BAC Information

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BAC

Clone NameB6Ng01-262J10
Chromosome6 (Build37)
Map Location 111,127,452 - 111,208,036
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J10.bB6Ng01-262J10.g
ACCGA066965GA066966
length1,070440
definitionB6Ng01-262J10.b B6Ng01-262J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,206,969 - 111,208,036)(111,127,452 - 111,127,891)
sequence
gaattcctatttattcttatcagctctttcaaatgattaaattcacacta
atgatgaaaggtttacacacagtggccttctatccagacagcatagctca
atagccatgtcatttgaatttaccatctgtcattctcgtcaaaatggccc
tgtatgtgccttagttgccaacgcttatacttcttatgcaacccaagagt
aaactgagacatccttgtgaaacttgggtgaccaaccctctcactctaac
acgctacccttagtgtcataaagtgtaataaaaaatgctcatttaatgcc
aggacagagatctccagtcctcctcccagaaccacacaaacatccaaagc
atgtggttggttcaactctccaggcatactggatatactgtcttaaactt
ggttctgtatggagtagtagaaaataatggtatcattttcaataagatat
tcaaggcctgggggagttgttcttttcctcatttccttctttcctacctt
attttacagtcatttatagattggaaatggacacttttttgtgtggctgt
acctcatacacttctccatgttcatcttattcttacatatctaggaagtc
ccacatatttaaaaattccaaataattgtcattcttgatttcacccctcc
cactctcagcatcctttctcttctaaatattgtcacgagtcacaaaccca
tttaaggaatacatatctaccactcatttagcttcattttcatggtcaga
tagaatattcaggcagggattctcaaaggatcatcagcgctcactccctg
gggacatcttggaaagagaaacatttggttctgcataagctttagatcta
atgaatcaaactcagggtatgggctccacttcctggattttatgagcctc
cagatggttctgatgaacagtgaagtctgacaggggtatgaaagtggttt
tgctacgccctcccctattctgctctgaggacagcaaaggattagtatct
gattttcattcctatttttccccttttccaatttgatttcttgtccacat
gaaaggtgccgtgcttgtgt

gaattcttgtgttattaaggctagaggttttgtgtgaaaaaagagaaaaa
aataaatttgtactctgtatgtgttcagagagttctatattctgggaggg
tactttttaacagacatcaactaatgttggcatactgtatttcatactat
agttgaatgactacctcagaaaggtcctgtgcatattactgtcctctgga
cattttgtctggcttcagaaagtatacctattgacaaaataaacactgct
ttgtaaattgatgaatcatttagtttcaagataccatgccaagatgaact
ttatggtgaatggcccgagccctgaaaacctatcaaagtggaggaatgta
atcttgctctatccatgcaatttatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111206969_111208036
seq2: B6Ng01-262J10.b_43_1112 (reverse)

seq1  ACACAAGCAC-GCACCTTTCATTGTTGGAC-AGAAATCAAATTGGAAA--  46
      |||||||||| |||||||||||   ||||| |||||||||||||||||  
seq2  ACACAAGCACGGCACCTTTCAT--GTGGACAAGAAATCAAATTGGAAAAG  48

seq1  GGGGAAAATAGGAATGAAAATCAGATACTAATCTTTTGCTGTCCTCAGAG  96
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGAAAAATAGGAATGAAAATCAGATACTAATCCTTTGCTGTCCTCAGAG  98

seq1  CAGAATAGGGGAGGGCGTAGCAAAACCACTTTCATACCCCTGTCAGACTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGGGAGGGCGTAGCAAAACCACTTTCATACCCCTGTCAGACTT  148

seq1  CACTGTTCATCAGAACCATCTGGAGGCTCATAAAATCCAGGAAGTGGAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCATCAGAACCATCTGGAGGCTCATAAAATCCAGGAAGTGGAGC  198

seq1  CCATACCCTGAGTTTGATTCATTAGATCTAAAGCTTATGCAGAACCAAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCTGAGTTTGATTCATTAGATCTAAAGCTTATGCAGAACCAAAT  248

seq1  GTTTCTCTTTCCAAGATGTCCCCAGGGAGTGAGCGCTGATGATCCTTTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTTCCAAGATGTCCCCAGGGAGTGAGCGCTGATGATCCTTTGA  298

seq1  GAATCCCTGCCTGAATATTCTATCTGACCATGAAAATGAAGCTAAATGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTGCCTGAATATTCTATCTGACCATGAAAATGAAGCTAAATGAG  348

seq1  TGGTAGATATGTATTCCTTAAATGGGTTTGTGACTCGTGACAATATTTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATATGTATTCCTTAAATGGGTTTGTGACTCGTGACAATATTTAG  398

