BAC Information

Click to search

BAC

Clone NameB6Ng01-264I20
Chromosome6 (Build37)
Map Location 66,325,079 - 66,467,550
singlet/doubletdoublet
Overlap geneTpm3-rs3
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneLOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264I20.bB6Ng01-264I20.g
ACCGA068428GA068429
length1,151585
definitionB6Ng01-264I20.b B6Ng01-264I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,466,406 - 66,467,550)(66,325,079 - 66,325,663)
sequence
gaattctcccagccaatgggttggccaagttacccaaccaaacccccccc
ccccaacaaaatttcaaaataatataaaaatttaaaagttcttttttttc
ataagttattcaagatttctccagcattaactgatacaaagtacaatgaa
atatactttagagactgcagcttcaggaaagggcgttgagatgactttca
tgtgactaaatcagtggcaaacatcattttccttctctgtctcccttggg
ggcacatgaacactaagaggtcaccacaacactaaggggtggcatgatcc
atttttgagcagttgggatagggatagaactatgacaagtttgggctcag
ggttggggctgaacggtagcacacttgcctaaaaggcatgaggccctgga
aggtggggtcttatttggtcacatctgatggaaaaagtaaaaaataaata
agtgtaaagttgttcaaagataccaaagctgaaaaccttcacagcccgga
acagtttttggttttggctaacttcctaaaatccccctgttgtttggata
aaacttggtgcagaccactgagatctcccacagtggagcctgcctggact
ctgctggctctcagaagtcaggcccattccatgtttctcttccatggcga
gacagaatccattaggctaaaatgtgctgctccaagttgcaggagtgctt
gggatgttaaaaatgattactaagacaagaagtaatcacaatgtgcgtat
cacaactgcattgaagacacttggcattgtgctcgcattcccttaaatat
tgttcccaaagttgttcagcgcctccacctggaactctgggaagaggctg
acacagttttgtgaaaaaagtcaagggtagagggggtggcaggagggaaa
acagcctttcagttagaaagatcagccctttagtttcaaggtcagcttcc
gggagactggtcctcagggttccaagagagggagcggtcctcaggtcaag
aaggggaggtcagacctcaacagtctggtccagcatccttttgtgtacag
gagatgcctccctctttgttgcgcgttcagcttacccttccagtcatcaa
tggtctctccagtctgtaactgaatctttcacactcagcaatgggttctc
t
gaattcttagtaggcaactcagtaggaaacttctactggccctgcgatct
taagagctagattttgtaagggcaaagaatgcccctccccctttttggcc
tgtttggtcaaatccaagatttgaggagtactcaagatgggtggatttgg
ctcctgtttttgcctttgtccttcatctcttccaaaacttttgtagaatt
gaaactggttactgtcttccacctttcaatgcaaatttgacctcaaaata
catggcacaaatggccgctgctggcccaaatgtggaacttttccttttta
acttctagactgatttaagtaactccataagacagaatggcagcatggtc
tgaagcctcccagctcacttggatccttcacaaggctctggctcacaatc
gtgctcagaactagaactcctttgctttatacttttgttctacctgtgct
tctgcctctacaagcatgaaaaacactgcttgtatctttaccattccaaa
agtacgcgttatctcacagctgaagtgtggtttaaaacggctgcctcaga
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66466406_66467550
seq2: B6Ng01-264I20.b_44_1194 (reverse)

seq1  AGAG-ACCCA-TGCTGAGTTTGTTGAAAGA-TCAGTAACCAGACTGGAGA  47
      |||| ||||| ||||||||    ||||||| ||||| | |||||||||| 
seq2  AGAGAACCCATTGCTGAGT---GTGAAAGATTCAGTTA-CAGACTGGAG-  45

seq1  AGACCATTGATGACTTGGAAGGTAAGCTG-ACGCGCAACAAAGAGG--AG  94
      ||||||||||||||| | | ||||||||| ||||||||||||||||   |
seq2  AGACCATTGATGACTGGAAGGGTAAGCTGAACGCGCAACAAAGAGGGAGG  95

