BAC Information

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BAC

Clone NameB6Ng01-261J06
Chromosome6 (Build37)
Map Location 65,828,527 - 65,957,571
singlet/doubletdoublet
Overlap genePrdm5, 4930544G11Rik, Ppia-ps6_651.1
Upstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160
Downstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J06.bB6Ng01-261J06.g
ACCGA066213GA066214
length1,0961,132
definitionB6Ng01-261J06.b B6Ng01-261J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,956,458 - 65,957,571)(65,828,527 - 65,829,658)
sequence
gaattctcctttatccatgagcagcatccgattctaagaacagtactcag
cattttgttcttgaggaattactggcatagttgataaaattttagaactc
tgacatctatatggtgagatcttgaatgtggcattaagatggcaccgtag
cttacctttcaggacatgccatctgtgctacactgtatgatatgaccacc
gttttacactttgctgtatgtaaactgtaccgaaataacccagaacaaat
agtgaggaccatggtgctggagactgggaacatgagacactagggatcgg
acatagataggcccagagtcccagtgctcagctggttgctacttacaacc
aaatgatgagagggatcctgtggacctgggttcagagctgtgatgatcag
gtgccagtcagctgtcactatggagacattcctattgtcatcagtgaagc
tccagttatgaaagacatatgaggtgaaccaacatggcagttgatctatc
taaatccagctcttaactttcaaattcatagagttctgcacacagctgcc
aaagtgttctttccaataacaaaacacatctcctatccaatctttcctaa
actacagccatttccagttgagtggtgtttgaaatatggattcttcccgc
tagtgtaggggtcttctataataacccagtccattttctctgttccttta
agaactgtgtgctttttaaattgaatgaatttccattttcaacatctact
acatcataaatctcagcctcatattatccccaaatttattttccaaaagt
agcaatacatatacaaaatatatcattggtttccattccagtatcacaaa
gaaaatgtatagttttagggaaaagaaggaaccttttttttttttttttt
tgccaattaaaacttaagcgaggactaaatgtgtatgtaagtctaaagga
atttactgttaatacaaccttgtgacacctttttctgattttcacagatt
cgctagacctgctcaaagggaaattttcagcaatcacagggtctgttcgg
gtcttgtgatgccacttctgtggagttgctgactgcatcacactga
gaattctttaatctattctccgcagcactctgctccttctcatttttctc
cacagctcatatcacttcctaatgtagaatgtgtgtctatcatacacaca
ggataatatccctgtgaggtttttacatttgtggtttttcttcctgagtc
cttacaatctgacataggattgacccataaaagcaaaatgtattctgtag
acctgacacaaaaaaccctgtcagatgaaattgacagaggtctcttccat
tagttttcttttggcattttccatgtttaaaattaactttatattagcta
tgttaaactgttatttgatgtcacaaatatattctttggtgattagaaaa
cattttgtctttatagttgtcttagttagactttccattgctgtgaagag
acgccatgaccaaggcaactcttacaaaggacaacatttaattggggctt
acagtttcagaggctcagtccattatcatcatagcaggaagcatggcagc
cttcaggcagatatgttgctggagaagaagctgagagttctacatcttga
accaaatgcaggcagaaggggaccgtcttccataggcagccaggaggagg
ttctcttcagcactgggcagagctggagcactaggagacctcaaagccca
tctacacagtgacacacttcctccaacaaagccacacctaatccaacaag
acctcacctccaacagtgcaacttcccaaaggccaagcgtattcaaacca
ccacaacaatttaaaaattttttaaaaatctgaatatctagtcttttatt
atacttagaaaactttttccactcaaaaattgtttaaaattactcacatt
ttcttttatgacatttcatgttttattcttcacttaaaaaaaatagctga
aggccagatgtggttggtgtgtttctagactcagcatttgtgaggtttgt
atacaagggcctgatagaagctcaaggtcaacctgagctgccacagcaag
attgtctcagaagaagcagatatggataattaaaatactaaattcatatt
agccttctctctatgtagaagtgattgcccactttagttgcatcagagtt
caggtaaacactgcatgctctgtcagcaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65956458_65957571
seq2: B6Ng01-261J06.b_44_1139 (reverse)

seq1  TCAGTGGTAGAATGCAGTCAGCACCCCTCCCCACAGGAAGTGGGGCATCA  50
      ||||||     ||||||||||||     | ||||| |||||  |||||||
seq2  TCAGTG---TGATGCAGTCAGCA----ACTCCACA-GAAGT--GGCATCA  40

seq1  CATAGGACCCCAAAACAGAACCCCTTGTTGATTTGCTGAAAATTTCCCTT  100
      |  | |||||   ||||||  ||||   ||| ||||||||||||||||||
seq2  C--AAGACCC--GAACAGA--CCCT--GTGA-TTGCTGAAAATTTCCCTT  81

