BAC Information

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BAC

Clone NameB6Ng01-262I09
Chromosome6 (Build37)
Map Location 143,060,614 - 143,190,035
singlet/doubletdoublet
Overlap gene5730419I09Rik, Etnk1
Upstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056
Downstream geneD6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262I09.bB6Ng01-262I09.g
ACCGA066916GA066917
length1,1341,131
definitionB6Ng01-262I09.b B6Ng01-262I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,060,614 - 143,061,832)(143,188,916 - 143,190,035)
sequence
gaattctttcctttgagaaggcaagagcaacgtaaccactgcatcagaaa
catcaatgacacaagagaccaacgacctcctcatgtgtgtctcgagcctc
tagcacaggataagtgcgtgcgggcctcccagatgccgtcactaaaagcg
tggagtcggcccaagttcacattccatccacacagcagctggaagagaca
gaagccctccttcctatttgcctttcagcattgctctcatcatgacattc
ctgttatcttcaaatccctgatgggagagcatcttgcaaaatgatagtac
atacatctttacttcatagttctaggtttaaaagaatttttttttttttt
ttttgctattgcacacctgctgattagttaactaggtggcttcgtcagcc
agtagggcaatttgcccagggatacataacttggattcgttgctttaatc
atgtgcagaactccagagttatgagcttatagaggcttgtaccagggttc
agagaaaagccactggtccttggcagtgtgttgtagcaaggaaggaagac
acccgcatccccggaacacagataggactactgagaccaacgcgtggagc
tgtaaggcaaagcccacagctttgtggagactccaaaacactggacatgc
caggaacatgggaagtctgctgggaaaagctacaaatacaaaatgaaccc
agcctagaagaggccattattcacactgtgctatggtcatacgcaacaca
catgtaggctgctttttacttcaaggaaatgacagcaacgagtttgcctc
gattctcagaaggtgctttgaactcttgaacagtcttgagcctaagactg
tgggggcgactttccaaagttgagctgttaatgtttaactgtgaagtgtc
ctgctcatcttatttatatattttaggacagtatattacctgaatgtcct
cactcacctatttgaataacttggtttccagcagggagtggcccactctc
caagccacctacccataatctgctcttgctgttgaaggactgttctacta
aacttgggtgacaaaactcctcaatctcttcctcacggtctttccatctt
tctcaaccttccctctcttcccacctttcttcct
gaattccagagtccaggtatttccgtcagccctatcactgctacttaatg
ggttttaactatgcaccctaacagtatgcttggtaattctttcttggact
tattttttaatgtgctgaacagaaattctaatgacaggtgagctattttg
gggggcttacagttgccagagtcagctaagttatgaaaacagtagggtac
taaagttgaacagggagggacacagacgaactttgtatctgatattcttc
atgctgaccgaacattgaccaggaacagtgggagtgggagagtttacgtt
aactcttggttcagggaattcagaccatgagggaggacctagcaggagag
tctccagcagctgtctgtgagggagcttgatccggtctgagcggctctgg
aagcacggctctggaagcaggaatcgatgattgaaagttgaattgaacgc
tcgctcagtaagctttctcctttctccttttcattcagccctcgggatgg
tggccctcaacgttcagggtagatcatcttccctcagctacacctctcta
gagacatcttcactgacaccctaggccatgcttctctaattgcacgggtg
ttattaaatcaaatcaagttgacaataaaaaaaaattaacatttcagatt
ctatttatttggaaatcctgttaccaaaataccacaagagctggacacat
gactccacagaaaatagtgtctgtggtcaagctttatgacgcgagttcga
ttccagggaaccacgaggtaaagggaaaaaaccaactccctgaagttgtc
cactgatttcaagtatgccatgccgtggcacaggtgtgcacaataaacac
atacatgcaaacaaacaaacaaacgcatgtaatttttaaagttttttttt
taagtacaacaaaactgcctcatgggtcctaagaaaacttgggaaaagta
ttcatttttaggtgtagatgtaatgtgactgtcagtgttccgtaaattct
ttttctgagcgctatctaggtaaaaggtaggaggcattgttatgagaata
aaatgaagggcgttttgcaccagctcagtggggaaagacagagtcctgaa
agagatttgttcataataaggatgaagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143060614_143061832
seq2: B6Ng01-262I09.b_48_1181

