BAC Information

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BAC

Clone NameB6Ng01-262E09
Chromosome2 (Build37)6 (Build37)
Map Location 14,220,345 - 14,220,676120,985,563 - 120,986,620
singlet/doubletsingletsinglet
Overlap geneMrc1
Upstream geneCubn, Trdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik
Downstream geneSlc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262E09.bB6Ng01-262E09.g
ACCGA066733GA066734
length1,0811,062
definitionB6Ng01-262E09.b B6Ng01-262E09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,220,345 - 14,220,676)(120,985,563 - 120,986,620)
sequence
gaattccttttccctcccttggtgacccttggttcagctgttcgatctcc
ccaagttcttttcttccatctaacaatctgatatgagcctctatggccct
tcccatcaaaggggatgttattgtgcctcataagcatgctatgaataaat
gaaaaatgatttcattattgtatactgtcttagtcagggtttctattcct
gcacaaacatccctaccaacaagcaagttggggaggaaaggggattttcg
ccttacttttcctcacagatgttgatcaccaaagtcaggtctaaaactca
aagcaggtcaggaagcaggagctgatgcagaagacatgcagggatgttac
tgggttgattcccgtggtttcccatcctgctatctttcgtgcgttctttc
tttctttctttctttctttctttctttatttctttctttctttttttcaa
gacggggtttctctgtgtagcctgggatactatggaaactgctttgtata
ccaggctggactcgaaatcgtaaatctgcctgcctctgcctccattctca
tctggctctcgtatatcaacccagaactaccacctcttggatggcacctc
ccacaatgggctggtccctcctattctagatcgatcagagaaaaaaatgc
cttcttctgaatctgttgggagcatttcctctaggaaggtgattttctct
gtgatgactccgtctcggggcccgttaacgagtctagccaacgggtacat
atatcttgtacattttctcaaagaaccaactcctccttggttaattcttt
gaatagttctttcttgtttccacttggtgatttcatccctgaatttgatt
atttcctgccgtctactcctcttgggtgaatttgcttcctttttttctag
agatttagatgtgtgcaagctgctagaatgtgctctctcccgattctcat
ggaagcactcagagctatgaatttccttctagaaatgctttcttttgtgt
ccaaaggattgggaacacttgtgggcttcattttcagtaaactcagaaaa
agtctttaatttctttcctttattccctcct
gaattctcgatctgccttctgcttgcaggtattgacttgtagaatctcat
ctactgctttcacgacacacactactttgtcctggcggccaaaaagctta
gtttgctggatagggggtgatcctgcatgtgagcaatggcttcctttcag
gccacgctttttgttgagctgcttgatataatcactgggaagaattttat
attctgatggggttgttttttcttccctgtaagggaagaaaaatgacact
gaactatctggaaaccgatgctacttattagtttaacttaaaaagtattc
ttattatttataaaagtgcaaatataaactggatgaggaggagaggagaa
agggactttgcacccctgattatgactagccctgacactgccaacacggc
ctatattgtttggataagcccaacctcttcctctctcccctcttctgctt
ggtgactattttagagcggctgtagactttcacatcatatataattagcc
agtttaactttaggtagcctgatttacagttatagcaaattgcttaacct
atggccttgcacattgctcgccaagagctctgccatgagctacctcccta
gacttttttttttttaaagaagtatttcatttttgaaacaggctcttact
aagtagcttggtctggccttgaaatagctccataccccacgcaagccttg
aacatggaggcctcatcttttggagggcctgaggacaagtgttgagccaa
gaagctgcacttggagttacagtggcttgatggagactcaggttttccac
aaatgtggttgctgaagacacagttatttaaggctttttctaattgacaa
cagacgcctggatgtctctccttagccaggttcctgcctagtcctttgtc
tgagtgactattgcatgatatacccctggagctgaagacctttaatctaa
atcacaggctgggcttccttaaggatcgtggattgtctctctgtgcactt
cacagaatcgggatgcgagaaatttactgtctctatgcgattaatgtaaa
taaaaggcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_14220345_14220676
seq2: B6Ng01-262E09.b_792_1121 (reverse)

