BAC Information

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BAC

Clone NameB6Ng01-262P11
Chromosome6 (Build37)
Map Location 107,915,535 - 107,916,678
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262P11.bB6Ng01-262P11.g
ACCGA067250GA067251
length1,1951,126
definitionB6Ng01-262P11.b B6Ng01-262P11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaata
tccaacatccttaattatcagggaaatgcaaatcaaaacaagcctgagat
tccacctcacaccaatcataatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatttggagaaagagaaatgctcctccattgttggtg
ggattgcaagcttgtacaaccactttggaaatcagtctggcggttcctta
gaaaattggacatagtactaccggaggatacagcaatacctctcctgggc
atatatccagaagatgttccaacctctaagaaggacacatgctccactat
gttcatagcagctttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactccgctattaaaagaatgaatttgtgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacaccatcacaaaa
gaactcaaatgatatgtactcactgataagtgaatattagcccagaaact
tagcattgcgaaatataagggacaatttgcaaaacacatgaaactgaaga
agaacgaagaccaaagtgtggacacattgccccttcttagaattggaaac
aatgacccatggaaggagttacagagacaaagtttggagctgagacaaaa
tgatggaccatctagagactgccatatccagggttccatcccataatcag
cttccaaacgctgacaacattgcatacattagcaagattttgctgaaagg
acccagatatagctgtctcctgagagactatgcaggggcctagcaaacac
agaagtggatgctcacagtcagctattggatggatcacagggctcccact
agaggagctagagaaagtacccaaggagctaaagggatctgcacctatag
gtggaacacattatgaactaaccagtacccagagctctgacttctagctg
catatgtatcaaagatggctagtcagacatcactgcaagagagtcatgac
agcaactttattatactcagtcagggatcgtcatgtcaaaatgaatgtgg
ttaggaatggggagagtcctcaatgatgcatagctacgactgata
gaattccaaacaggagaatgggattaacatcaaatataattaggcccaga
gctatccacaatgtcagctcaggagagggtctccaaacaccctagtctat
ctgagcccttccaactaaattttctgacaatccctgaaactctattttta
ttggtattgccattttttaatatttgtatgtatgatcccatgcttcatct
tgctcttccatattggagttggttctacctgggcagggctttgtctaatt
tctgttgtttattccttgtgtctggagtttggtacctaaatctttcagtg
aagaagtgaatgaacagctgaggcaatacggagtgaaagtcaggactttt
gaggacatttgagctgtgttttgatgctgacttgaaaacataggtgcata
ctaacttcagttaatgaatgtccctcacctactttagaaagccatctgcc
tttgggagcgagattttggagcacagaatacagagcagccagagatgaag
aggttgcttcacccacaggactatttgtcttgtcggccagtttcccaggt
ttaatcttcttgaattactaccagagaccaaatatcacattgttcgatga
aaagcatattattacaaatatatattgtttagaatggttgcactatggta
ttcatgccctcatttgctcttcataataactctgtgatgaagttagaggt
tgtatcataaacaaatgaggtatttgtgtcatataggctatacaattcac
ctaagtcatgtcctaaacaggtagctgtgtgagacttaatttgggctttc
caactttgatttaagatttatcccaccaataataagtgtatatattattt
aggaacaaaggatccatagtaggtaaatgagagacatcagtataagttgt
atataataggttgagacagaatttgagaagtgggcattattttttttctg
cattgagaaattatattacacagtgatttagataccttccctagtactga
ctcaattcttttctctacgttgctgtgtagttctactccaatctctctct
aatataaattctctcctctaataactagttctctataactttcactgatt
tgagctgcaaagttttatgtgtactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107915535_107916678
seq2: B6Ng01-262P11.g_65_1190 (reverse)

seq1  AAGTACACATAAAACTCTGCAGCTCAAATCAGTGAAAAGTAATTAGGAGA  50
      |||||||||||||||| ||||||||||||||||| ||||| ||    |||
seq2  AAGTACACATAAAACTTTGCAGCTCAAATCAGTG-AAAGTTAT----AGA  45

seq1  -AACTAGTTTATTAGA-GAGAGAATTTAATTATTAGAAGAGAGATTTGGG  98
       |||||| |||||||| |||||||||||  |||||| |||||||||  ||
seq2  GAACTAG-TTATTAGAGGAGAGAATTTA--TATTAG-AGAGAGATT--GG  89

seq1  AGTTAAGAACTACACAGCAAACGTAGGAGAAAGAATTGGAGTCAGTAACT  148
      |||  ||||||||||||| |||||||   |||||||| |||||||| |||
seq2  AGT--AGAACTACACAGC-AACGTAGAGAAAAGAATT-GAGTCAGT-ACT  134