seq1  CATCT-CTGTACAC-AAAGGATGCTGGACCAGACCTGTTGA-GTCTGACC  141
      ||||| |||||||| |||||||||||||||||| ||||||| ||||||||
seq2  CATCTCCTGTACACAAAAGGATGCTGGACCAGA-CTGTTGAGGTCTGACC  144

seq1  TCCCCCTTCCTTGCCCTGAGG-CCGCTCCCTCTCTTGG-ACCCTGAGG-C  188
      |||||  | |||| ||||||| |||||||||||||||| ||||||||| |
seq2  TCCCC--TTCTTGACCTGAGGACCGCTCCCTCTCTTGGAACCCTGAGGAC  192

seq1  CAGTCTCCCGGAAGCTGACCTTGAAACT-AAGGGCTGATCTTTCTAACTG  237
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGTCTCCCGGAAGCTGACCTTGAAACTAAAGGGCTGATCTTTCTAACTG  242

seq1  -AAGGCTGTTTTCCCTCCTGCCACCCCCTCTACCCTTGACTTTTTTCACA  286
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTTTTCCCTCCTGCCACCCCCTCTACCCTTGACTTTTTTCACA  292

seq1  AAACTGTGTCAGCCTCTTCCCAGAGTTCCAGGTGGAGGCGCTGAACAACT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTCAGCCTCTTCCCAGAGTTCCAGGTGGAGGCGCTGAACAACT  342

seq1  TTGGGAACAATATTTAAGGGAATGCGAGCACAATGCCAAGTGTCTTCAAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACAATATTTAAGGGAATGCGAGCACAATGCCAAGTGTCTTCAAT  392

seq1  GCAGTTGTGATACGCACATTGTGATTACTTCTTGTCTTAGTAATCATTTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTGATACGCACATTGTGATTACTTCTTGTCTTAGTAATCATTTT  442

seq1  TAACATCCCAAGCACTCCTGCAACTTGGAGCAGCACATTTTAGCCTAATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCCAAGCACTCCTGCAACTTGGAGCAGCACATTTTAGCCTAATG  492

seq1  GATTCTGTCTCGCCATGGAAGAGAAACATGGAATGGGCCTGACTTCTGAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTCTCGCCATGGAAGAGAAACATGGAATGGGCCTGACTTCTGAG  542

seq1  AGCCAGCAGAGTCCAGGCAGGCTCCACTGTGGGAGATCTCAGTGGTCTGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGAGTCCAGGCAGGCTCCACTGTGGGAGATCTCAGTGGTCTGC  592

seq1  ACCAAGTTTTATCCAAACAACAGGGGGATTTTAGGAAGTTAGCCAAAACC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTTTATCCAAACAACAGGGGGATTTTAGGAAGTTAGCCAAAACC  642

seq1  AAAAACTGTTCCGGGCTGTGAAGGTTTTCAGCTTTGGTATCTTTGAACAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTTCCGGGCTGTGAAGGTTTTCAGCTTTGGTATCTTTGAACAA  692

seq1  CTTTACACTTATTTATTTTTTACTTTTTCCATCAGATGTGACCAAATAAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTTATTTATTTTTTACTTTTTCCATCAGATGTGACCAAATAAG  742

seq1  ACCCCACCTTCCAGGGCCTCATGCCTTTTAGGCAAGTGTGCTACCGTTCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCTTCCAGGGCCTCATGCCTTTTAGGCAAGTGTGCTACCGTTCA  792

seq1  GCCCCAACCCTGAGCCCAAACTTGTCATAGTTCTATCCCTATCCCAACTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAACCCTGAGCCCAAACTTGTCATAGTTCTATCCCTATCCCAACTG  842

