BAC Information

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BAC

Clone NameB6Ng01-262B01
Chromosome6 (Build37)
Map Location 110,114,589 - 110,296,125
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B01.bB6Ng01-262B01.g
ACCGA066578GA066579
length1,1171,069
definitionB6Ng01-262B01.b B6Ng01-262B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,294,999 - 110,296,125)(110,114,589 - 110,115,662)
sequence
gaattcctctaaacttagttcagaaccagagtacataaaacttttacttt
tgaacaaaaactgaaagaacatatcttcagaaggtttattatttatgtga
aaccttagtggttgaagcctgaattaaattgtcttagaaatgaaatatgt
ggaaataaaagttatatgtactaaaaataaaagtttaataaactaaaaca
atgtaattttacatgaccttatgcataaaaacatttacagatgagtgttg
gttgtatttttaaaaatctgatgaaaatgtccagtgttcaaatcatttat
gctgtgaaaatttcttcccagggggagactaagcaatagctccttctttc
ccttccattacagtgccaccaaagttcacttgtagaaacggatgaacttg
ccgagcttctttctagaccctaggtgagaggtcacatgcatggttgtggt
tatttctccctgaccattcttagcaatagggatgagggctcccccatagc
tgcacagagctgtcttttaaaattctctgaccccctacctactcaagtcc
caatcttggggaattcagatgtcacattttacaagttatcgtttcagctg
agtttgttgatagtttacacccaaacatagaagggaagaccaagatatga
gatgcaccctctagtatcaagatgagccctgctaactttgcacatcacct
atgatgaggcttgagtatatagagttgaaggaagtctaacggggagttct
gtgcggcaatggcttggctctgaggacagtcactcactacaacttagtaa
tgtgccaagttttcatttacctttgaactgagaagtaatccctttcctga
gtcagcttgttttctccagagtagagtgatgcctattgactacagtatta
gtcacagcagtgctatttgtatggacaaactaaaaccttgagcatcctcc
cttgttaaagggtcaggttaaatgcagaaaaatgtaattcccaattcaga
atttgattctatgtatttatacataccaatgttgagtgtctaggaaggct
aatttactagaaagcaggatagttaccaaaataggcttacattgttagtt
tatatcattagacatgc

gaattccatatctcttctcatacagttatttaccacaacacatatttatc
atgaggccattgtgaacagccattgcaaaggaagctactttaggtaaaag
aatagcaaaatgttcacctttctttttgagtctggtaatgagataaattg
tgtctagacctagaactggcagctctaggagagtgaggcttgaagcctgg
ttttaacatataaagaagactgagaaggcagctggagccttggtttgtcc
tgttaaacagattccctaaactcatcagagacctgagaaggataaatttt
acctgaataaacaggaagtgcagaacaagctcctccaggactactaaaaa
agacatagacttaatggctacctagacagttacccaaagttcctctgtgg
tccatgggacatccacttctggccatcaggacaaaaagaatctgtaagct
caaaaaaaaaaaaaaaaaacaaaaacaaaaaaaaaaacaaaaaacaaaaa
aaaacaaaaacaacaacaacaacaacaaaaacaaaaacaaaaacaaacaa
acaaacaaacaaacaaaaaaaacactcccccaactgggtaactgagatta
aatgttatttgaccctgagtatctcttttgtccaaatgatttgaaagggg
aaaaagttaaacctttcatcttttccattctcatttgagtgagtttctat
gtgaaatgaattttgagttgactctctatataatttcacccctttctttc
ttccaggtaatttccatggataaacaaagtaactcccacttttttttttt
ttttttagacaggagattcttctgtgtggcccttggctatcctgggaact
cactctgtagaccactctggcctcgaacttcaaaaatctgccctgcctct
gcctcccaagtgctaagattaaaagcgtgccaccaccactgccctgcttc
ttctccaacttcttaatgtcatccattcaaggcatagatcagagtattgt
ggggttcacatctgcctacacctcctagaatgctgaatactgatgattca
ctgcagataggtggtattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110294999_110296125
seq2: B6Ng01-262B01.b_43_1159 (reverse)

seq1  GCATGTCTAAAATGATATAAACTAAACATGTAAAGGCTATTTTGTAAACT  50
      ||||||||  |||||||||||||||  |||| ||| ||||||||  ||| 
seq2  GCATGTCT--AATGATATAAACTAACAATGT-AAGCCTATTTTGGTAAC-  46

seq1  TATCTTGCTTTTCTAGTAAA-TAGCCTTTCCTAGGACACTCAACATTGGT  99
      |||| ||| ||||||||||| ||||| |||||| ||||||||||||||||
seq2  TATCCTGC-TTTCTAGTAAATTAGCC-TTCCTA-GACACTCAACATTGGT  93