seq1  AAGAGAAAGGATGCTGAGAGTGGGAGGGGTGAAATCAAGAATGACAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGGATGCTGAGAGTGGGAGGGGTGAAATCAAGAATGACAATTA  448

seq1  TTTGGAATTTTTAAATATGTGGGACTTCCTAGATATGTAAGAATAAGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTTTAAATATGTGGGACTTCCTAGATATGTAAGAATAAGATG  498

seq1  AACATGGAGAAGTGTATGAGGTACAGCCACACAAAAAAGTGTCCATTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAGAAGTGTATGAGGTACAGCCACACAAAAAAGTGTCCATTTCC  548

seq1  AATCTATAAATGACTGTAAAATAAGGTAGGAAAGAAGGAAATGAGGAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAAATGACTGTAAAATAAGGTAGGAAAGAAGGAAATGAGGAAAA  598

seq1  GAACAACTCCCCCAGGCCTTGAATATCTTATTGAAAATGATACCATTATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTCCCCCAGGCCTTGAATATCTTATTGAAAATGATACCATTATT  648

seq1  TTCTACTACTCCATACAGAACCAAGTTTAAGACAGTATATCCAGTATGCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTACTCCATACAGAACCAAGTTTAAGACAGTATATCCAGTATGCC  698

seq1  TGGAGAGTTGAACCAACCACATGCTTTGGATGTTTGTGTGGTTCTGGGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTGAACCAACCACATGCTTTGGATGTTTGTGTGGTTCTGGGAG  748

seq1  GAGGACTGGAGATCTCTGTCCTGGCATTAAATGAGCATTTTTTATTACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGGAGATCTCTGTCCTGGCATTAAATGAGCATTTTTTATTACAC  798

seq1  TTTATGACACTAAGGGTAGCGTGTTAGAGTGAGAGGGTTGGTCACCCAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACACTAAGGGTAGCGTGTTAGAGTGAGAGGGTTGGTCACCCAAG  848

seq1  TTTCACAAGGATGTCTCAGTTTACTCTTGGGTTGCATAAGAAGTATAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGGATGTCTCAGTTTACTCTTGGGTTGCATAAGAAGTATAAGC  898

seq1  GTTGGCAACTAAGGCACATACAGGGCCATTTTGACGAGAATGACAGATGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAACTAAGGCACATACAGGGCCATTTTGACGAGAATGACAGATGG  948

seq1  TAAATTCAAATGACATGGCTATTGAGCTATGCTGTCTGGATAGAAGGCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAAATGACATGGCTATTGAGCTATGCTGTCTGGATAGAAGGCCA  998

seq1  CTGTGTGTAAACCTTTCATCATTAGTGTGAATTTAATCATTTGAAAGAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTAAACCTTTCATCATTAGTGTGAATTTAATCATTTGAAAGAGC  1048

seq1  TGATAAGAATAAATAGGAATTC  1068
      ||||||||||||||||||||||
seq2  TGATAAGAATAAATAGGAATTC  1070


seq1: chr6_111127452_111127891
seq2: B6Ng01-262J10.g_67_506

seq1  GAATTCTTGTGTTATTAAGGCTAGAGGTTTTGTGTGAAAAAAGAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGTTATTAAGGCTAGAGGTTTTGTGTGAAAAAAGAGAAAAA  50

seq1  AATAAATTTGTACTCTGTATGTGTTCAGAGAGTTCTATATTCTGGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTGTACTCTGTATGTGTTCAGAGAGTTCTATATTCTGGGAGGG  100

seq1  TACTTTTTAACAGACATCAACTAATGTTGGCATACTGTATTTCATACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTAACAGACATCAACTAATGTTGGCATACTGTATTTCATACTAT  150

seq1  AGTTGAATGACTACCTCAGAAAGGTCCTGTGCATATTACTGTCCTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATGACTACCTCAGAAAGGTCCTGTGCATATTACTGTCCTCTGGA  200

seq1  CATTTTGTCTGGCTTCAGAAAGTATACCTATTGACAAAATAAACACTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTCTGGCTTCAGAAAGTATACCTATTGACAAAATAAACACTGCT  250

seq1  TTGTAAATTGATGAATCATTTAGTTTCAAGATACCATGCCAAGATGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATTGATGAATCATTTAGTTTCAAGATACCATGCCAAGATGAACT  300

seq1  TTATGGTGAATGGCCCGAGCCCTGAAAACCTATCAAAGTGGAGGAATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTGAATGGCCCGAGCCCTGAAAACCTATCAAAGTGGAGGAATGTA  350

seq1  ATCTTGCTCTATCCATGCAATTTATATATATATATATATATATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTCTATCCATGCAATTTATATATATATATATATATATATATATA  400

seq1  TATATATATATATATATATATATATATATATATATATATA  440
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATA  440


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