BAC Information

Click to search

BAC

Clone NameB6Ng01-261G03
Chromosome6 (Build37)
Map Location 25,807,079 - 25,892,543
singlet/doubletdoublet
Overlap genenone
Upstream geneHyal5, 6332401O19Rik, LOC384358, Gpr37, Pot1a
Downstream geneEG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261G03.bB6Ng01-261G03.g
ACCGA066066GA066067
length1,173956
definitionB6Ng01-261G03.b B6Ng01-261G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,807,079 - 25,808,241)(25,891,593 - 25,892,543)
sequence
gaattcccagtggagcccagaggaaaaagccaggctgatgatatagaaaa
ccaacgatttacctataataggccaacaacaataagaacagtgaattttg
tagaggacaccttacatcactcgggtatcaactgacttttattctgtcct
tgaaacaactatccaatagccatatactacaaaatcttcataactaacac
agaattttgagttaagaaacttttttttgtttaaattcagtgcttattat
gcaaggtgttaggagccagtggtttacctgagtcatctctattttagtct
tgcatcatattatcaatccctctcacattttcagagctctcctagttcaa
tgataatttatacaatccatccaagtaaatagtgtcattacttgctatac
ttaatatacttttaaagttatgaactagatatttttggattagacccttc
attgacttcctgaagtctataaaattcaaaatcttatagttatctgtagc
tatattatgtgatacacacacacacacacacacacacacacaaacacatt
ttatgcctgacttacagcattttcagatttttcttctgattccatgatct
aaaatattaatagcatttcttcttccacaaacatattgtgattttgtaca
tcttcaagagatttgtttttcttctgtttgtaatgttatatttcctgctc
tccacaagcaacttactattcttgagatctcagttcaatgatgtggtcat
tacctacctatagagtggtaactctagtctttttatttatttatttattt
atttatttttattttttttgtaactctagcattaactatgccattgtctt
cagtcccatcagaaaaattataacaaaagttagttaaaaatagcagtaca
tttgattcacttccaccaaaaaagaagctacttgagagaattgtatctca
aggtttcgacagagaatctggtagatagagttaactgtctatttagataa
agatgctatagtcctgacctctgcaattatattttagaggtccttgacct
aaaaatatcagcttatttatactgtgtttttattttccaggtaagcccac
ccggccattcatgccaacattttttattatttattgtgacatttattaaa
aacagtccttaatgtgtttagtg

gaattctgagaaacacaacagcgtcagaaatcaaacagactgaaaccagc
aggccatgaggaccatgaggagtcaatgtgtgagtcagagagttgaatac
attgcttgtcagcttaactagttaaatatcatccttccttttacagggaa
ccatctagtttttggtaactttagtatcaattattcccaacacgatcact
ctaagagaaaagaagaggaaagcaaggaaaaaaataaactctggggtacc
acctgtatcagagttaagcatcatatcattgtctgtcaggaactgaactc
attctaggggaccagtctgcaactgccctgtgaacattaagaactagaat
aatttgcacttccaattgattacttctcaagacattattattgtgtgagt
catgcaactgttttagatttcagaatatacctcaaatgacagttatttcc
tctcagcccacattagctgatatctatgttctaggttttttttttgcttt
tttttgtttttgtttttttgatttttgtttgtttgttttgtttgtttgtt
ttggtttttttagtaattttgaagaaatttttaaatagcacttcaggtac
ttagtggttcattacttttagacatttccagatgatttcccttcttgcag
ctctaacatagcccattgttacatttccagatctctctctctcagtaacg
atatagccaatatctgaggctctcagttttctctgctttaacctggtaga
aaatatatcacataggcaaaatttttatttaactgatttctgtccatttt
caacaagaatattaatgaacatccataagccagccatgtgtcaagaaaat
aatatgtaatagtgctttataaccagctgcatattcctcccctgtcacag
cttcttggattatgattttattcattttattagtttattaaatatattaa
caatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25807079_25808241
seq2: B6Ng01-261G03.b_42_1214

seq1  GAATTCCCAGTGGAGCCCAGAGGAAAAAGCCAGGCTGATGATATAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTGGAGCCCAGAGGAAAAAGCCAGGCTGATGATATAGAAAA  50

seq1  CCAACGATTTACCTATAATAGGCCAACAACAATAAGAACAGTGAATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGATTTACCTATAATAGGCCAACAACAATAAGAACAGTGAATTTTG  100

seq1  TAGAGGACACCTTACATCACTCGGGTATCAACTGACTTTTATTCTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACACCTTACATCACTCGGGTATCAACTGACTTTTATTCTGTCCT  150

