BAC Information

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BAC

Clone NameB6Ng01-264D11
Chromosome6 (Build37)
Map Location 29,303,465 - 29,488,797
singlet/doubletdoublet
Overlap geneCalu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5
Upstream geneLOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651
Downstream geneTnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264D11.bB6Ng01-264D11.g
ACCGA068176GA068177
length8411,167
definitionB6Ng01-264D11.b B6Ng01-264D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,487,966 - 29,488,797)(29,303,465 - 29,304,646)
sequence
gaattcccttgctctgcttcctaatgacaacatataccttagtgcccgac
ctttctttcttttctctcttttccttccttcttccttccttccttccttc
cttccttccttccttcctttcattttatttatttatttttgtaacgtggg
ctaggaatccaaagttggatcttggaagcacattattcatctctaagagc
ctcataaagtggatacttgataagacagtttttttctttagtagctgggg
attttagctcagtggtagatcacaacctttgagcatcccccagggcaggg
gagtggggagtggttttaggagaatatacatgaaatgctatttctagtat
ttacttcaaaataatcaccgttgggagcctggacaggagctgcaatgaga
aagatagcattcagatgatgatctttaaaacggggacagaggctttcata
ccattatttttcctttctcacaaatgtgtaaagtcttccatcataaaaag
ataaatgtcccaggcatgttgccacacatctttaaccccatcacaggaag
cagtggcagatatatctcctgagttcaaaaccagcctggtctacagggca
agctgcaggacagccagggctgcatagcagaccttgccaccgccaccacc
acctcctttccccatactccccccccacccaaaaaaaccccaaaaagata
aaacaattatttgggactagaatattgctcctgagccagtttccagtgat
gagcccaccggatttgcatgtaatggcctaaatattagtagcacatttca
atacgacaagatcttgtttttttaaccatgttccagctcct
gaattcactatatagaccatgctagcctcaaactctcagagatcctcttc
tctctgcctccccagtgctaggatttaaagcatgtgcatcaggcctggcc
acttcttttatttttaaggacttttatataagcacggtcaccattggctg
tgctaaacatcttcttagtttttgtaatccagggggggctctataaagcc
aaattaatggtttaaattcattaagctactatttgaggatgggggaaatg
gacatattgaggcttataatacactgacatttagtttccacatccctaac
acagttctcttcctttgttctacttcccaaaactttgaagcagatccaga
gagaggtgttttgggggtgcaatttgattaacagcttctcaattagatgc
tttgctgagagaattttctgattggataagtatttgcatatacatgtgag
tgcttagactagttagtttcgatagtgatgtccctaggaaaggaaaacca
tttgttgctgaggtttaatctttagatttgggcagagtgggctggagaga
tggctccgcggttaagagcactgactgctcttccagaggtcctgagttca
attcccagcaactacttggtggctcacaactatctgtagtgagatctgat
gccgtcttctgatgtgtttgaagacagctacagtgtatttatatataata
aataaataaaccttaaaaaaaaagattagggcagagccatagatttagcc
ttcagaagatgtagtgtccctgactattcacttcttgcagatgtagtaac
aaattgcaacaaaccaagtggtaatttggttttgttttaattactacttg
tgtgagtaatatgggtatgtacttatgcaggtcagaggacagctttgtgt
ggggtcagttcttttctctcaccttaatgtgggttctggggatcagattc
caggctttaaacaagaggcactttacccaagatggctcaggctgtgttat
gagcactgactgctcttcgagtccttaagttcaaatccccagcaccacat
ggtggctcacaccacccatatgagatctacgcttcttctgtgcaatctga
agagagctatgcgtaactgttttataaaatatgatctttaagtatataat
gaggccactttaccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29487966_29488797
seq2: B6Ng01-264D11.b_47_887 (reverse)

seq1  AAGAGCT-GAACAT-GTTTAAAAAACAAG-TCTTGTCTTCTTG-AATGTG  46
      | ||||| |||||| ||| |||||||||| ||||||| | ||| ||||||
seq2  AGGAGCTGGAACATGGTTAAAAAAACAAGATCTTGTCGTATTGAAATGTG  50

seq1  CTACTAATA-TTAGGCCATTACATGCAAAT-CGGT-GGCTCATCACTGGA  93
      ||||||||| |||||||||||||||||||| |||| ||||||||||||||
seq2  CTACTAATATTTAGGCCATTACATGCAAATCCGGTGGGCTCATCACTGGA  100

