BAC Information

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BAC

Clone NameB6Ng01-263M16
Chromosome6 (Build37)
Map Location 96,190,978 - 96,356,515
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneLOC435912, Suclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263M16.bB6Ng01-263M16.g
ACCGA067868GA067869
length7201,096
definitionB6Ng01-263M16.b B6Ng01-263M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,355,797 - 96,356,515)(96,190,978 - 96,192,081)
sequence
gaattcagaagaaatcagtaagaaatagtcaatgaactgcttcttcagct
aacctgcaaacgagagtagggaagttcctaggggtttttcttcttccagc
agcccacagaagatcaagaagagagctgaaagattaagaaaacatttaca
tgaacttaattcctgtgtacatcagaatcccaagagctctgaaccggttt
agagatgtgcattgacaagcaaaaggtcagggtgagaaaccatggagaga
tgacagagaaatgagggtacacacttttttaaagctccaggtaaattaag
gctgaatatgcagacttctatgtgcacagatgagctaatgtggtacaaac
acactcggtcgggtattttcagtctgcaacatttgatgtaacatatttag
aagaaaagaaaattaatgcatttgggttaggagaaaagataatgagtgat
gagaaatgaatgaaaaaataaatataccttttttccaggaacatgggttg
ctgggtatatgactgtgaatgttttgctaaaatagatcagagtcctatta
ttactgctggcctattgtcaacttgacagcagcttagaagagggaacctg
attgagaaaaggtcccaatatgattgcttggtaagcaaatctgatttgca
aactttatatgccccagtacaggggaacgccagggccaaaaagtgggagt
gggtgagttaggggagtggg

gaattcagtgggaaacaagttacattatgaggaaatattgattcactgtg
ggcacagtgagtcctgttatgataaagacagtctgtggccatttgttgtc
ttttttattttttcatttccttcttgaaagaaaaaaaaaaaaactaaata
tatgccttgcttactgtaaccaagacatttagattgcatccttttataga
ataaaaagatttattgggcttcaactttttcccccatggcttggataccc
tgaggtcatgaaaaagttgagctcattccattatacaagctctgggtttt
atacttatattaagtctggagcctagtatacgaatctatcccagtccata
gaaagtcttctcaggcttatctagacccctgcaatgctgtatctcaaacc
agggcaacatggcaaatagagaatatcacactgaataacacagctcttta
ttgggactagctccacggctcactgccagtataatacaatactgggtcaa
gtttctccatggcactctgtgagataatagttgagataatagttcttcac
tggtggaggagttgccagggttacctgaaatgttgcatgtagatttttaa
atatgtactgcatcaatgctaggtcccatccaagttgatgtacctgtgat
tgctgtggcctgggtccagtcttgcatgtcaaactacagcgagtaaaacc
tagtaaaaaggacttaaaaagtggcctcatgagagcctgtcctagcagcc
atccacactcagattaggtggaaggaaatctggtgatggtagcccttggc
attgagtactaacattgatttgccactgtgcttgcttgtagatgagtgcc
ttttcttaatccctgtgcagagttgtggcctgcttcaccttcagaaggaa
gagatcaagtcttagcagagtggtcctgaacagcacttcccctttcagaa
gccctttccagattatattactgcatttttctagccaagtgatgttcttt
tctcatttaggcatcatgatttgagatgatctttatgatttgggcatgtt
gagatggctcagctggtgagccatttggctgccataacctggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96355797_96356515
seq2: B6Ng01-263M16.b_51_770 (reverse)

seq1  CCCACTCCCCT-ACTCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCT  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCCTAACTCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCT  50

seq1  GTACTGGGGCATATAAAGTTTGCAAATCAGATTTGCTTACCAAGCAATCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGGCATATAAAGTTTGCAAATCAGATTTGCTTACCAAGCAATCA  100

seq1  TATTGGGACCTTTTCTCAATCAGGTTCCCTCTTCTAAGCTGCTGTCAAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGACCTTTTCTCAATCAGGTTCCCTCTTCTAAGCTGCTGTCAAGT  150