seq1  TGAAACAACTATCCAATAGCCATATACTACAAAATCTTCATAACTAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAACTATCCAATAGCCATATACTACAAAATCTTCATAACTAACAC  200

seq1  AGAATTTTGAGTTAAGAAACTTTTTTTTGTTTAAATTCAGTGCTTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGAGTTAAGAAACTTTTTTTTGTTTAAATTCAGTGCTTATTAT  250

seq1  GCAAGGTGTTAGGAGCCAGTGGTTTACCTGAGTCATCTCTATTTTAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGTTAGGAGCCAGTGGTTTACCTGAGTCATCTCTATTTTAGTCT  300

seq1  TGCATCATATTATCAATCCCTCTCACATTTTCAGAGCTCTCCTAGTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATATTATCAATCCCTCTCACATTTTCAGAGCTCTCCTAGTTCAA  350

seq1  TGATAATTTATACAATCCATCCAAGTAAATAGTGTCATTACTTGCTATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTATACAATCCATCCAAGTAAATAGTGTCATTACTTGCTATAC  400

seq1  TTAATATACTTTTAAAGTTATGAACTAGATATTTTTGGATTAGACCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATACTTTTAAAGTTATGAACTAGATATTTTTGGATTAGACCCTTC  450

seq1  ATTGACTTCCTGAAGTCTATAAAATTCAAAATCTTATAGTTATCTGTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTCCTGAAGTCTATAAAATTCAAAATCTTATAGTTATCTGTAGC  500

seq1  TATATTATGTGATACACACACACACACACACACACACACACAAACACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATGTGATACACACACACACACACACACACACACACAAACACATT  550

seq1  TTATGCCTGACTTACAGCATTTTCAGATTTTTCTTCTGATTCCATGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTGACTTACAGCATTTTCAGATTTTTCTTCTGATTCCATGATCT  600

seq1  AAAATATTAATAGCATTTCTTCTTCCACAAACATATTGTGATTTTGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAATAGCATTTCTTCTTCCACAAACATATTGTGATTTTGTACA  650

seq1  TCTTCAAGAGATTTGTTTTTCTTCTGTTTGTAATGTTATATTTCCTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGAGATTTGTTTTTCTTCTGTTTGTAATGTTATATTTCCTGCTC  700

seq1  TCCACAAGCAACTTACTATTCTTGAGATCTCAGTTCAATGATGTGGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGCAACTTACTATTCTTGAGATCTCAGTTCAATGATGTGGTCAT  750

seq1  TACCTACCTATAGAGTGGTAACTCTAGTCTTTTTATTTATTTATTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCTATAGAGTGGTAACTCTAGTCTTTTTATTTATTTATTTATTT  800

seq1  ATTTATTTTTATTTTTTTTGTAACTCTAGCATTAACTATGCCATTGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTATTTTTTTTGTAACTCTAGCATTAACTATGCCATTGTCTT  850

seq1  CAGTCCCATCAGAAAAATTATAACAAAAGTTAGTTAAAAATAGCAGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCATCAGAAAAATTATAACAAAAGTTAGTTAAAAATAGCAGTACA  900

seq1  TTTGATTCACTTCCACCAAAAAAGAAGCTACTTGAGAGAATTGTATCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCACTTCCACCAAAAAAGAAGCTACTTGAGAGAATTGTATCTCA  950

seq1  AGGTTTCGACAGAGAATCTGGTAGATAAGAGTTAACTGTCTATTTAGATA  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  AGGTTTCGACAGAGAATCTGGTAGAT-AGAGTTAACTGTCTATTTAGAT-  998

seq1  AAAGATGCTATAGTCCTGA-CTCTGCAATTATATTTAAGAGGTCCTTGAC  1049
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  AAAGATGCTATAGTCCTGACCTCTGCAATTATATTTTAGAGGTCCTTGAC  1048

seq1  CTAAAAATATCAGC-TATTTATACTGTG-TTTTATTTTC--AGTAAG-CC  1094
      |||||||||||||| ||||||||||||| ||||||||||   ||||| ||
seq2  CTAAAAATATCAGCTTATTTATACTGTGTTTTTATTTTCCAGGTAAGCCC  1098

seq1  ACCCGGCCA-TCATG-CAACA-TTTTTATTA-TTATTGTGAACATTTAT-  1139
      ||||||||| ||||| ||||| ||||||||| |||||||| |||||||| 
seq2  ACCCGGCCATTCATGCCAACATTTTTTATTATTTATTGTG-ACATTTATT  1147