seq1  AACTGGCTCAGGAGCAATATTCTAGT-CCAAATAATTGTTTTATCTTTTT  142
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTGGCTCAGGAGCAATATTCTAGTCCCAAATAATTGTTTTATCTTTTT  150

seq1  GGGGTTTTTTTGGGTGGGGGGGGAGTATGGGG-AAGGAGGTGGTGGTGGC  191
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGGTTTTTTTGGGTGGGGGGGGAGTATGGGGAAAGGAGGTGGTGGTGGC  200

seq1  GGTGGCAAGGTCTGCTATGCAGCCCTGGCTGTCCTGCAGCTTGCCCTGTA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAGGTCTGCTATGCAGCCCTGGCTGTCCTGCAGCTTGCCCTGTA  250

seq1  GACCAGGCTGGTTTTGAACTCAGGAGATATATCTGCCACTGCTTCCTGTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGTTTTGAACTCAGGAGATATATCTGCCACTGCTTCCTGTG  300

seq1  ATGGGGTTAAAGATGTGTGGCAACATGCCTGGGACATTTATCTTTTTATG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTAAAGATGTGTGGCAACATGCCTGGGACATTTATCTTTTTATG  350

seq1  ATGGAAGACTTTACACATTTGTGAGAAAGGAAAAATAATGGTATGAAAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACTTTACACATTTGTGAGAAAGGAAAAATAATGGTATGAAAGC  400

seq1  CTCTGTCCCCGTTTTAAAGATCATCATCTGAATGCTATCTTTCTCATTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCCGTTTTAAAGATCATCATCTGAATGCTATCTTTCTCATTGC  450

seq1  AGCTCCTGTCCAGGCTCCCAACGGTGATTATTTTGAAGTAAATACTAGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGTCCAGGCTCCCAACGGTGATTATTTTGAAGTAAATACTAGAA  500

seq1  ATAGCATTTCATGTATATTCTCCTAAAACCACTCCCCACTCCCCTGCCCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTTCATGTATATTCTCCTAAAACCACTCCCCACTCCCCTGCCCT  550

seq1  GGGGGATGCTCAAAGGTTGTGATCTACCACTGAGCTAAAATCCCCAGCTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATGCTCAAAGGTTGTGATCTACCACTGAGCTAAAATCCCCAGCTA  600

seq1  CTAAAGAAAAAAACTGTCTTATCAAGTATCCACTTTATGAGGCTCTTAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAAAAAACTGTCTTATCAAGTATCCACTTTATGAGGCTCTTAGA  650

seq1  GATGAATAATGTGCTTCCAAGATCCAACTTTGGATTCCTAGCCCACGTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAATGTGCTTCCAAGATCCAACTTTGGATTCCTAGCCCACGTTA  700

seq1  CAAAAATAAATAAATAAAATGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAATAAATAAAATGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG  750

seq1  AAGGAAGGAAGAAGGAAGGAAAAGAGAGAAAAGAAAGAAAGGTCGGGCAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGAAGGAAGGAAAAGAGAGAAAAGAAAGAAAGGTCGGGCAC  800

seq1  TAAGGTATATGTTGTCATTAGGAAGCAGAGCAAGGGAATTC  832
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATATGTTGTCATTAGGAAGCAGAGCAAGGGAATTC  841

seq1: chr6_29303465_29304646
seq2: B6Ng01-264D11.g_66_1232

seq1  GAATTCACTATATAGACCATGCTAGCCTCAAACTCTCAGAGATCCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATAGACCATGCTAGCCTCAAACTCTCAGAGATCCTCTTC  50

seq1  TCTCTGCCTCCCCAGTGCTAGGATTTAAAGCATGTGCATCAGGCCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCCCCAGTGCTAGGATTTAAAGCATGTGCATCAGGCCTGGCC  100

seq1  ACTTCTTTTATTTTTAAGGACTTTTATATAAGCACGGTCACCATTGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTATTTTTAAGGACTTTTATATAAGCACGGTCACCATTGGCTG  150

seq1  TGCTAAACATCTTCTTAGTTTTTGTAATCCAGGGGGGGCTCTATAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACATCTTCTTAGTTTTTGTAATCCAGGGGGGGCTCTATAAAGCC  200

seq1  AAATTAATGGTTTAAATTCATTAAGCTACTATTTGAGGATGGGGGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGGTTTAAATTCATTAAGCTACTATTTGAGGATGGGGGAAATG  250

