BAC Information

Click to search

BAC

Clone NameB6Ng01-264O08
Chromosome6 (Build37)
Map Location 110,359,532 - 110,527,090
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264O08.bB6Ng01-264O08.g
ACCGA068684GA068685
length1,115183
definitionB6Ng01-264O08.b B6Ng01-264O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,359,532 - 110,360,660)(110,526,908 - 110,527,090)
sequence
gaattctctctcatctaaccattgattgccataagatcatatgtatctaa
cacagcagaagatatttgccaggtattgctggccattgtaacatgttaca
aagtagtaaaaacccaagttatctccagatgttatctacattccaaagaa
attcaattcaaaaaaactgtacagcttataatagctccaaacctgtcact
aacagatgcttgtccactggccctttaaaagaaattccttcaagccctcc
agtatgacaggaaaaaaggcacacatctgagactcagggaactgctgttg
tgactctcagcatcacatttgtttcctgtttcagctatatgtctcactaa
agaaccaataacaaaaaaaccaaaaaaaaaaaaaaaaaaaaaaacaaaaa
aaaacaaaaaaaaaaccaagttgcataacattagttaaagaagaacactc
tctgttcctgctgtgaattatatttttactaaatgtgaaaggttaatttg
cggtttctttcctacgaaagggcatacattttttttcgaattatttgatc
atttttttttattattctcatctgtttgtgaatgaatttacatgaactcc
taaaccactgtacattaatttgtgtttggagtatatgtgcttatttgtaa
gtggaattttgctatcaattttgggtgtttctctttctcaatttccactt
tctcttctcagacagtgtctcttggtgaatctgtagcatgactgctcacc
tgtactagctactcagaaggccccatggcttcacatgtctctacctgctc
agggctggcattatcgattgtactgattacgttttattcacaatgtgaca
caacttagagtcatttggaaaggagactgttttgattgatgaccactgtg
ggtgtcaccatccataagtaggtggctccgggttggtctaagaagctagc
tgatatctggagaacaacttctaagcagatttctcatggttctgccccag
atctgaattttcctcagtgatggtcagggacctggtggagttagcagata
gcatctctctgtgctgcctggtgatgcattatccagtgacaacttagagc
caaggcctggcagcg
atgaagttatcaagtgccttggtctgttgagacatgtgactggtcattta
gtcattttcaaaaatgtctgatttaaaaaaaaaaaaagaacagagagggg
gaagaggacgaggaagaggaggagaagtgaaggagccaaaagaaggcagg
ggaaggaaagggggaaggggggaaggaaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110359532_110360660
seq2: B6Ng01-264O08.b_50_1164

seq1  GAATTCTCTCTCATCTAACCATTGATTGCCATAAGATCATATGTATCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCATCTAACCATTGATTGCCATAAGATCATATGTATCTAA  50

seq1  CACAGCAGAAGATATTTGCCAGGTATTGCTGGCCATTGTAACATGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAAGATATTTGCCAGGTATTGCTGGCCATTGTAACATGTTACA  100

seq1  AAGTAGTAAAAACCCAAGTTATCTCCAGATGTTATCTACATTCCAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTAAAAACCCAAGTTATCTCCAGATGTTATCTACATTCCAAAGAA  150

seq1  ATTCAATTCAAAAAAACTGTACAGCTTATAATAGCTCCAAACCTGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTCAAAAAAACTGTACAGCTTATAATAGCTCCAAACCTGTCACT  200

seq1  AACAGATGCTTGTCCACTGGCCCTTTAAAAGAAATTCCTTCAAGCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGCTTGTCCACTGGCCCTTTAAAAGAAATTCCTTCAAGCCCTCC  250

seq1  AGTATGACAGGAAAAAAGGCACACATCTGAGACTCAGGGAACTGCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACAGGAAAAAAGGCACACATCTGAGACTCAGGGAACTGCTGTTG  300

seq1  TGACTCTCAGCATCACATTTGTTTCCTGTTTCAGCTATATGTCTCACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCAGCATCACATTTGTTTCCTGTTTCAGCTATATGTCTCACTAA  350

seq1  AGAACCAATAACAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAATAACAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAACAAAAA  400

seq1  AAAACAAAAAAAAAACCAAGTTGCATAACATTAGTTAAAGAAGAACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAAAACCAAGTTGCATAACATTAGTTAAAGAAGAACACTC  450