seq1  AGGAAGGAATAAA-GAAAGAAATTAAAGACTTTTT-AGAGTTTAATGAAA  48
      |||| |||||||| |||||||||||||||||||||  ||||||| |||||
seq2  AGGAGGGAATAAAGGAAAGAAATTAAAGACTTTTTCTGAGTTTACTGAAA  50

seq1  ATGAAG-CCACAA-CGTACCCAAACCTTTGGGACAC-AATGAAAGCATTT  95
      |||||| ||||||  || ||||| ||||| |||||| || ||||||||||
seq2  ATGAAGCCCACAAGTGTTCCCAATCCTTT-GGACACAAAAGAAAGCATTT  99

seq1  CTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCATGAAGAAACGGGAGAG  145
      || ||| ||||| |||||||||||||||| |||||| |||| ||||||||
seq2  CT-AGAAGGAAATTCATAGCTCTGAGTGCTTCCATG-AGAATCGGGAGAG  147

seq1  AGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGG  195
      ||||||| |||||||||||   |||||||| ||| |||||||||||||||
seq2  AGCACATTCTAGCAGCTTG--CACACATCT-AAATCTCTAGAAAAAAAGG  194

seq1  AAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGG  245
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAATTCAGG  244

seq1  GGTGAAATCAACCAAGTGGAAACAAG-AAGAACTATTCAAAGAATTAACC  294
      | ||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  GATGAAATC-ACCAAGTGGAAACAAGAAAGAACTATTCAAAGAATTAACC  293

seq1  AAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATA  332
       || ||||||||||||||||||||||||  ||||||||
seq2  -AAGGAGGAGTTGGTTCTTTGAGAAAATGTACAAGATA  330

seq1: chr6_120985563_120986620
seq2: B6Ng01-262E09.g_65_1126 (reverse)

seq1  TGAGGCCTCTTCTATCCATTCATCGCATGGAGACAGT-AATTTCTCACAT  49
      |||||||| || | | |||| ||||||| |||||||| |||||||| |||
seq2  TGAGGCCTTTTATTTACATTAATCGCATAGAGACAGTAAATTTCTCGCAT  50

seq1  CCCGA-TCTGTG-AGAGCAACAGAGAGAC-AGCCACGATCCTTAAGGA--  94
      ||||| |||||| || || |||||||||| | ||||||||||||||||  
seq2  CCCGATTCTGTGAAGTGC-ACAGAGAGACAATCCACGATCCTTAAGGAAG  99

seq1  GCCAGCCTGTGATTTAGATTTCAAGTCTTCAGCTC--AGGGTATATCATG  142
       |||||||||||||||||||  | |||||||||||   ||||||||||||
seq2  CCCAGCCTGTGATTTAGATTAAAGGTCTTCAGCTCCAGGGGTATATCATG  149

seq1  CAATTAGTCACTCAGACAAAGGACTGAGCTGGAA-CTGGCTAAGGAGAGA  191
      ||| |||||||||||||||||||||  || |||| |||||||||||||||
seq2  CAA-TAGTCACTCAGACAAAGGACTAGGCAGGAACCTGGCTAAGGAGAGA  198

seq1  CA-CCAGGCCTCTGTTGTCAATTAGAAAAAGCCTCAAATAACTGTCTCCT  240
      || |||||| |||||||||||||||||||||||| |||||||||| || |
seq2  CATCCAGGCGTCTGTTGTCAATTAGAAAAAGCCTTAAATAACTGTGTCTT  248

seq1  CAGCAACCACATTTGTGACAAAACCTGAGTCTCCATCAAGCCACTGTAAA  290
      |||||||||||||||||  |||||||||||||||||||||||||||| ||
seq2  CAGCAACCACATTTGTG-GAAAACCTGAGTCTCCATCAAGCCACTGT-AA  296

seq1  CTCCAAGTGCAGCTTCTTGGCTCAACACTTGTCCCCAGGCCCTCCAAAAG  340
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCCAAGTGCAGCTTCTTGGCTCAACACTTGTCCTCAGGCCCTCCAAAAG  346

