BAC Information

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BAC

Clone NameB6Ng01-261L17
Chromosome6 (Build37)
Map Location 142,432,792 - 142,589,276
singlet/doubletdoublet
Overlap geneLdhb, Kcnj8, Abcc9, 5330439B14Rik
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2
Downstream geneCmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261L17.bB6Ng01-261L17.g
ACCGA066327GA066328
length1421,138
definitionB6Ng01-261L17.b B6Ng01-261L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,432,792 - 142,432,933)(142,588,139 - 142,589,276)
sequence
tgggatcagagaaccaactgtttaaggtaactttacagagtgacaggtat
ttctgatgatagcaaagcatgtgaccatgtgactgggtgacagaggaggg
tccatcagcatgcagcaagtgagagagggagggaggaaggga
gaattcccaaagccagtgattggctagcaaatcctataattaaactcttg
ctgcattggtgctgggaagagaaggtgaccctaccagtggtatactgaaa
gatggtttacgtccttctccaggacagggactgtagtgtcttgaatgatg
atacttttattttaaagtaagctgtcctctggagctcttaacccctgagc
catctctccacatccatctgtgacaatttttaaaagcaagttattaggca
gtggaaagacagattagtctcttagatgttctattttatagaatgtctta
gaaacaactggtattcataaaaatgagtcaaagattcagaaagattttga
aacattacaatattataaaatttgggggggaatcaatttcatttcattac
tttctaaaatacattcataaactcagataacataaaaacagacatttata
tctacatatgttagatatttgtatatgtacatatacatacaaaatgacac
ttgttaaatatttcattatctagaatatctatgtatttaaatggttgaaa
taagctactgcgttcttatccctgctaccaaatgtattcatataaaaacc
atttaaggacactcattaatgtacccatgcatctgtaactacagtatata
aacaaaataactaattaatttactaatatttatttttcacacgtttgctc
ttaaatactttaataaacccattgctattgtttctgtttattgagcagag
agtaattgagtgctgaataaatatcgagctaattatattattctgtgatg
gccaggcacataaactgacttcaacttctaaacataattgctttacttca
ccgtctacgtaatcagtctatcttatctgtgtagcgagtaagactgtact
aattctctgagttctcatttctgagtgtgtgagtgtactgcagggttgta
gacctgattgggatgagaatccagccactttcttcctcggtccgttgtgt
agatatctgtttgcatattataaaagaagcaggagtacagccacagaaat
cagctagccaaagcagacgtgctctggcacacctaagttctcacaacagc
ctggggtggggttctttttccgttttcagttggatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142432792_142432933
seq2: B6Ng01-261L17.b_47_188

seq1  TGGGATCAGAGAACCAACTGTTTAAGGTAACTTTACAGAGTGACAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAGAGAACCAACTGTTTAAGGTAACTTTACAGAGTGACAGGTAT  50

seq1  TTCTGATGATAGCAAAGCATGTGACCATGTGACTGGGTGACAGAGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGATAGCAAAGCATGTGACCATGTGACTGGGTGACAGAGGAGGG  100

seq1  TCCATCAGCATGCAGCAAGTGAGAGAGGGAGGGAGGAAGGGA  142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGCATGCAGCAAGTGAGAGAGGGAGGGAGGAAGGGA  142

seq1: chr6_142588139_142589276
seq2: B6Ng01-261L17.g_67_1204 (reverse)

seq1  GAGAACCAACTGAAAAACGGGAAAAAGAAACACCACCCAAGCTGTTGGTG  50
      |||| |||||||||||   |||||||||| | |  |||| |||||| |||
seq2  GAGATCCAACTGAAAA--CGGAAAAAGAACCCCACCCCAGGCTGTT-GTG  47

seq1  AAGAACTTA-GTGTGCCCAGAGCACGTCTGCTTT-GCTAGCTTGATTTCT  98
       |||||||| ||||| |||||||||||||||||| |||||| ||||||||
seq2  -AGAACTTAGGTGTG-CCAGAGCACGTCTGCTTTGGCTAGC-TGATTTCT  94

seq1  GT-GCTGTACTCCTGCTTC-TTTATAATATGCAAACAGATATCTACAC-A  145
      || |||||||||||||||| |||||||||||||||||||||||||||| |
seq2  GTGGCTGTACTCCTGCTTCTTTTATAATATGCAAACAGATATCTACACAA  144

