This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-261M11
Chromosome
6 (Build37)
Map Location
78,117,447 - 78,254,425
singlet/doublet
doublet
Overlap gene
EG434050
Upstream gene
Ctnna2
,
Lrrtm1
,
LOC668169
Downstream gene
Pap
,
Reg3d
,
Reg3a
,
Reg2
,
Reg1
,
Reg3g
,
LOC621716
,
Ppia-ps6_789.1
,
LOC384440
Link
Open Mouse BAC browser
Click to get alignment info.
name
Ctnna2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12386
MGI:88275
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Lrrtm1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74342
MGI:2389173
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC668169
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668169
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
EG434050
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:434050
MGI:3644832
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 271 ESTs, 59 Proteins
name
Pap
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18489
MGI:97478
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Reg3d
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:30053
MGI:1353426
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Reg3a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19694
MGI:109408
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Reg2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19693
MGI:97896
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Reg1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19692
MGI:97895
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Reg3g
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19695
MGI:109406
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC621716
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:621716
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
pseudo
: _no_value
name
Ppia-ps6_789.1
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:606545
definition
note
: peptidylprolyl isomerase A pseudogene 6_789.1
pseudo
: _no_value
name
LOC384440
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:384440
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
Ctnna2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6753295
GeneID:12386
MGI:88275
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: catenin (cadherin associated protein), alpha 2
transcript_id
: NM_009819.1
name
Ctnna2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21918868
GeneID:12386
MGI:88275
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: catenin (cadherin associated protein), alpha 2
transcript_id
: NM_145732.1
name
Lrrtm1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:131888340
GeneID:74342
MGI:2389173
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: leucine rich repeat transmembrane neuronal 1
transcript_id
: NM_028880.3
name
EG434050
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94377520
GeneID:434050
MGI:3644832
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 271 ESTs, 59 Proteins
product
: predicted gene, EG434050
transcript_id
: XM_485792.4
name
Pap
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6754979
GeneID:18489
MGI:97478
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: pancreatitis-associated protein
transcript_id
: NM_011036.1
name
Reg3d
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:21426886
GeneID:30053
MGI:1353426
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: regenerating islet-derived 3 delta
transcript_id
: NM_013893.1
name
Reg3a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6755307
GeneID:19694
MGI:109408
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: regenerating islet-derived 3 alpha
transcript_id
: NM_011259.1
name
Reg2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6677704
GeneID:19693
MGI:97896
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: regenerating islet-derived 2
transcript_id
: NM_009043.1
name
Reg1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6677702
GeneID:19692
MGI:97895
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: regenerating islet-derived 1
transcript_id
: NM_009042.1
name
Reg3g
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6755309
GeneID:19695
MGI:109406
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: regenerating islet-derived 3 gamma
transcript_id
: NM_011260.1
name
Ctnna2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21918869
GeneID:12386
MGI:88275
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005912 - adherens junction [Evidence IDA]; GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0045296 - cadherin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO_process
: GO:0048854 - brain morphogenesis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: isoform 1 is encoded by transcript variant 1; cerebellar deficient folia; alpha N-catenin; alpha(N)-catenin; cadherin associated protein; catenin alpha 2
product
: catenin (cadherin associated protein), alpha 2 isoform 1
protein_id
: NP_663785.1
name
Ctnna2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753296
CCDS:CCDS20250.1
GeneID:12386
MGI:88275
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005912 - adherens junction [Evidence IDA]; GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030027 - lamellipodium [Evidence IDA]
GO_function
: GO:0045296 - cadherin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
GO_process
: GO:0048854 - brain morphogenesis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: isoform 2 is encoded by transcript variant 2; cerebellar deficient folia; alpha N-catenin; alpha(N)-catenin; cadherin associated protein; catenin alpha 2
product
: catenin (cadherin associated protein), alpha 2 isoform 2
protein_id
: NP_033949.1
name
Lrrtm1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27753993
GeneID:74342
MGI:2389173
definition
GO_component
: GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
product
: leucine-rich repeat transmembrane neuronal 1
protein_id
: NP_083156.2
name
EG434050
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51712358
GeneID:434050
MGI:3644832
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_485792.1
name
Pap
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754980
CCDS:CCDS20253.1
GeneID:18489
MGI:97478
definition
GO_function
: GO:0005529 - sugar binding [Evidence IEA]
GO_process
: GO:0006953 - acute-phase response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]
codon_start
: 1
note
: RegIII (beta)
product
: pancreatitis-associated protein
protein_id
: NP_035166.1
name
Reg3d
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21426887
CCDS:CCDS20254.1
GeneID:30053
MGI:1353426
definition
codon_start
: 1
exception
: mismatches in translation
note
: islet neogenesis associated protein-related protein; Reg III delta
product
: regenerating islet-derived 3 delta
protein_id
: NP_038921.1
name
Reg3a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755308
CCDS:CCDS20255.1
GeneID:19694
MGI:109408
definition
GO_function
: GO:0005529 - sugar binding [Evidence IEA]
GO_process
: GO:0006953 - acute-phase response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]
codon_start
: 1
note
: RegIII (alpha); rat generating islet-derived, mouse homolog 3 alpha
product
: regenerating islet-derived 3 alpha
protein_id
: NP_035389.1
name
Reg2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6677705
CCDS:CCDS20256.1
GeneID:19693
MGI:97896
definition
GO_function
: GO:0005529 - sugar binding [Evidence IEA]
codon_start
: 1
note
: pancreatic thread protein; rat regenerating islet-derived, mouse homolog 2
product
: regenerating islet-derived 2
protein_id
: NP_033069.1
name
Reg1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6677703
CCDS:CCDS20257.1
GeneID:19692
MGI:97895
definition
GO_function
: GO:0005529 - sugar binding [Evidence IEA]
codon_start
: 1
note
: pancreatic stone protein; rat regenerating islet-derived, mouse homolog 1
product
: regenerating islet-derived 1
protein_id
: NP_033068.1
name
Reg3g
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755310
CCDS:CCDS20258.1
GeneID:19695
MGI:109406
definition
GO_function
: GO:0005529 - sugar binding [Evidence IEA]
GO_process
: GO:0006953 - acute-phase response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]
codon_start
: 1
note
: RegIII (gamma); rat generating islet-derived, mouse homolog 3 gamma
product
: regenerating islet-derived 3 gamma
protein_id
: NP_035390.1
name
LOC668169
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668169
definition
number
: 1
pseudo
: _no_value
name
LOC621716
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621716
definition
number
: 1
pseudo
: _no_value
name
LOC621716
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621716
definition
number
: 2
pseudo
: _no_value
name
LOC384440
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384440
definition
number
: 1
pseudo
: _no_value
name
LOC384440
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384440
definition
number
: 2
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:165472
definition
standard_name
: AW125451
name
(CDS detail)
type
STS
link
xref
UniSTS:235472
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:130731
definition
standard_name
: D6Mit19
name
(CDS detail)
type
STS
link
xref
UniSTS:186359
definition
standard_name
: G54327
name
(CDS detail)
type
STS
link
xref
UniSTS:130795
definition
standard_name
: D6Mit246
name
(CDS detail)
type
STS
link
xref
UniSTS:186360
definition
standard_name
: G54328
name
(CDS detail)
type
STS
link
xref
UniSTS:125960
definition
standard_name
: mHAa23g11.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:125562
definition
standard_name
: Results_ER_8_28_95_1___172.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:179396
definition
standard_name
: D14010
name
(CDS detail)
type
STS
link
xref
UniSTS:159523
definition
standard_name
: D63361
name
(CDS detail)
type
STS
link
xref
UniSTS:179397
definition
standard_name
: AI449515
name
(CDS detail)
type
STS
link
xref
UniSTS:123943
definition
standard_name
: 31.MMHAP53FRC10.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:130850
definition
standard_name
: D6Mit3
name
(CDS detail)
type
STS
link
xref
UniSTS:124177
definition
standard_name
: 36.MMHAP26FRD12.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:131001
definition
standard_name
: D6Mit98
clone name
MSMg01-526O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-291B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068N07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-324H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-316K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-510K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-498A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384K07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-099C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-212G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080L09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083A05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-289N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455N23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-085N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-054C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291N19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325J15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-360G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-336I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473M19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469J09
singlet/doublet
singlet
plural/unique
unique
clone name
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