seq1  TGAGCAAGTCTAGCGAATCTGTGAAAATCAGAAAAAGGTGTCACAAGGTT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGTCTAGCGAATCTGTGAAAATCAGAAAAAGGTGTCACAAGGTT  131

seq1  GTATTAACAGTTAAATTCCTTTAGACTTACATACACATTTAGTCCTCGCT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACAG-TAAATTCCTTTAGACTTACATACACATTTAGTCCTCGCT  180

seq1  TAAGTTTTAATTGGC--AAAAAAAAAAAAAAAAGGTTCCTTCTTTTCCCT  248
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TAAGTTTTAATTGGCAAAAAAAAAAAAAAAAAAGGTTCCTTCTTTTCCCT  230

seq1  AAAACTATACATTTTCTTTGTGATACTGGAATGGAAACCAATGATATATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATACATTTTCTTTGTGATACTGGAATGGAAACCAATGATATATT  280

seq1  TTGTATATGTATTGCTACTTTTGGAAAATAAATTTGGGGATAATATGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATGTATTGCTACTTTTGGAAAATAAATTTGGGGATAATATGAGG  330

seq1  CTGAGATTTATGATGTAGTAGATGTTGAAAATGGAAATTCATTCAATTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTATGATGTAGTAGATGTTGAAAATGGAAATTCATTCAATTTA  380

seq1  AAAAGCACACAGTTCTTAAAGGAACAGAGAAAATGGACTGGGTTATTATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACACAGTTCTTAAAGGAACAGAGAAAATGGACTGGGTTATTATA  430

seq1  GAAGACCCCTACACTAGCGGGAAGAATCCATATTTCAAACACCACTCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCCTACACTAGCGGGAAGAATCCATATTTCAAACACCACTCAAC  480

seq1  TGGAAATGGCTGTAGTTTAGGAAAGATTGGATAGGAGATGTGTTTTGTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGGCTGTAGTTTAGGAAAGATTGGATAGGAGATGTGTTTTGTTA  530

seq1  TTGGAAAGAACACTTTGGCAGCTGTGTGCAGAACTCTATGAATTTGAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGAACACTTTGGCAGCTGTGTGCAGAACTCTATGAATTTGAAAG  580

seq1  TTAAGAGCTGGATTTAGATAGATCAACTGCCATGTTGGTTCACCTCATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCTGGATTTAGATAGATCAACTGCCATGTTGGTTCACCTCATAT  630

seq1  GTCTTTCATAACTGGAGCTTCACTGATGACAATAGGAATGTCTCCATAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCATAACTGGAGCTTCACTGATGACAATAGGAATGTCTCCATAGT  680

seq1  GACAGCTGACTGGCACCTGATCATCACAGCTCTGAACCCAGGTCCACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGACTGGCACCTGATCATCACAGCTCTGAACCCAGGTCCACAGG  730

seq1  ATCCCTCTCATCATTTGGTTGTAAGTAGCAACCAGCTGAGCACTGGGACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTCATCATTTGGTTGTAAGTAGCAACCAGCTGAGCACTGGGACT  780

seq1  CTGGGCCTATCTATGTCCGATCCCTAGTGTCTCATGTTCCCAGTCTCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTATCTATGTCCGATCCCTAGTGTCTCATGTTCCCAGTCTCCAG  830

seq1  CACCATGGTCCTCACTATTTGTTCTGGGTTATTTCGGTACAGTTTACATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGTCCTCACTATTTGTTCTGGGTTATTTCGGTACAGTTTACATA  880

seq1  CAGCAAAGTGTAAAACGGTGGTCATATCATACAGTGTAGCACAGATGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGTGTAAAACGGTGGTCATATCATACAGTGTAGCACAGATGGCA  930

seq1  TGTCCTGAAAGGTAAGCTACGGTGCCATCTTAATGCCACATTCAAGATCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAAAGGTAAGCTACGGTGCCATCTTAATGCCACATTCAAGATCT  980

seq1  CACCATATAGATGTCAGAGTTCTAAAATTTTATCAACTATGCCAGTAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATAGATGTCAGAGTTCTAAAATTTTATCAACTATGCCAGTAATT  1030

seq1  CCTCAAGAACAAAATGCTGAGTACTGTTCTTAGAATCGGATGCTGCTCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAACAAAATGCTGAGTACTGTTCTTAGAATCGGATGCTGCTCAT  1080

seq1  GGATAAAGGAGAATTC  1114
      ||||||||||||||||
seq2  GGATAAAGGAGAATTC  1096

seq1: chr6_65828527_65829658
seq2: B6Ng01-261J06.g_64_1195

seq1  GAATTCTTTAATCTATTCTCCGCAGCACTCTGCTCCTTCTCATTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCTATTCTCCGCAGCACTCTGCTCCTTCTCATTTTTCTC  50

seq1  CACAGCTCATATCACTTCCTAATGTAGAATGTGTGTCTATCATACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCATATCACTTCCTAATGTAGAATGTGTGTCTATCATACACACA  100