seq1  CGGACCCGAGGAAG-AAGTGGCTGGATTCTCATCCC-ATCAGGTCTAC-A  192
      |||| ||||||||| ||||||||||||||||||||| ||||||||||| |
seq2  CGGA-CCGAGGAAGAAAGTGGCTGGATTCTCATCCCAATCAGGTCTACAA  193

seq1  CCCTGCAGTACACTCACACACTCAGAAATGAGAACTCAGAGAATTTAGTA  242
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGCAGTACACTCACACACTCAGAAATGAGAACTCAGAGAA-TTAGTA  242

seq1  CAGTCTTACTCGCTACACAGATAAGATAGACTGATTACGTAGACGGTGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTACTCGCTACACAGATAAGATAGACTGATTACGTAGACGGTGAA  292

seq1  GTAAAGCAATTATGTTTAGAAGTTGAAGTCAGTTTATGTGCCTGGCCATC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCAATTATGTTTAGAAGTTGAAGTCAGTTTATGTGCCTGGCCATC  342

seq1  ACAGAATAATATAATTAGCTCGATATTTATTCAGCACTCAATTACTCTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAATATAATTAGCTCGATATTTATTCAGCACTCAATTACTCTCT  392

seq1  GCTCAATAAACAGAAACAATAGCAATGGGTTTATTAAAGTATTTAAGAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATAAACAGAAACAATAGCAATGGGTTTATTAAAGTATTTAAGAGC  442

seq1  AAACGTGTGAAAAATAAATATTAGTAAATTAATTAGTTATTTTGTTTATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTGAAAAATAAATATTAGTAAATTAATTAGTTATTTTGTTTATA  492

seq1  TACTGTAGTTACAGATGCATGGGTACATTAATGAGTGTCCTTAAATGGTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTTACAGATGCATGGGTACATTAATGAGTGTCCTTAAATGGTT  542

seq1  TTTATATGAATACATTTGGTAGCAGGGATAAGAACGCAGTAGCTTATTTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGAATACATTTGGTAGCAGGGATAAGAACGCAGTAGCTTATTTC  592

seq1  AACCATTTAAATACATAGATATTCTAGATAATGAAATATTTAACAAGTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTAAATACATAGATATTCTAGATAATGAAATATTTAACAAGTGT  642

seq1  CATTTTGTATGTATATGTACATATACAAATATCTAACATATGTAGATATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTATGTATATGTACATATACAAATATCTAACATATGTAGATATA  692

seq1  AATGTCTGTTTTTATGTTATCTGAGTTTATGAATGTATTTTAGAAAGTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTTTTTATGTTATCTGAGTTTATGAATGTATTTTAGAAAGTAA  742

seq1  TGAAATGAAATTGATTCCCCCCCAAATTTTATAATATTGTAATGTTTCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAATTGATTCCCCCCCAAATTTTATAATATTGTAATGTTTCAA  792

seq1  AATCTTTCTGAATCTTTGACTCATTTTTATGAATACCAGTTGTTTCTAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTGAATCTTTGACTCATTTTTATGAATACCAGTTGTTTCTAAG  842

seq1  ACATTCTATAAAATAGAACATCTAAGAGACTAATCTGTCTTTCCACTGCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTATAAAATAGAACATCTAAGAGACTAATCTGTCTTTCCACTGCC  892

seq1  TAATAACTTGCTTTTAAAAATTGTCACAGATGGATGTGGAGAGATGGCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTTGCTTTTAAAAATTGTCACAGATGGATGTGGAGAGATGGCTC  942

seq1  AGGGGTTAAGAGCTCCAGAGGACAGCTTACTTTAAAATAAAAGTATCATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTAAGAGCTCCAGAGGACAGCTTACTTTAAAATAAAAGTATCATC  992

seq1  ATTCAAGACACTACAGTCCCTGTCCTGGAGAAGGACGTAAACCATCTTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGACACTACAGTCCCTGTCCTGGAGAAGGACGTAAACCATCTTTC  1042

seq1  AGTATACCACTGGTAGGGTCACCTTCTCTTCCCAGCACCAATGCAGCAAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACCACTGGTAGGGTCACCTTCTCTTCCCAGCACCAATGCAGCAAG  1092

seq1  AGTTTAATTATAGGATTTGCTAGCCAATCACTGGCTTTGGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATTATAGGATTTGCTAGCCAATCACTGGCTTTGGGAATTC  1138