seq1  -AAAACAGTCTTAATTGTG-TTAGTG  1163
       ||||||||| | | |||| ||||||
seq2  AAAAACAGTCCTTAATGTGTTTAGTG  1173


seq1: chr6_25891593_25892543
seq2: B6Ng01-261G03.g_66_1021 (reverse)

seq1  AGATTGTTAATATATTTAAT-AACT-ATAAAATGAATAAAATCATAATCC  48
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  AGATTGTTAATATATTTAATAAACTAATAAAATGAATAAAATCATAATCC  50

seq1  AAGAAGCTGTGACA-GGGAGGAATATGCAGCTGGTTATAAAGCACTATTA  97
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGTGACAGGGGAGGAATATGCAGCTGGTTATAAAGCACTATTA  100

seq1  CATATTATTTTCTTGACACATGGCTGGCTTATGGATGTTCATTAATATTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATTTTCTTGACACATGGCTGGCTTATGGATGTTCATTAATATTC  150

seq1  TTGTTG-AAATGGACAGAAATCAGTTAAATAAAAATTTTGCCTATGTGAT  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAATGGACAGAAATCAGTTAAATAAAAATTTTGCCTATGTGAT  200

seq1  ATATTTTCTACCAGGTTAAAGCAGAG-AAACTGAGAGCCTCAGATATTGG  245
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATTTTCTACCAGGTTAAAGCAGAGAAAACTGAGAGCCTCAGATATTGG  250

seq1  CTATTTCGTTACTGAGAGAGAGAGATCTGGAAATGTAACAATGGGCTATG  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCGTTACTGAGAGAGAGAGATCTGGAAATGTAACAATGGGCTATG  300

seq1  TTAGAGCTGCAAGAAGGGAAATCATCTGGAAATGTCTAAAAGTAATGAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTGCAAGAAGGGAAATCATCTGGAAATGTCTAAAAGTAATGAAC  350

seq1  CACTAAGTACCTGAAGTGCTATTTAAAAATTTCTTCAAAATTACTAAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTACCTGAAGTGCTATTTAAAAATTTCTTCAAAATTACTAAAAA  400

seq1  AACCAAAACAAACAAACAAAACAAACAAACAAAAATCAAAAAAACAAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACAAACAAACAAAACAAACAAACAAAAATCAAAAAAACAAAAA  450

seq1  CAAAAAAAAGCAAAAAAAAAACCTAGAACATAGATATCAGCTAATGTGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAGCAAAAAAAAAACCTAGAACATAGATATCAGCTAATGTGGG  500

seq1  CTGAGAGGAAATAACTGTCATTTGAGGTATATTCTGAAATCTAAAACAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAAATAACTGTCATTTGAGGTATATTCTGAAATCTAAAACAGT  550

seq1  TGCATGACTCACACAATAATAATGTCTTGAGAAGTAATCAATTGGAAGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACTCACACAATAATAATGTCTTGAGAAGTAATCAATTGGAAGTG  600

seq1  CAAATTATTCTAGTTCTTAATGTTCACAGGGCAGTTGCAGACTGGTCCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATTCTAGTTCTTAATGTTCACAGGGCAGTTGCAGACTGGTCCCC  650

seq1  TAGAATGAGTTCAGTTCCTGACAGACAATGATATGATGCTTAACTCTGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGTTCAGTTCCTGACAGACAATGATATGATGCTTAACTCTGAT  700

seq1  ACAGGTGGTACCCCAGAGTTTATTTTTTTCCTTGCTTTCCTCTTCTTTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGGTACCCCAGAGTTTATTTTTTTCCTTGCTTTCCTCTTCTTTTC  750

seq1  TCTTAGAGTGATCGTGTTGGGAATAATTGATACTAAAGTTACCAAAAACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTGATCGTGTTGGGAATAATTGATACTAAAGTTACCAAAAACT  800

seq1  AGATGGTTCCCTGTAAAAGGAAGGATGATATTTAACTAGTTAAGCTGACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTCCCTGTAAAAGGAAGGATGATATTTAACTAGTTAAGCTGACA  850

seq1  AGCAATGTATTCAACTCTCTGACTCACACATTGACTCCTCATGGTCCTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTATTCAACTCTCTGACTCACACATTGACTCCTCATGGTCCTCA  900

seq1  TGGCCTGCTGGTTTCAGTCTGTTTGATTTCTGACGCTGTTGTGTTTCTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCTGGTTTCAGTCTGTTTGATTTCTGACGCTGTTGTGTTTCTCA  950

seq1  GAATTC  951
      ||||||
seq2  GAATTC  956


| Home | SequenceCutter | Blast | Download |