seq1  ATGGTATAAATACATAGAATTCAAATTCTGAATTTGGGAATTACATTTTT  149
      || |||||||||||||||| |||||||||||| |||||||||||||||||
seq2  AT-GTATAAATACATAGAA-TCAAATTCTGAA-TTGGGAATTACATTTTT  140

seq1  CTGCATTTAACCTGACCCCTTTAACAAGGGAGGATGCTCAAGGTTTTAGT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCATTTAACCTGA-CCCTTTAACAAGGGAGGATGCTCAAGGTTTTAGT  189

seq1  TTGTCCATACAAATAGCACTGCTGTGACTAATACTGTAGTCAATAGGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATACAAATAGCACTGCTGTGACTAATACTGTAGTCAATAGGCAT  239

seq1  CACTCTACTCTGGAGAAAACAAGCTGACTCAGGAAAGGGATTACTTCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACTCTGGAGAAAACAAGCTGACTCAGGAAAGGGATTACTTCTCA  289

seq1  GTTCAAAGGTAAATGAAAACTTGGCACATTACTAAGTTGTAGTGAGTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGGTAAATGAAAACTTGGCACATTACTAAGTTGTAGTGAGTGAC  339

seq1  TGTCCTCAGAGCCAAGCCATTGCCGCACAGAACTCCCCGTTAGACTTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGAGCCAAGCCATTGCCGCACAGAACTCCCCGTTAGACTTCCT  389

seq1  TCAACTCTATATACTCAAGCCTCATCATAGGTGATGTGCAAAGTTAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTATATACTCAAGCCTCATCATAGGTGATGTGCAAAGTTAGCAG  439

seq1  GGCTCATCTTGATACTAGAGGGTGCATCTCATATCTTGGTCTTCCCTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCTTGATACTAGAGGGTGCATCTCATATCTTGGTCTTCCCTTCT  489

seq1  ATGTTTGGGTGTAAACTATCAACAAACTCAGCTGAAACGATAACTTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGGTGTAAACTATCAACAAACTCAGCTGAAACGATAACTTGTAA  539

seq1  AATGTGACATCTGAATTCCCCAAGATTGGGACTTGAGTAGGTAGGGGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACATCTGAATTCCCCAAGATTGGGACTTGAGTAGGTAGGGGGTC  589

seq1  AGAGAATTTTAAAAGACAGCTCTGTGCAGCTATGGGGGAGCCCTCATCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTTTAAAAGACAGCTCTGTGCAGCTATGGGGGAGCCCTCATCCC  639

seq1  TATTGCTAAGAATGGTCAGGGAGAAATAACCACAACCATGCATGTGACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTAAGAATGGTCAGGGAGAAATAACCACAACCATGCATGTGACCT  689

seq1  CTCACCTAGGGTCTAGAAAGAAGCTCGGCAAGTTCATCCGTTTCTACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTAGGGTCTAGAAAGAAGCTCGGCAAGTTCATCCGTTTCTACAAG  739

seq1  TGAACTTTGGTGGCACTGTAATGGAAGGGAAAGAAGGAGCTATTGCTTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGGTGGCACTGTAATGGAAGGGAAAGAAGGAGCTATTGCTTAG  789

seq1  TCTCCCCCTGGGAAGAAATTTTCACAGCATAAATGATTTGAACACTGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTGGGAAGAAATTTTCACAGCATAAATGATTTGAACACTGGAC  839

seq1  ATTTTCATCAGATTTTTAAAAATACAACCAACACTCATCTGTAAATGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCAGATTTTTAAAAATACAACCAACACTCATCTGTAAATGTTT  889

seq1  TTATGCATAAGGTCATGTAAAATTACATTGTTTTAGTTTATTAAACTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATAAGGTCATGTAAAATTACATTGTTTTAGTTTATTAAACTTTT  939

seq1  ATTTTTAGTACATATAACTTTTATTTCCACATATTTCATTTCTAAGACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTACATATAACTTTTATTTCCACATATTTCATTTCTAAGACAA  989

seq1  TTTAATTCAGGCTTCAACCACTAAGGTTTCACATAAATAATAAACCTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCAGGCTTCAACCACTAAGGTTTCACATAAATAATAAACCTTCT  1039

seq1  GAAGATATGTTCTTTCAGTTTTTGTTCAAAAGTAAAAGTTTTATGTACTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATGTTCTTTCAGTTTTTGTTCAAAAGTAAAAGTTTTATGTACTC  1089

seq1  TGGTTCTGAACTAAGTTTAGAGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  TGGTTCTGAACTAAGTTTAGAGGAATTC  1117


seq1: chr6_110114589_110115662
seq2: B6Ng01-262B01.g_64_1132

seq1  GAATTCCATATCTCTTCTCATACAGTTATTTACCACAACACATATTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCTCTTCTCATACAGTTATTTACCACAACACATATTTATC  50