seq1  GAATTCTTTCCTTTGAGAAGGCAAGAGCAACGTAACCACTGCATCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTTGAGAAGGCAAGAGCAACGTAACCACTGCATCAGAAA  50

seq1  CATCAATGACACAAGAGACCAACGACCTCCTCATGTGTGTCTCGAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGACACAAGAGACCAACGACCTCCTCATGTGTGTCTCGAGCCTC  100

seq1  TAGCACAGGATAAGTGCGTGCGGGCCTCCCAGATGCCGTCACTAAAAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGGATAAGTGCGTGCGGGCCTCCCAGATGCCGTCACTAAAAGCG  150

seq1  TGGAGTCGGCCCAAGTTCACATTCCATCCACACAGCAGCTGGAAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCGGCCCAAGTTCACATTCCATCCACACAGCAGCTGGAAGAGACA  200

seq1  GAAGCCCTCCTTCCTATTTGCCTTTCAGCATTGCTCTCATCATGACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTCCTTCCTATTTGCCTTTCAGCATTGCTCTCATCATGACATTC  250

seq1  CTGTTATCTTCAAATCCCTGATGGGAGAGCATCTTGCAAAATGATAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCTTCAAATCCCTGATGGGAGAGCATCTTGCAAAATGATAGTAC  300

seq1  ATACATCTTTACTTCATAGTTCTAGGTTTAAAAGAATTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTTTACTTCATAGTTCTAGGTTTAAAAGAATTTTTTTTTTTTTT  350

seq1  TTTTGCTATTGCACACCTGCTGATTAGTTAACTAGGTGGCTTCGTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATTGCACACCTGCTGATTAGTTAACTAGGTGGCTTCGTCAGCC  400

seq1  AGTAGGGCAATTTGCCCAGGGATACATAACTTGGATTCGTTGCTTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCAATTTGCCCAGGGATACATAACTTGGATTCGTTGCTTTAATC  450

seq1  ATGTGCAGAACTCCAGAGTTATGAGCTTATAGAGGCTTGTACCAGGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGAACTCCAGAGTTATGAGCTTATAGAGGCTTGTACCAGGGTTC  500

seq1  AGAGAAAAGCCACTGGTCCTTGGCAGTGTGTTGTAGCAAGGAAGGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGCCACTGGTCCTTGGCAGTGTGTTGTAGCAAGGAAGGAAGAC  550

seq1  ACCCGCATCCCCGGAACACAGATAGGACTACTGAGACCAACGCGTGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCATCCCCGGAACACAGATAGGACTACTGAGACCAACGCGTGGAGC  600

seq1  TGTAAGGCAAAGCCCACAGCTTTGTGGAGACTCCAAAACACTGGACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCAAAGCCCACAGCTTTGTGGAGACTCCAAAACACTGGACATGC  650

seq1  CAGGAACATGGGAAGTCTGCTGGGAAAAGCTACAAATACAAAATGAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATGGGAAGTCTGCTGGGAAAAGCTACAAATACAAAATGAACCC  700

seq1  AGCCTAGAAGAGGCCATTATTCACACTGTGCTATGGTCATACGCAACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAAGAGGCCATTATTCACACTGTGCTATGGTCATACGCAACACA  750

seq1  CATGTAGGCTGCTTTTTACTTCAAGGAAATGACAGCAACGAGTTTGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGCTGCTTTTTACTTCAAGGAAATGACAGCAACGAGTTTGCCTC  800

seq1  GATTCTCAGAAGGTGCTTTGAACTCTTGAACAGTCTTGAGCCTAAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCAGAAGGTGCTTTGAACTCTTGAACAGTCTTGAGCCTAAGACTG  850