seq1  TGACAATAGGCCAGCAGTAATAATAGGACTCTGATCTATTTTAGCAAAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAGGCCAGCAGTAATAATAGGACTCTGATCTATTTTAGCAAAAC  200

seq1  ATTCACAGTCATATACCCAGCAACCCATGTTCCTGGAAAAAAGGTATATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTCATATACCCAGCAACCCATGTTCCTGGAAAAAAGGTATATT  250

seq1  TATTTTTTCATTCATTTCTCATCACTCATTATCTTTTCTCCTAACCCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCATTCATTTCTCATCACTCATTATCTTTTCTCCTAACCCAAA  300

seq1  TGCATTAATTTTCTTTTCTTCTAAATATGTTACATCAAATGTTGCAGACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATTTTCTTTTCTTCTAAATATGTTACATCAAATGTTGCAGACT  350

seq1  GAAAATACCCGACCGAGTGTGTTTGTACCACATTAGCTCATCTGTGCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACCCGACCGAGTGTGTTTGTACCACATTAGCTCATCTGTGCACA  400

seq1  TAGAAGTCTGCATATTCAGCCTTAATTTACCTGGAGCTTTAAAAAAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCTGCATATTCAGCCTTAATTTACCTGGAGCTTTAAAAAAGTGT  450

seq1  GTACCCTCATTTCTCTGTCATCTCTCCATGGTTTCTCACCCTGACCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTCATTTCTCTGTCATCTCTCCATGGTTTCTCACCCTGACCTTTT  500

seq1  GCTTGTCAATGCACATCTCTAAACCGGTTCAGAGCTCTTGGGATTCTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAATGCACATCTCTAAACCGGTTCAGAGCTCTTGGGATTCTGAT  550

seq1  GTACACAGGAATTAAGTTCATGTAAATGTTTTCTTAATCTTTCAGCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGGAATTAAGTTCATGTAAATGTTTTCTTAATCTTTCAGCTCTC  600

seq1  TTCTTGATCTTCTGTGGGCTGCTGGAAGAAGAAAAACCCCTAGGAACTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCTTCTGTGGGCTGCTGGAAGAAGAAAAACCCCTAGGAACTTC  650

seq1  CCTACTCTCGTTTGCAGGTTAGCTGAAGAAGCAGTTCATTGACTATTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTCGTTTGCAGGTTAGCTGAAGAAGCAGTTCATTGACTATTTCT  700

seq1  TACTGATTTCTTCTGAATTC  719
      ||||||||||||||||||||
seq2  TACTGATTTCTTCTGAATTC  720


seq1: chr6_96190978_96192081
seq2: B6Ng01-263M16.g_66_1161

seq1  GAATTCAGTGGGAAACAAGTTACATTATGAGGAAATATTGATTCACTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGAAACAAGTTACATTATGAGGAAATATTGATTCACTGTG  50

seq1  GGCACAGTGAGTCCTGTTATGATAAAGACAGTCTGTGGCCATTTGTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTGAGTCCTGTTATGATAAAGACAGTCTGTGGCCATTTGTTGTC  100

seq1  TTTTTTATTTTTTCATTTCCTTCTTGAAAGAAAAAAAAAAAAACTAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTCATTTCCTTCTTGAAAGAAAAAAAAAAAAACTAAATA  150

seq1  TATGCCTTGCTTACTGTAACCAAGACATTTAGATTGCATCCTTTTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTGCTTACTGTAACCAAGACATTTAGATTGCATCCTTTTATAGA  200

seq1  ATAAAAAGATTTATTGGGCTTCAACTTTTTCCCCCATGGCTTGGATACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGATTTATTGGGCTTCAACTTTTTCCCCCATGGCTTGGATACCC  250

seq1  TGAGGTCATGAAAAAGTTGAGCTCATTCCATTATACAAGCTCTGGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCATGAAAAAGTTGAGCTCATTCCATTATACAAGCTCTGGGTTTT  300