seq1  ATGAGGCCTCCATGTTCAAGGCTTGCCTGGGCTATGGAGCTATTTCAAGG  390
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  ATGAGGCCTCCATGTTCAAGGCTTGCGTGGGGTATGGAGCTATTTCAAGG  396

seq1  CCAGACCAAGCTACTTAGTAAGAGCCTGTTTCAAAAA-GAAATACTTCTT  439
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAGACCAAGCTACTTAGTAAGAGCCTGTTTCAAAAATGAAATACTTCTT  446

seq1  TAAAAAAAAAAAAGTCTAGGGAGGTAGCTCATGGCAGAGCTCTTGGCTAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAAAAAAAAAAAGTCTAGGGAGGTAGCTCATGGCAGAGCTCTTGGCGAG  496

seq1  CAATGTGCAAGGCCTTCGGTTATGCAATTTGCTATAACTGTAAATCAGGC  539
      |||||||||||||| | ||||| |||||||||||||||||||||||||||
seq2  CAATGTGCAAGGCCATAGGTTAAGCAATTTGCTATAACTGTAAATCAGGC  546

seq1  TACCTAAAGTTAAACTGGCTAATTATATATGATGTGAAAGCTGACAGCTG  589
      ||||||||||||||||||||||||||||||||||||||||   ||||| |
seq2  TACCTAAAGTTAAACTGGCTAATTATATATGATGTGAAAGTCTACAGCCG  596

seq1  CTCTAAAATAGTCACCAAGCAGAAGAGGGGAGAGAGGAAGAGGTTGGGCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATAGTCACCAAGCAGAAGAGGGGAGAGAGGAAGAGGTTGGGCT  646

seq1  TATCCAAACAATATTGGCCGTGTTGGCCGTGTCAGGGCTAGTCATAATCA  689
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TATCCAAACAATATAGGCCGTGTTGGCAGTGTCAGGGCTAGTCATAATCA  696

seq1  TGGCTGCAAAGGCCCTTTCTCCTCTCCTCCTCCTCCTGTTTATAGTTGCA  739
       || ||||||| |||||||||||||||||||| ||| ||||||| |||||
seq2  GGGGTGCAAAGTCCCTTTCTCCTCTCCTCCTCATCCAGTTTATATTTGCA  746

seq1  CTTTTCTAAATAATAAGAATACTTTTTAAGTTAAACTAATAAGTAGCATC  789
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAAATAATAAGAATACTTTTTAAGTTAAACTAATAAGTAGCATC  796

seq1  GGTTTCCAGATGTGTTCAGTGTCATTTTTCTTCCCTTACAGGGAAGAAAA  839
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCAGAT-AGTTCAGTGTCATTTTTCTTCCCTTACAGGGAAGAAAA  845

seq1  AACAACCCCATCAGAATATAAAATTCTTCCCAGTGATTCTATCAAGCAGC  889
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACAACCCCATCAGAATATAAAATTCTTCCCAGTGATTATATCAAGCAGC  895

seq1  TCAACAAAAACTGTTGCCTGAAAGGAAGCCATTGCTCACATGCAGGATCA  939
      ||||||||||  || |||||||||||||||||||||||||||||||||||
seq2  TCAACAAAAAGCGTGGCCTGAAAGGAAGCCATTGCTCACATGCAGGATCA  945

seq1  CCCCCTTGTCCAGCAAACTCTGCTTTTTGGCCGTCATGACAAAGTAGTGT  989
      ||||| | |||||||||||  |||||||||||| || |||||||||||||
seq2  CCCCC-TATCCAGCAAACTAAGCTTTTTGGCCGCCAGGACAAAGTAGTGT  994

seq1  GTGTCATCTTTGTAGTAGACGATGTTCTCTAAGTCAATACCTGCAAGCAG  1039
      ||||| |    | |||||| ||  ||||  ||||||||||||||||||||
seq2  GTGTCGTGAAAGCAGTAGATGAGATTCTACAAGTCAATACCTGCAAGCAG  1044

seq1  AAGACAGATGTGAGAATTC  1058
      ||| |||||  ||||||||
seq2  AAGGCAGAT-CGAGAATTC  1062