seq1  TGGGGGCGAC-TTCCAAAGTTGAGCTGTTAATGTTTAACTGTGAAGTGTC  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCGACTTTCCAAAGTTGAGCTGTTAATGTTTAACTGTGAAGTGTC  900

seq1  CTGCTCATC-TATTTATATATTT--AGACAGTATATTACCTGAATGTCCT  946
      ||||||||| |||||||||||||   ||||||||||||||||||||||||
seq2  CTGCTCATCTTATTTATATATTTTAGGACAGTATATTACCTGAATGTCCT  950

seq1  CACTCACCTATTTGAAT-ACTTGGTTCCCAGCAGGGAGTGG-CCACTCTC  994
      ||||||||||||||||| |||||||| |||||||||||||| ||||||||
seq2  CACTCACCTATTTGAATAACTTGGTTTCCAGCAGGGAGTGGCCCACTCTC  1000

seq1  CAAGCCCACTA-CCAT-ATCTGCTC-TGCTGTTG-AGGACTGTTCTTACT  1040
      ||||||  ||| |||| |||||||| |||||||| |||||||||| ||||
seq2  CAAGCCACCTACCCATAATCTGCTCTTGCTGTTGAAGGACTGTTC-TACT  1049

seq1  AAAC-TGTGTGACAAAAACCTTCCTCCATCTTCCTTCCTTCCATCGTTCT  1089
      |||| || |||||||||    ||||| ||||  ||||||  || || |||
seq2  AAACTTGGGTGACAAAA---CTCCTCAATCT--CTTCCT--CA-CGGTCT  1091

seq1  TTCCATCTTTCTTCCATCCTTCTCCTTCCTTCTTCCCATCCTTCTTCCTC  1139
      ||||||||||||  || ||||| |||    |||||||| | |||||||| 
seq2  TTCCATCTTTCT--CAACCTTC-CCT---CTCTTCCCACCTTTCTTCCT-  1134

seq1  CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT  1189
                                                        
seq2  --------------------------------------------------  1134

seq1  CTCCCTCTCTTCCTCCCTCCTTTCCTTCCT  1219
                                    
seq2  ------------------------------  1134

seq1: chr6_143188916_143190035
seq2: B6Ng01-262I09.g_68_1198 (reverse)

seq1  AGTGCTCTATCCTAATTATGGACAAATCTC--TCAGGACTCTGTCTCT-C  47
      ||||||  ||||| |||||| |||||||||  |||||||||||||| | |
seq2  AGTGCTTCATCCTTATTATGAACAAATCTCTTTCAGGACTCTGTCTTTCC  50

seq1  CCACTGGGCTGCTGC-AAACGCCCTTCCTTTTATCTTCATAAC-ATGCCT  95
      |||||| |||| ||| ||||||||||| ||||||  ||||||| ||||||
seq2  CCACTGAGCTGGTGCAAAACGCCCTTCATTTTATTCTCATAACAATGCCT  100

seq1  CCTACC-TTTACCTAGATAGCGCTCAG-AAAAGAATTTAACGAACACTGA  143
      |||||| |||||||||||||||||||| |||||||||||  |||||||||
seq2  CCTACCTTTTACCTAGATAGCGCTCAGAAAAAGAATTTACGGAACACTGA  150

seq1  CAGTCACA-TACATCTACACCT-AAAATGAATACTTTT-CCAAGTTTTCT  190
      |||||||| ||||||||||||| ||||||||||||||| |||||||||||
seq2  CAGTCACATTACATCTACACCTAAAAATGAATACTTTTCCCAAGTTTTCT  200

seq1  TAGGA-CCATGAGGCAGTTTTGTTGTACTTAAAAAAAAAACTTTAAAAAT  239
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCCATGAGGCAGTTTTGTTGTACTTAAAAAAAAAACTTTAAAAAT  250

seq1  TACATGCGTTTGTTTGTTTGTTTGCATGTATGTGTTTATTGTGCACACCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCGTTTGTTTGTTTGTTTGCATGTATGTGTTTATTGTGCACACCT  300