seq1  ATGAGGCCATTGTGAACAGCCATTGCAAAGGAAGCTACTTTAGGTAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCATTGTGAACAGCCATTGCAAAGGAAGCTACTTTAGGTAAAAG  100

seq1  AATAGCAAAATGTTCACCTTTCTTTTTGAGTCTGGTAATGAGATAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAAATGTTCACCTTTCTTTTTGAGTCTGGTAATGAGATAAATTG  150

seq1  TGTCTAGACCTAGAACTGGCAGCTCTAGGAGAGTGAGGCTTGAAGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGACCTAGAACTGGCAGCTCTAGGAGAGTGAGGCTTGAAGCCTGG  200

seq1  TTTTAACATATAAAGAAGACTGAGAAGGCAGCTGGAGCCTTGGTTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATATAAAGAAGACTGAGAAGGCAGCTGGAGCCTTGGTTTGTCC  250

seq1  TGTTAAACAGATTCCCTAAACTCATCAGAGACCTGAGAAGGATAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACAGATTCCCTAAACTCATCAGAGACCTGAGAAGGATAAATTTT  300

seq1  ACCTGAATAAACAGGAAGTGCAGAACAAGCTCCTCCAGGACTACTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATAAACAGGAAGTGCAGAACAAGCTCCTCCAGGACTACTAAAAA  350

seq1  AGACATAGACTTAATGGCTACCTAGACAGTTACCCAAAGTTCCTCTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGACTTAATGGCTACCTAGACAGTTACCCAAAGTTCCTCTGTGG  400

seq1  TCCATGGGACATCCACTTCTGGCCATCAGGACAAAAAGAATCTGTAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGACATCCACTTCTGGCCATCAGGACAAAAAGAATCTGTAAGCT  450

seq1  CAAAAAAAAAAAAAAAAAACAAAAACAAAAAAAAAAACAAAAAACAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAACAAAAACAAAAAAAAAAACAAAAAACAAAAA  500

seq1  AAAACAAAAACAACAACAACAACAACAAAAACAAAAACAAAAACAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAACAACAACAACAACAAAAACAAAAACAAAAACAAACAA  550

seq1  ACAAACAAACAAACAAAAAAAACACTCCCCCAACTGGGTAACTGAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAAAAAAACACTCCCCCAACTGGGTAACTGAGATTA  600

seq1  AATGTTATTTGACCCTGAGTATCTCTTTTGTCCAAATGATTTGAAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTGACCCTGAGTATCTCTTTTGTCCAAATGATTTGAAAGGGG  650

seq1  AAAAAGTTAAACCTTTCATCTTTTCCATTCTCATTTGAGTGAGTTTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAAACCTTTCATCTTTTCCATTCTCATTTGAGTGAGTTTCTAT  700

seq1  GTGAAATGAATTTTGAGTTGACTCTCTATATAATTTCACCCCTTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGAATTTTGAGTTGACTCTCTATATAATTTCACCCCTTTCTTTC  750

seq1  TTCCAGGTAATTTCCATGGATAAACAAAGTAACTCCCACTTTTTTTTTTT  800
      |||||||||||||||||||||||||||||||||||||||      |||||
seq2  TTCCAGGTAATTTCCATGGATAAACAAAGTAACTCCCAC------TTTTT  794

seq1  TTTTTTTTTTTTTGACAGG-GATTC-TCTGTGTGG-CCTTGGCTATCCT-  846
      |||||||||||| |||||| ||||| ||||||||| ||||||||||||| 
seq2  TTTTTTTTTTTTAGACAGGAGATTCTTCTGTGTGGCCCTTGGCTATCCTG  844

seq1  GGAACTCACTCTGTAGACCACTCTGGCCTCGAAC-TCAAAAATCTG-CCT  894
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  GGAACTCACTCTGTAGACCACTCTGGCCTCGAACTTCAAAAATCTGCCCT  894

seq1  GCCTCTGCCTCCCAAGTGCTAAGATTAAAAGCGTG-CACCACCACTGCCC  943
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTAAGATTAAAAGCGTGCCACCACCACTGCCC  944

seq1  TGCTTC-TCTCCAACTTCTTAATGTCATCCATTC-AGGCATAGATCAGAG  991
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCTTCTTCTCCAACTTCTTAATGTCATCCATTCAAGGCATAGATCAGAG  994

seq1  GTAATTGTGGGGTTCCACATCTGCTTACAACCTCCCTAGAAATGCTGAAT  1041
         ||||||||||| ||||||||| ||| |||| ||||| ||||||||||
seq2  --TATTGTGGGGTT-CACATCTGCCTAC-ACCT-CCTAG-AATGCTGAAT  1038

seq1  ACTGATGATTTCACTGAAAGATAGGTGGTATTC  1074
      |||||||| |||||||  |||||||||||||||
seq2  ACTGATGA-TTCACTG-CAGATAGGTGGTATTC  1069


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