seq1  ATACTTATATTAAGTCTGGAGCCTAGTATACGAATCTATCCCAGTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATATTAAGTCTGGAGCCTAGTATACGAATCTATCCCAGTCCATA  350

seq1  GAAAGTCTTCTCAGGCTTATCTAGACCCCTGCAATGCTGTATCTCAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTCTCAGGCTTATCTAGACCCCTGCAATGCTGTATCTCAAACC  400

seq1  AGGGCAACATGGCAAATAGAGAATATCACACTGAATAACACAGCTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACATGGCAAATAGAGAATATCACACTGAATAACACAGCTCTTTA  450

seq1  TTGGGACTAGCTCCACGGCTCACTGCCAGTATAATACAATACTGGGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTAGCTCCACGGCTCACTGCCAGTATAATACAATACTGGGTCAA  500

seq1  GTTTCTCCATGGCACTCTGTGAGATAATAGTTGAGATAATAGTTCTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCATGGCACTCTGTGAGATAATAGTTGAGATAATAGTTCTTCAC  550

seq1  TGGTGGAGGAGTTGCCAGGGTTACCTGAAATGTTGCATGTAGATTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGGAGTTGCCAGGGTTACCTGAAATGTTGCATGTAGATTTTTAA  600

seq1  ATATGTACTGCATCAATGCTAGGTCCCATCCAAGTTGATGTACCTGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTGCATCAATGCTAGGTCCCATCCAAGTTGATGTACCTGTGAT  650

seq1  TGCTGTGGCCTGGGTCCAGTCTTGCATGTCAAACTACAGCGAGTAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGCCTGGGTCCAGTCTTGCATGTCAAACTACAGCGAGTAAAACC  700

seq1  TAGTAAAAAGGACTTAAAAAGTGGCCTCATGAGAGCCTGTCCTAGCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAAGGACTTAAAAAGTGGCCTCATGAGAGCCTGTCCTAGCAGCC  750

seq1  ATCCACACTCAGATTAGGTGGAAGGAAATCTGGTGATGGTAGCCCTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTCAGATTAGGTGGAAGGAAATCTGGTGATGGTAGCCCTTGGC  800

seq1  ATTGAGTACTAACATTGATTTGCCACTGTGCTTGCTTGTAGATGAGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTACTAACATTGATTTGCCACTGTGCTTGCTTGTAGATGAGTGCC  850

seq1  TTTTCTTAATCCCTGTGCAGAGTTGTGGCCTGCTTCACCTTCAGAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATCCCTGTGCAGAGTTGTGGCCTGCTTCACCTTCAGAAGGAA  900

seq1  GAGATCAAGTCTTAGCAGAGGTGGTCCTGAACAGCACTTCCCCTTTCAGA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGATCAAGTCTTAGCAGA-GTGGTCCTGAACAGCACTTCCCCTTTCAGA  949

seq1  AAGCCCTTCCAGATTATATTACTGCATTTTTCTAGCCAAGTGATGTTC-T  999
      |  || |||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCCCTTTCCAGATTATATTACTGCATTTTTCTAGCCAAGTGATGTTCTT  999

seq1  TTCTCATTTTAAGGGCATTCAATGATTTGAGATGATCTTTATGGAATTTG  1049
      |||||||||    |||||   ||||||||||||||||||||||  |||||
seq2  TTCTCATTT---AGGCAT--CATGATTTGAGATGATCTTTATG--ATTTG  1042

seq1  GGCATTGGTGAGATGGCTCAGCTGGTGAAGGCATTT-GCTGCCCATAA-C  1097
      |||| || ||||||||||||||||||| || ||||| |||| |||||| |
seq2  GGCA-TGTTGAGATGGCTCAGCTGGTG-AGCCATTTGGCTG-CCATAACC  1089

seq1  TGGAGAC  1104
      |||||||
seq2  TGGAGAC  1096


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