BAC Information

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BAC

Clone NameB6Ng01-263G12
Chromosome6 (Build37)
Map Location 98,483,816 - 98,646,727
singlet/doubletdoublet
Overlap geneLOC665963
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665979, Foxp1, Eif4e3, Gpr27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263G12.bB6Ng01-263G12.g
ACCGA067584GA067585
length571821
definitionB6Ng01-263G12.b B6Ng01-263G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,483,816 - 98,484,394)(98,645,913 - 98,646,727)
sequence
aaaatcccttgaattgatgtgtagaaacccacttttcatccagtgtcagg
agcaaccagaattttgactccctgcgtatattactaaaggtacattgcac
cttgggctatgggatactgagtcaccaagcatttttctagactatgtaaa
gacaggacttaatacccagagttgaaggtgatggtgctgatgataataat
gtaaacactgatacatttttgccttgaaaatttattttgtgggtttgtgt
cacacatcaacattctctacccatctatggatacctatattttcacagta
gcttcataatcttctaattaacattttacaacatttgcaaatttcattac
cttatattctgcattaagaaagaagaatgcatcataattatgtgcttcta
agactctccattgtacttttaatcaatatattttgagtttaagcaagggg
agtgaacctataagaagtgttggaggtagctcatctttcacaccctaaag
gaatctccaggtaacaactgtgtgtgtgtgtgtgtgtgtgagagagagag
agagagagagagagagagaga

gaattctgtagtcgctgaagagagagttaggatcagacgtgcaccctact
taggggtgaatgcatttttttcctctcgctgaactgtcatggaaagaagt
tttgaaaatcaagacttcaaaataggaagtttccaaagataagagactct
gggtgtccactttatcatgccagcaatgacagtggagagacagggcggct
gtgctgtaaacacctccggcatcatgccagcaatgacagtggagagaaag
ggcggctgtgctgtaaacacctccggcacctttgatgattaagagtaaat
acaggggatctccctctgccattaattcctattcaaaacatctgactcaa
aggcctaaattgctgcttgtttagtttttgaagcagggtttcactgtgca
gccttggctggcctggagctctatatgtagatggggctggccttgaattc
atagactttcaggtgcctctgccttctgcatgctaggattaagggcaagc
atcagtgctcctggcaaggccctccctttcctgggccagtgagatgcctt
agcaggtaaattgccacaaggcctgactacactacctaggtttactatct
aaatgggaggagtagaagagaatcagtgtctgcaatctgttctccgacct
ccgctctgtgctgtggtatatatgcatgtggcatgcttgactatgtgagt
gcttttggtatcaaccaagcaaaacagatatcatagttgtcaggtgattc
ccttccaccctccctctttctccttatcctcccctccctctcatcctttc
tccctccccttccctcccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98483816_98484394
seq2: B6Ng01-263G12.b_45_621

seq1  GAATTCAAAATCCCTTGAATTGATGTGTAGAAACCCACTTTTCATCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCCCTTGAATTGATGTGTAGAAACCCACTTTTCATCCAGT  50

seq1  GTCAGGAGCAACCAGAATTTTGACTCCCTGCGTATATTACTAAAGGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGCAACCAGAATTTTGACTCCCTGCGTATATTACTAAAGGTACA  100

seq1  TTGCACCTTGGGCTATGGGATACTGAGTCACCAAGCATTTTTCTAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTTGGGCTATGGGATACTGAGTCACCAAGCATTTTTCTAGACTA  150

seq1  TGTAAAGACAGGACTTAATACCCAGAGTTGAAGGTGATGGTGCTGATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGACAGGACTTAATACCCAGAGTTGAAGGTGATGGTGCTGATGAT  200

seq1  AATAATGTAAACACTGATACATTTTTGCCTTGAAAATTTATTTTGTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTAAACACTGATACATTTTTGCCTTGAAAATTTATTTTGTGGGT  250

seq1  TTGTGTCACACATCAACATTCTCTACCCATCTATGGATACCTATATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCACACATCAACATTCTCTACCCATCTATGGATACCTATATTTTC  300

seq1  ACAGTAGCTTCATAATCTTCTAATTAACATTTTACAACATTTGCAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCTTCATAATCTTCTAATTAACATTTTACAACATTTGCAAATTT  350

seq1  CATTACCTTATATTCTGCATTAAGAAAGAAGAATGCATCATAATTATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTTATATTCTGCATTAAGAAAGAAGAATGCATCATAATTATGTG  400

seq1  CTTCTAAGACTCTCCATTGTACTTTTAATCAATATATTTTGAGTTTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGACTCTCCATTGTACTTTTAATCAATATATTTTGAGTTTAAGC  450

seq1  AAGGGGAGTGAACCTATAAGAAGTGTTGGAGGTAGCTCATCTTTCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGTGAACCTATAAGAAGTGTTGGAGGTAGCTCATCTTTCACACC  500

seq1  CTAAAGGAATCTCCAGGTAACAACTGTGTGTGTGTGTGTGTGTGTGTGAG  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAAAGGAATCTCCAGGTAACAACTGTGTGTGTGTGTGTGTGTGTGAGAG  550