seq1  CTCAAAAATGGATCATGCCACCCCTTAGTGTTGTGGTGACCTCTTAGTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATGGATCATGCCACCCCTTAGTGTTGTGGTGACCTCTTAGTGT  892

seq1  TCATGTGCCCCCAAGGGAGACAGAGAAGGAAAATGATGTTTGCCACTGAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCCCCCAAGGGAGACAGAGAAGGAAAATGATGTTTGCCACTGAT  942

seq1  TTAGTCACATGAAAGTCATCTCAACGCCCTTTCCTGAAGCTGCAGTCTCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACATGAAAGTCATCTCAACGCCCTTTCCTGAAGCTGCAGTCTCT  992

seq1  AAAGTATATTTCATTGTACTTTGTATCAGTTAATGCTGGAGAAATCTTGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATATTTCATTGTACTTTGTATCAGTTAATGCTGGAGAAATCTTGA  1042

seq1  ATAACTTATGAAAAAAAAGAACTTTTAAATTTTTATATTATTTTGAAATT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTATGAAAAAAAAGAACTTTTAAATTTTTATATTATTTTGAAATT  1092

seq1  TTGTTGGGGGGGGGGGGTTTGGTTGGGTAACTTGGCCAACCCATTGGCTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGGGGGGGGGGTTTGGTTGGGTAACTTGGCCAACCCATTGGCTG  1142

seq1  GGAGAATTC  1145
      |||||||||
seq2  GGAGAATTC  1151

seq1: chr6_66325079_66325663
seq2: B6Ng01-264I20.g_66_650

seq1  GAATTCTTAGTAGGCAACTCAGTAGGAAACTTCTACTGGCCCTGCGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTAGGCAACTCAGTAGGAAACTTCTACTGGCCCTGCGATCT  50

seq1  TAAGAGCTAGATTTTGTAAGGGCAAAGAATGCCCCTCCCCCTTTTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTAGATTTTGTAAGGGCAAAGAATGCCCCTCCCCCTTTTTGGCC  100

seq1  TGTTTGGTCAAATCCAAGATTTGAGGAGTACTCAAGATGGGTGGATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTCAAATCCAAGATTTGAGGAGTACTCAAGATGGGTGGATTTGG  150

seq1  CTCCTGTTTTTGCCTTTGTCCTTCATCTCTTCCAAAACTTTTGTAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTTTGCCTTTGTCCTTCATCTCTTCCAAAACTTTTGTAGAATT  200

seq1  GAAACTGGTTACTGTCTTCCACCTTTCAATGCAAATTTGACCTCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGTTACTGTCTTCCACCTTTCAATGCAAATTTGACCTCAAAATA  250

seq1  CATGGCACAAATGGCCGCTGCTGGCCCAAATGTGGAACTTTTCCTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACAAATGGCCGCTGCTGGCCCAAATGTGGAACTTTTCCTTTTTA  300

seq1  ACTTCTAGACTGATTTAAGTAACTCCATAAGACAGAATGGCAGCATGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGACTGATTTAAGTAACTCCATAAGACAGAATGGCAGCATGGTC  350

seq1  TGAAGCCTCCCAGCTCACTTGGATCCTTCACAAGGCTCTGGCTCACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTCCCAGCTCACTTGGATCCTTCACAAGGCTCTGGCTCACAATC  400

seq1  GTGCTCAGAACTAGAACTCCTTTGCTTTATACTTTTGTTCTACCTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGAACTAGAACTCCTTTGCTTTATACTTTTGTTCTACCTGTGCT  450

seq1  TCTGCCTCTACAAGCATGAAAAACACTGCTTGTATCTTTACCATTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTACAAGCATGAAAAACACTGCTTGTATCTTTACCATTCCAAA  500

seq1  AGTACGCGTTATCTCACAGCTGAAGTGTGGTTTAAAACGGCTGCCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGCGTTATCTCACAGCTGAAGTGTGGTTTAAAACGGCTGCCTCAGA  550

seq1  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  585
      |||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  585