seq1  GTGCCACGGCATGGCATACTTGAAATCAGTGGACAACTTCAGGGAGTTGG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACGGCATGGCATACTTGAAATCAGTGGACAACTTCAGGGAGTTGG  350

seq1  TTTTTTCCCTTTACCTCGTGGTTCCCTGGAATCGAACTCGCGTCATAAAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCTTTACCTCGTGGTTCCCTGGAATCGAACTCGCGTCATAAAG  400

seq1  CTTGACCACAGACACTATTTTCTGTGGAGTCATGTGTCCAGCTCTTGTGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCACAGACACTATTTTCTGTGGAGTCATGTGTCCAGCTCTTGTGG  450

seq1  TATTTTGGTAACAGGATTTCCAAATAAATAGAATCTGAAATGTTAATTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTAACAGGATTTCCAAATAAATAGAATCTGAAATGTTAATTTT  500

seq1  TTTTTATTGTCAACTTGATTTGATTTAATAACACCCGTGCAATTAGAGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGTCAACTTGATTTGATTTAATAACACCCGTGCAATTAGAGAA  550

seq1  GCATGGCCTAGGGTGTCAGTGAAGATGTCTCTAGAGAGGTGTAGCTGAGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCTAGGGTGTCAGTGAAGATGTCTCTAGAGAGGTGTAGCTGAGG  600

seq1  GAAGATGATCTACCCTGAACGTTGAGGGCCACCATCCCGAGGGCTGAATG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATCTACCCTGAACGTTGAGGGCCACCATCCCGAGGGCTGAATG  650

seq1  AAAAGGAGAAAGGAGAAAGCTTACTGAGCGAGCGTTCAATTCAACTTTCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGAAAGGAGAAAGCTTACTGAGCGAGCGTTCAATTCAACTTTCA  700

seq1  ATCATCGATTCCTGCTTCCAGAGCCGTGCTTCCAGAGCCGCTCAGACCGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCGATTCCTGCTTCCAGAGCCGTGCTTCCAGAGCCGCTCAGACCGG  750

seq1  ATCAAGCTCCCTCACAGACAGCTGCTGGAGACTCTCCTGCTAGGTCCTCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTCCCTCACAGACAGCTGCTGGAGACTCTCCTGCTAGGTCCTCC  800

seq1  CTCATGGTCTGAATTCCCTGAACCAAGAGTTAACGTAAACTCTCCCACTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTCTGAATTCCCTGAACCAAGAGTTAACGTAAACTCTCCCACTC  850

seq1  CCACTGTTCCTGGTCAATGTTCGGTCAGCATGAAGAATATCAGATACAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTCCTGGTCAATGTTCGGTCAGCATGAAGAATATCAGATACAAA  900

seq1  GTTCGTCTGTGTCCCTCCCTGTTCAACTTTAGTACCCTACTGTTTTCATA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTCTGTGTCCCTCCCTGTTCAACTTTAGTACCCTACTGTTTTCATA  950

seq1  ACTTAGCTGACTCTGGCAACTGTAAGCCCCCCAAAATAGCTCACCTGTCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTGACTCTGGCAACTGTAAGCCCCCCAAAATAGCTCACCTGTCA  1000

seq1  TTAGAATTTCTGTTCAGCACATTAAAAAATAAGTCCAAGAAAGAATTACC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTCTGTTCAGCACATTAAAAAATAAGTCCAAGAAAGAATTACC  1050

seq1  AAGCATACTGTTAGGGTGCATAGTTAAAACCCATTAAGTAGCAGTGATAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACTGTTAGGGTGCATAGTTAAAACCCATTAAGTAGCAGTGATAG  1100

seq1  GGCTGACGGAAATACCTGGACTCTGGAATTC  1120
      |||||||||||||||||||||||||||||||
seq2  GGCTGACGGAAATACCTGGACTCTGGAATTC  1131