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGA  579
      |||||||||||||||||||||||||||  
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGA--  577


seq1: chr6_98645913_98646727
seq2: B6Ng01-263G12.g_68_888 (reverse)

seq1  AAG----GGGAAGGGAAG---AAAAGGA-GAGAGGGAGGGGAGGATAA-G  41
      |||    |||||||| ||    |||||| ||||||||||||||||||| |
seq2  AAGGGGAGGGAAGGGGAGGGAGAAAGGATGAGAGGGAGGGGAGGATAAGG  50

seq1  AGAAAGAGGGAGGGTGGAAGGGAATCACCTGGAACAACTAATGATATCTG  91
      |||||||||||||||||||||||||||||||  |||||| ||||||||||
seq2  AGAAAGAGGGAGGGTGGAAGGGAATCACCTG--ACAACT-ATGATATCTG  97

seq1  TTTTGCTTGGTTGATACCAAAAGCACTCACATAGTCAAGCATGCCACATG  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGGTTGATACCAAAAGCACTCACATAGTCAAGCATGCCACATG  147

seq1  CATATATACCACAGCACAGAGCGGAGGTCGGAGAACAGATTGCAGACACT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACCACAGCACAGAGCGGAGGTCGGAGAACAGATTGCAGACACT  197

seq1  GATTCTCTTCTACTCCTCCCATTTAGATAGTAAACCTAGGTAGTGTAGTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTTCTACTCCTCCCATTTAGATAGTAAACCTAGGTAGTGTAGTC  247

seq1  AGGCCTTGTGGCAATTTACCTGCTAAGGCATCTCACTGGCCCAGGAAAGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGTGGCAATTTACCTGCTAAGGCATCTCACTGGCCCAGGAAAGG  297

seq1  GAGGGCCTTGCCAGGAGCACTGATGCTTGCCCTTAATCCTAGCATGCAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTTGCCAGGAGCACTGATGCTTGCCCTTAATCCTAGCATGCAGA  347

seq1  AGGCAGAGGCACCTGAAAGTCTATGAATTCAAGGCCAGCCCCATCTACAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCACCTGAAAGTCTATGAATTCAAGGCCAGCCCCATCTACAT  397

seq1  ATAGAGCTCCAGGCCAGCCAAGGCTGCACAGTGAAACCCTGCTTCAAAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTCCAGGCCAGCCAAGGCTGCACAGTGAAACCCTGCTTCAAAAA  447

seq1  CTAAACAAGCAGCAATTTAGGCCTTTGAGTCAGATGTTTTGAATAGGAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAGCAGCAATTTAGGCCTTTGAGTCAGATGTTTTGAATAGGAAT  497

seq1  TAATGGCAGAGGGAGATCCCCTGTATTTACTCTTAATCATCAAAGGTGCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCAGAGGGAGATCCCCTGTATTTACTCTTAATCATCAAAGGTGCC  547

seq1  GGAGGTGTTTACAGCACAGCCGCCCTTTCTCTCCACTGTCATTGCTGGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTTTACAGCACAGCCGCCCTTTCTCTCCACTGTCATTGCTGGCA  597

seq1  TGATGCCGGAGGTGTTTACAGCACAGCCGCCCTGTCTCTCCACTGTCATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCGGAGGTGTTTACAGCACAGCCGCCCTGTCTCTCCACTGTCATT  647

seq1  GCTGGCATGATAAAGTGGACACCCAGAGTCTCTTATCTTTGGAAACTTCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATGATAAAGTGGACACCCAGAGTCTCTTATCTTTGGAAACTTCC  697

seq1  TATTTTGAAGTCTTGATTTTCAAAACTTCTTTCCATGACAGTTCAGCGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAGTCTTGATTTTCAAAACTTCTTTCCATGACAGTTCAGCGAG  747

seq1  AGGAAAAAAATGCATTCACCCCTAAGTAGGGTGCACGTCTGATCCTAACT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAATGCATTCACCCCTAAGTAGGGTGCACGTCTGATCCTAACT  797

seq1  CTCTCTTCAGCGACTACAGAATTC  815
      ||||||||||||||||||||||||
seq2  CTCTCTTCAGCGACTACAGAATTC  821


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