctga
aactaagacacgacattgatcatgaagttcaactctaagggctgaccatg
tggagagagactgaatgtgggggaaaggagattgttcataggtgaaaagt
gtattgtcagtaaaagaaaaggtgttcaaggaaagggatgctggctacca
gggcaacctaacttggaatgaatgtcaaggtgtgggtacccagaggacag
aggggtttccaagtccatgaagctccaatagag
tcttactgctctcacttctggaaatggaggaatatcccaacttcactgcc
caggcttgtgctgctaggtttgtgaacctgactggggataataggaggca
ataggagaggaagaaggagacggggaggggaagtcaagagaagggagggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_97769527_97770705
seq2: B6Ng01-261A17.b_44_1226 (reverse)

seq1  CTCTA-TGGAGCTTCATTGACTTTGAAAACCCCTCTTTGTCTCTCTTGGT  49
      ||||| ||||||||||| ||| ||| |||||||||  |||| |||| |||
seq2  CTCTATTGGAGCTTCATGGAC-TTGGAAACCCCTC--TGTC-CTCTGGGT  46

seq1  CCCCCACACC-TGACA-TCATTCC-AGTTAGTTTTCCCTGGTAGCCAGCA  96
        |||||||| ||||| ||||||| |||||| || |||||||||||||||
seq2  -ACCCACACCTTGACATTCATTCCAAGTTAGGTTGCCCTGGTAGCCAGCA  95

seq1  TCCCTTCCCT--GACACC-TTTCTTCTACTGGACAAT-CACTTTTCACCT  142
      |||||| |||   ||||| |||||| |||| |||||| ||||||||||||
seq2  TCCCTTTCCTTGAACACCTTTTCTTTTACT-GACAATACACTTTTCACCT  144

seq1  ATGAACAATCTC--TTTCCCCACATTCAGTCTCTCT-CACATGGTCAGCC  189
      ||||||||||||  || ||||||||||||||||||| |||||||||||||
seq2  ATGAACAATCTCCTTTCCCCCACATTCAGTCTCTCTCCACATGGTCAGCC  194

seq1  CTTAGAGTTGAACTTCATGATCAATGTCGTGTCCTTAGTTTCAGGGATGT  239
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTAGAGTTGAACTTCATGATCAATGTCGTGT-CTTAGTTTCAGGGATGT  243

seq1  GCTGACTAGTGAACCCTAAGTGGACCCCAAGATTTCCTTGGGTACTGCCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTAGTGAACCCTAAGTGGACCCCAAGATTTCCTTGGGTACTGCCA  293

seq1  TATCACTCATGTAGCTCTGGTAGAGAACTTTCTAGAGAGAATTACCCTCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCATGTAGCTCTGGTAGAGAACTTTCTAGAGAGAATTACCCTCC  343

seq1  TTCCTCAAGCAAACAAACAGGTGATTTTTTTTTAAATCAATAATCATTGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGCAAACAAACAGGTGATTTTTTTTTAAATCAATAATCATTGA  393

seq1  TTTTCTTGGATCTGACAATATATCAACACTCCATAATTTTTACTGAAGGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGGATCTGACAATATATCAACACTCCATAATTTTTACTGAAGGC  443

seq1  ATTCTGTGTCAGGGAATTGTTCATTCTGAAACAGCAATCCAAGAATAATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTCAGGGAATTGTTCATTCTGAAACAGCAATCCAAGAATAATT  493

seq1  TAACATAGAGGTATGGGGTTTATGGGAATGTACCTGAACAGTGATTTATA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGAGGTATGGGGTTTATGGGAATGTACCTGAACAGTGATTTATA  543

seq1  ATAAGTGTGCATCACTGAAGTATACCACACTTGGGGAGGGGCACCTCGGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTGCATCACTGAAGTATACCACACTTGGGGAGGGGCACCTCGGA  593

seq1  TGCACCGCCCCACTTTCTGATCTAGTAGTCCAGGATAGGGTTGGAGAAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCGCCCCACTTTCTGATCTAGTAGTCCAGGATAGGGTTGGAGAAGT  643

seq1  CATATTTCTAAACAAGCTTCTAATTGTTGCTCGGGTGAGGGCTTGGGGTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTAAACAAGCTTCTAATTGTTGCTCGGGTGAGGGCTTGGGGTA  693

seq1  GAGGCCACACTTCGAAAACCATGAATAGGTGCTAGAGGGTAACCTTTCTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACACTTCGAAAACCATGAATAGGTGCTAGAGGGTAACCTTTCTA  743

seq1  AATGAACTTGAAATAGAAAACTTGCAAAGATGTTGGTTATAAATAATGTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTTGAAATAGAAAACTTGCAAAGATGTTGGTTATAAATAATGTA  793

seq1  TAATGACAGAGTTGGCCCCTGTCAGGTGATAGAACACTCATATTCATCAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAGAGTTGGCCCCTGTCAGGTGATAGAACACTCATATTCATCAT  843

seq1  GTTTAAGTAGAAAAGGAAACTGTTGGTGACATGGCACAAAAGTCCAGGGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTAGAAAAGGAAACTGTTGGTGACATGGCACAAAAGTCCAGGGG  893

seq1  TATGGATGACAGGTCTACCCAAGAGTATGACTATCTGAGTGACTTGAAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGACAGGTCTACCCAAGAGTATGACTATCTGAGTGACTTGAAAT  943

seq1  TCACCTATCTTTACTCCCCTAAGGACTGGCTCAAATCTCAAAGTGAGGGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATCTTTACTCCCCTAAGGACTGGCTCAAATCTCAAAGTGAGGGT  993

seq1  AGTTTCTTCTCAGCTCTGCGAGGGTGGAACTGGAAGCAGTCCGAAGTCAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTCTCAGCTCTGCGAGGGTGGAACTGGAAGCAGTCCGAAGTCAC  1043

seq1  TTGACTGGGAGATTGGGTTGAGAAACAGGGTGATGGTGGTTTGGGGCACG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGGGAGATTGGGTTGAGAAACAGGGTGATGGTGGTTTGGGGCACG  1093

seq1  TCCACATGACCGAATTGTTTTCCACAAAACTTCTGCTGAATAAAACGTGA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGACCGAATTGTTTTCCACAAAACTTCTGCTGAATAAAACGTGA  1143

seq1  AATACGACTTTCGGCCTGTTTTCCCATCTCTAATGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATACGACTTTCGGCCTGTTTTCCCATCTCTAATGAATTC  1183

seq1: chr6_97629716_97629866
seq2: B6Ng01-261A17.g_72_222

seq1  TCTTACTGCTCTCACTTCTGGAAATGGAGGAATATCCCAACTTCACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGCTCTCACTTCTGGAAATGGAGGAATATCCCAACTTCACTGCC  50

seq1  CAGGCTTGTGCTGCTAGGTTTGTGAACCTGACTGGGGATAATAGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGTGCTGCTAGGTTTGTGAACCTGACTGGGGATAATAGGAGGCA  100

seq1  ATAGGAGAGGAAGAAGGAGACGGGGAGGGGAAGTCAAGAGAAGGGAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAGGAAGAAGGAGACGGGGAGGGGAAGTCAAGAGAAGGGAGGGG  150

seq1  A  151
      |
seq2  A  151