seq1  AGGGAAGGGTATTCTTAAATCACTGTGTAATATAATTTCTCAATGCAGAA  198
      |||||| |||||   |||||||||||||||||||||||||||||||||||
seq2  AGGGAA-GGTAT--CTAAATCACTGTGTAATATAATTTCTCAATGCAGAA  181

seq1  AAAAAATAATGCCCACCTTCTCAAATTCTGTCTCAACCTATTATATACAA  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATGCCCA-CTTCTCAAATTCTGTCTCAACCTATTATATACAA  230

seq1  CTTATACTGATGTCTCTCATTTACCTACTATGGATCCTTTGTTCCTAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTGATGTCTCTCATTTACCTACTATGGATCCTTTGTTCCTAAAT  280

seq1  AATATATACACTTATTATTGGTGGGATAAATCTTAAATCAAAGTTGGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACACTTATTATTGGTGGGATAAATCTTAAATCAAAGTTGGAAA  330

seq1  GCCCAAATTAAGTCTCACACAGCTACCTGTTTAGGACATGACTTAGGTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATTAAGTCTCACACAGCTACCTGTTTAGGACATGACTTAGGTGA  380

seq1  ATTGTATAGCCTATATGACACAAATACCTCATTTGTTTATGATACAACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAGCCTATATGACACAAATACCTCATTTGTTTATGATACAACCT  430

seq1  CTAACTTCATCACAGAGTTATTATGAAGAGCAAATGAGGGCATGAATACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCATCACAGAGTTATTATGAAGAGCAAATGAGGGCATGAATACC  480

seq1  ATAGTGCAACCATTCTAAACAATATATATTTGTAATAATATGCTTTTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAACCATTCTAAACAATATATATTTGTAATAATATGCTTTTCAT  530

seq1  CGAACAATGTGATATTTGGTCTCTGGTAGTAATTCAAGAAGATTAAACCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAATGTGATATTTGGTCTCTGGTAGTAATTCAAGAAGATTAAACCT  580

seq1  GGGAAACTGGCCGACAAGACAAATAGTCCTGTGGGTGAAGCAACCTCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTGGCCGACAAGACAAATAGTCCTGTGGGTGAAGCAACCTCTTC  630

seq1  ATCTCTGGCTGCTCTGTATTCTGTGCTCCAAAATCTCGCTCCCAAAGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCTGCTCTGTATTCTGTGCTCCAAAATCTCGCTCCCAAAGGCA  680

seq1  GATGGCTTTCTAAAGTAGGTGAGGGACATTCATTAACTGAAGTTAGTATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTCTAAAGTAGGTGAGGGACATTCATTAACTGAAGTTAGTATG  730

seq1  CACCTATGTTTTCAAGTCAGCATCAAAACACAGCTCAAATGTCCTCAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATGTTTTCAAGTCAGCATCAAAACACAGCTCAAATGTCCTCAAAA  780

seq1  GTCCTGACTTTCACTCCGTATTGCCTCAGCTGTTCATTCACTTCTTCACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACTTTCACTCCGTATTGCCTCAGCTGTTCATTCACTTCTTCACT  830

seq1  GAAAGATTTAGGTACCAAACTCCAGACACAAGGAATAAACAACAGAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTAGGTACCAAACTCCAGACACAAGGAATAAACAACAGAAATT  880

seq1  AGACAAAGCCCTGCCCAGGTAGAACCAACTCCAATATGGAAGAGCAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGCCCTGCCCAGGTAGAACCAACTCCAATATGGAAGAGCAAGAT  930

seq1  GAAGCATGGGATCATACATACAAATATTAAAAAATGGCAATACCAATAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGGGATCATACATACAAATATTAAAAAATGGCAATACCAATAAA  980

seq1  AATAGAGTTTCAGGGATTGTCAGAAAATTTAGTTGGAAGGGCTCAGATAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTTTCAGGGATTGTCAGAAAATTTAGTTGGAAGGGCTCAGATAG  1030

seq1  ACTAGGGTGTTTGGAGACCCTCTCCTGAGCTGACATTGTGGATAGCTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTGTTTGGAGACCCTCTCCTGAGCTGACATTGTGGATAGCTCTG  1080

seq1  GGCCTAATTATATTTGATGTTAATCCCATTCTCCTGTTTGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAATTATATTTGATGTTAATCCCATTCTCCTGTTTGGAATTC  1126