seq1  TCTGTTCCTGCTGTGAATTATATTTTTACTAAATGTGAAAGGTTAATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTGCTGTGAATTATATTTTTACTAAATGTGAAAGGTTAATTTG  500

seq1  CGGTTTCTTTCCTACGAAAGGGCATACATTTTTTTTCGAATTATTTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCTTTCCTACGAAAGGGCATACATTTTTTTTCGAATTATTTGATC  550

seq1  ATTTTTTTTTATTATTCTCATCTGTTTGTGAATGAATTTACATGAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTATTATTCTCATCTGTTTGTGAATGAATTTACATGAACTCC  600

seq1  TAAACCACTGTACATTAATTTGTGTTTGGAGTATATGTGCTTATTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACTGTACATTAATTTGTGTTTGGAGTATATGTGCTTATTTGTAA  650

seq1  GTGGAATTTTGCTATCAATTTTGGGTGTTTCTCTTTCTCAATTTCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTTTGCTATCAATTTTGGGTGTTTCTCTTTCTCAATTTCCACTT  700

seq1  TCTCTTCTCAGACAGTGTCTCTTGGTGAATCTGTAGCATGACTGCTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCAGACAGTGTCTCTTGGTGAATCTGTAGCATGACTGCTCACC  750

seq1  TGTACTAGCTACTCAGAAGGCCCCATGGCTTCACATGTCTCTACCTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAGCTACTCAGAAGGCCCCATGGCTTCACATGTCTCTACCTGCTC  800

seq1  AGGGCTGGCATTATCGATTGTACTGATTACGTTTTATTCACAATGTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGCATTATCGATTGTACTGATTACGTTTTATTCACAATGTGACA  850

seq1  CAACTTAGAGTCATTTGGAAA-GAGACTGTTTTGATTGATGACCACTGTG  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACTTAGAGTCATTTGGAAAGGAGACTGTTTTGATTGATGACCACTGTG  900

seq1  GGTGTCACCATCCATAAGTAGGTGGCTCCGGGTT-GTCTAAGAAAGCTAG  948
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GGTGTCACCATCCATAAGTAGGTGGCTCCGGGTTGGTCTAAG-AAGCTAG  949

seq1  CTGAATAATCTGGAG-ACAACTTCTTAGCAGAATTCCTCCATGGTTTCTG  997
      ||||   |||||||| ||||||||| |||||| |||   ||||| |||||
seq2  CTGA--TATCTGGAGAACAACTTCTAAGCAGATTTC--TCATGG-TTCTG  994

seq1  CCCCAGATCTG-ATTTTCCTCAGTGATGGTCAGGGACCTG--TGAGTTTA  1044
      ||||||||||| ||||||||||||||||||||||||||||   |||||  
seq2  CCCCAGATCTGAATTTTCCTCAGTGATGGTCAGGGACCTGGTGGAGTT--  1042

seq1  AGCCAGATAAACCTTCCTTCCTCTGTGCTGCCTTTGGTGATGGCATTTAT  1094
      || ||||||      | |  ||||||||||||  ||||||| ||| ||||
seq2  AG-CAGATA-----GCATCTCTCTGTGCTGCC--TGGTGAT-GCA-TTAT  1082

seq1  CACAGTGACAAACTAGAG-CACAGCCTGGGCCAGCG  1129
      | |||||||||  ||||| ||  ||||||  |||||
seq2  C-CAGTGACAACTTAGAGCCAAGGCCTGG--CAGCG  1115

seq1: chr6_110526908_110527090
seq2: B6Ng01-264O08.g_73_255 (reverse)

seq1  TCTATTTCCTTCCCCCCTTCCCCCTTTCCTTCCCCTGCCTTCTTTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCTTCCCCCCTTCCCCCTTTCCTTCCCCTGCCTTCTTTTGGCT  50

seq1  CCTTCACTTCTCCTCCTCTTCCTCGTCCTCTTCCCCCTCTCTGTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTTCTCCTCCTCTTCCTCGTCCTCTTCCCCCTCTCTGTTCTTTT  100

seq1  TTTTTTTTTAAATCAGACATTTTTGAAAATGACTAAATGACCAGTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAATCAGACATTTTTGAAAATGACTAAATGACCAGTCACAT  150

seq1  GTCTCAACAGACCAAGGCACTTGATAACTTCAT  183
      |||||||||||||||||||||||||||||||||
seq2  GTCTCAACAGACCAAGGCACTTGATAACTTCAT  183