seq1  GGATAATATCCCTGTGAGGTTTTTACATTTGTGGTTTTTCTTCCTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATATCCCTGTGAGGTTTTTACATTTGTGGTTTTTCTTCCTGAGTC  150

seq1  CTTACAATCTGACATAGGATTGACCCATAAAAGCAAAATGTATTCTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATCTGACATAGGATTGACCCATAAAAGCAAAATGTATTCTGTAG  200

seq1  ACCTGACACAAAAAACCCTGTCAGATGAAATTGACAGAGGTCTCTTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACACAAAAAACCCTGTCAGATGAAATTGACAGAGGTCTCTTCCAT  250

seq1  TAGTTTTCTTTTGGCATTTTCCATGTTTAAAATTAACTTTATATTAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTTTTGGCATTTTCCATGTTTAAAATTAACTTTATATTAGCTA  300

seq1  TGTTAAACTGTTATTTGATGTCACAAATATATTCTTTGGTGATTAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACTGTTATTTGATGTCACAAATATATTCTTTGGTGATTAGAAAA  350

seq1  CATTTTGTCTTTATAGTTGTCTTAGTTAGACTTTCCATTGCTGTGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCTTTATAGTTGTCTTAGTTAGACTTTCCATTGCTGTGAAGAG  400

seq1  ACGCCATGACCAAGGCAACTCTTACAAAGGACAACATTTAATTGGGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCATGACCAAGGCAACTCTTACAAAGGACAACATTTAATTGGGGCTT  450

seq1  ACAGTTTCAGAGGCTCAGTCCATTATCATCATAGCAGGAAGCATGGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCAGAGGCTCAGTCCATTATCATCATAGCAGGAAGCATGGCAGC  500

seq1  CTTCAGGCAGATATGTTGCTGGAGAAGAAGCTGAGAGTTCTACATCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCAGATATGTTGCTGGAGAAGAAGCTGAGAGTTCTACATCTTGA  550

seq1  ACCAAATGCAGGCAGAAGGGGACCGTCTTCCATAGGCAGCCAGGAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGCAGGCAGAAGGGGACCGTCTTCCATAGGCAGCCAGGAGGAGG  600

seq1  TTCTCTTCAGCACTGGGCAGAGCTGGAGCACTAGGAGACCTCAAAGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCAGCACTGGGCAGAGCTGGAGCACTAGGAGACCTCAAAGCCCA  650

seq1  TCTACACAGTGACACACTTCCTCCAACAAAGCCACACCTAATCCAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAGTGACACACTTCCTCCAACAAAGCCACACCTAATCCAACAAG  700

seq1  ACCTCACCTCCAACAGTGCAACTTCCCAAAGGCCAAGCGTATTCAAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCTCCAACAGTGCAACTTCCCAAAGGCCAAGCGTATTCAAACCA  750

seq1  CCACAACAATTTAAAAATTTTTTAAAAATCTGAATATCTAGTCTTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAATTTAAAAATTTTTTAAAAATCTGAATATCTAGTCTTTTATT  800

seq1  ATACTTAGAAAACTTTTTCCACTCAAAAATTGTTTAAAAATTACTCACAT  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATACTTAGAAAACTTTTTCCACTCAAAAATTGTTT-AAAATTACTCACAT  849

seq1  TTTCTTTTATGACATTTCATGTTTTATTCTTCACTTAAAAAAAATAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTATGACATTTCATGTTTTATTCTTCACTTAAAAAAAATAGCTG  899

seq1  AA-GCCAGATGTGG-TGGTGTGTTTCTAGACTCAGCATTTGTGAGGTTTG  948
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGATGTGGTTGGTGTGTTTCTAGACTCAGCATTTGTGAGGTTTG  949

seq1  TATACAAAGGCCTGATAGAAGCTCAAGGTCAACCTGAGCTG-CACAGCAA  997
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TATACAAGGGCCTGATAGAAGCTCAAGGTCAACCTGAGCTGCCACAGCAA  999

seq1  GATTGTCTCAG-AGAAGCAAGATATGGATAAAT-AAATACTAAATTCATA  1045
      ||||||||||| |||||| |||||||||||| | ||||||||||||||||
seq2  GATTGTCTCAGAAGAAGC-AGATATGGATAATTAAAATACTAAATTCATA  1048

seq1  -TAG-CTTCTCTCCTATTGTAGGAAGTGATGGCCCAACTTTAGTTGCATC  1093
       ||| ||||||| ||| |||| |||||||| |||| ||||||||||||||
seq2  TTAGCCTTCTCT-CTA-TGTA-GAAGTGATTGCCC-ACTTTAGTTGCATC  1094

seq1  AGAATTTCAGTAAACACTGCATGCTTCTGTCAGCCAGTT  1132
      ||| ||   ||||||||||||||| ||||||||| ||||
seq2  AGAGTTCAGGTAAACACTGCATGC-TCTGTCAGCAAGTT  1132