seq1  GACATATTGAGGCTTATAATACACTGACATTTAGTTTCCACATCCCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTGAGGCTTATAATACACTGACATTTAGTTTCCACATCCCTAAC  300

seq1  ACAGTTCTCTTCCTTTGTTCTACTTCCCAAAACTTTGAAGCAGATCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTCTTCCTTTGTTCTACTTCCCAAAACTTTGAAGCAGATCCAGA  350

seq1  GAGAGGTGTTTTGGGGGTGCAATTTGATTAACAGCTTCTCAATTAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGTTTTGGGGGTGCAATTTGATTAACAGCTTCTCAATTAGATGC  400

seq1  TTTGCTGAGAGAATTTTCTGATTGGATAAGTATTTGCATATACATGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAGAGAATTTTCTGATTGGATAAGTATTTGCATATACATGTGAG  450

seq1  TGCTTAGACTAGTTAGTTTCGATAGTGATGTCCCTAGGAAAGGAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGACTAGTTAGTTTCGATAGTGATGTCCCTAGGAAAGGAAAACCA  500

seq1  TTTGTTGCTGAGGTTTAATCTTTAGATTTGGGCAGAGTGGGCTGGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTGAGGTTTAATCTTTAGATTTGGGCAGAGTGGGCTGGAGAGA  550

seq1  TGGCTCCGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCA  600

seq1  ATTCCCAGCAACTACTTGGTGGCTCACAACTATCTGTAGTGAGATCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCAACTACTTGGTGGCTCACAACTATCTGTAGTGAGATCTGAT  650

seq1  GCCGTCTTCTGATGTGTTTGAAGACAGCTACAGTGTATTTATATATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTTCTGATGTGTTTGAAGACAGCTACAGTGTATTTATATATAATA  700

seq1  AATAAATAAACCTTAAAAAAAAAGATTAGGGCAGAGCCATAGATTTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAACCTTAAAAAAAAAGATTAGGGCAGAGCCATAGATTTAGCC  750

seq1  TTCAGAAGATGTAGTGTCCCTGACTATTCACTTCTTGCAGATGTAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGATGTAGTGTCCCTGACTATTCACTTCTTGCAGATGTAGTAAC  800

seq1  AAATTGCAACAAACCAAGTGGTAATTTGGTTTTGTTTTAATTACTACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCAACAAACCAAGTGGTAATTTGGTTTTGTTTTAATTACTACTTG  850

seq1  TGTGAGTAATATGGGTATGTACTTATGCAGGTCAGAGGACAGCTTTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAATATGGGTATGTACTTATGCAGGTCAGAGGACAGCTTTGTGT  900

seq1  GGGGTCAGTTCTTTCTCT-TCACCTTAATGTGGGTTCTGGGGATCAGATT  949
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  GGGGTCAGTTCTTT-TCTCTCACCTTAATGTGGGTTCTGGGGATCAGATT  949

seq1  CCAGGCTTTAAACAAGAGGCACTTTACCCAAGATGGCTCAG---CGGGTA  996
      |||||||||||||||||||||||||||||||||||||||||     | ||
seq2  CCAGGCTTTAAACAAGAGGCACTTTACCCAAGATGGCTCAGGCTGTGTTA  999

seq1  AGAGCACTGACTGCTCTTCCGAAGGTCC-TAAGTTCAAAT-CCCAGCAAC  1044
       ||||||||||||||||| |||  |||| ||||||||||| |||||| ||
seq2  TGAGCACTGACTGCTCTT-CGA--GTCCTTAAGTTCAAATCCCCAGC-AC  1045

seq1  CACATGGTGGCTCACAACCACCCATAATGAGATCTAACGCCTTCTTCTGG  1094
      ||||||||||||||| ||||||||| ||||||||| ||| |||||||| |
seq2  CACATGGTGGCTCAC-ACCACCCAT-ATGAGATCT-ACG-CTTCTTCT-G  1090

seq1  TGC-ATCTGAAGAGAGCTATGGTGTACCTGTTTATAATAATAAATGAATC  1143
      ||| |||||||||||||||| | ||| |||||  | |||| | ||| |||
seq2  TGCAATCTGAAGAGAGCTAT-GCGTAACTGTT--TTATAAAATATG-ATC  1136

seq1  TTTAAAAAAGAAAGAAAAAAAAAGAGG-CACTTTACCCTT  1182
      |||||           | | || |||| ||||||||||||
seq2  TTTAA---------GTATATAATGAGGCCACTTTACCCTT  1167