BAC Information

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BAC

Clone NameB6Ng01-265L11
Chromosome6 (Build37)
Map Location 94,113,009 - 94,303,162
singlet/doubletdoublet
Overlap geneMagi1, LOC100043262
Upstream geneLOC100043253, LOC665831
Downstream geneLOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265L11.bB6Ng01-265L11.g
ACCGA069294GA069295
length1,1481,125
definitionB6Ng01-265L11.b B6Ng01-265L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,113,009 - 94,114,146)(94,302,038 - 94,303,162)
sequence
ggaattcaggtagccacttcttgccccttcgatgattacaacagctgtgc
ttgcggcccctgtacagcatggggactcacttcctgagccacagatgggg
cggggcttctgaccacagtggatcaatcagagtccatctctttcaaatac
acaataaagacaaagatcccagccttggtctgaagtgtatgctggaagta
agaacggagagtacaagaagcaaggaatgacagatccagaaaactctacc
agacggcattgcatccgaggcatgaacacactgggagtatctccccttcc
ccaaggtgccctatgccctgtgccctcaagttacacactttccttttaca
tttgctcaagagcatgacagaggcacacacgaaagcatttcctccctagc
caatgcaatcatcatcagacaagaccgagacagctgaggccacagaaaga
aaagtgcaaacaagccagggtggtccacggaaagaggaggaaccatgaga
atggagacaaggaagctctgagaaagcaatgaattaagtttctgttctcc
ctcagcaaacgctgaggagagagctcgctgtctgagttggctgctgatag
cagagctgtctttacaatgttttaggttctgtgaatcccacattcttttt
ctttttcttgtacagttttgtttgaaactctggcaaaacgctgcacttgg
gaagtaattgagagttggctgatgtgaagttctgtgattttcaattaaaa
acactctctcgctggctggctgctaccactgtggaaaagaaagagctgcg
atgagggtttccctgctattgaaaacaagtctgttgagctccagaatggt
gagtgagattcacttacctacctacacaaaccacttctgttcaagctata
ccacggctctgatcccagtttcctgggaacaaggcacatttctgtataga
ctaaattcttctgttttcatttcctttaagggccctttcatgaaatttgc
atttatattatccaagaatgctccaacctccccaatggcccgtgatccca
caggctccagttaattaccacggtttagtggccagcacaggcttgttggt
ccagaggacactggcgggttgagttcactatcattaacggaaaagaaa

gaattcaaggacttccttagctaccaatggagtttgacaccagctcaagc
tacatgagactttgtctctgaataagtaagtaagcaaaatgaatggatga
atgaatgaataaataaataaatgaaatctttttaaaaaaagaacctacct
gtcattccaacacaatgtagaaactagccacctgttactctaactattct
tttgttttagcaataatcctcttaccaatctgctccctcctcagtacggt
ggccatgattattcttaaaccggaaattacttttcatctggctatggcca
atgagcttgatgcatggacaagaccctccatcactgaaacagtgcagaag
ctcattaagcaattcatcacagtctttattaaaccttagagaggctttaa
tttttccttgtgcctcagaaaaaaaaaaaaatcccagaattactgaatgt
ctggataatgaaagtcagatagagcctttcaattccagcgattacacaaa
ctacaagaaaccatgggattctacaaatgatctggccaggataacatagc
tgtgagccaggcctcacaattttaaattccttctaattcagcatgccacg
tggtgggaggagaatgagaattttatcgtagagtgtatagtgctacatac
tggcagtctggacactcaagaagcagaggctgggggaatttgagtttcag
gtttttctgagccacagagagtaaccctgtctcaaaataaaataaagtaa
aattaaaacaaaacaaaattaaaaggtatttcctatgtagcatataataa
tactccaaaatatgctaagtttttattttgggaggctgggatttttgttt
tgttttgttttgttgttttactctttttagttgtcctgtttgttgtttgt
ttgtttcaagcagttttctcttttttaaggcctgactgtcctagaacttg
ctttgtagaccaaggctggcctcgaaactcagagatctgcctgcctctgc
atccctagtgctaggaccaatgccatgtaccactaccacaagagtggtaa
gttagatgccaactagttggagttggaatttgataaagttatagaggata
caaactaactgctcactgctatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94113009_94114146
seq2: B6Ng01-265L11.b_50_1196

seq1  GAATTCA-GTAGCCACTTCTTGCCCCTTCGATGATTACAACAGCTGTGCT  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAGCCACTTCTTGCCCCTTCGATGATTACAACAGCTGTGCT  50

seq1  TGCGGCCCCTGTACAGCATGGGGACTCACTTCCTGAGCCACAGATGGGGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCCCCTGTACAGCATGGGGACTCACTTCCTGAGCCACAGATGGGGC  100

seq1  GGGGCTTCTGACCACAGTGGATCAATCAGAGTCCATCTCTTTCAAATACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCTGACCACAGTGGATCAATCAGAGTCCATCTCTTTCAAATACA  150

seq1  CAATAAAGACAAAGATCCCAGCCTTGGTCTGAAGTGTATGCTGGAAGTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGACAAAGATCCCAGCCTTGGTCTGAAGTGTATGCTGGAAGTAA  200

seq1  GAACGGAGAGTACAAGAAGCAAGGAATGACAGATCCAGAAAACTCTACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGAGAGTACAAGAAGCAAGGAATGACAGATCCAGAAAACTCTACCA  250

seq1  GACGGCATTGCATCCGAGGCATGAACACACTGGGAGTATCTCCCCTTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCATTGCATCCGAGGCATGAACACACTGGGAGTATCTCCCCTTCCC  300

seq1  CAAGGTGCCCTATGCCCTGTGCCCTCAAGTTACACACTTTCCTTTTACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCCCTATGCCCTGTGCCCTCAAGTTACACACTTTCCTTTTACAT  350

seq1  TTGCTCAAGAGCATGACAGAGGCACACACGAAAGCATTTCCTCCCTAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAGAGCATGACAGAGGCACACACGAAAGCATTTCCTCCCTAGCC  400

seq1  AATGCAATCATCATCAGACAAGACCGAGACAGCTGAGGCCACAGAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATCATCATCAGACAAGACCGAGACAGCTGAGGCCACAGAAAGAA  450

seq1  AAGTGCAAACAAGCCAGGGTGGTCCACGGAAAGAGGAGGAACCATGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAACAAGCCAGGGTGGTCCACGGAAAGAGGAGGAACCATGAGAA  500

seq1  TGGAGACAAGGAAGCTCTGAGAAAGCAATGAATTAAGTTTCTGTTCTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAAGGAAGCTCTGAGAAAGCAATGAATTAAGTTTCTGTTCTCCC  550

seq1  TCAGCAAACGCTGAGGAGAGAGCTCGCTGTCTGAGTTGGCTGCTGATAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACGCTGAGGAGAGAGCTCGCTGTCTGAGTTGGCTGCTGATAGC  600

seq1  AGAGCTGTCTTTACAATGTTTTAGGTTCTGTGAATCCCACATTCTTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTCTTTACAATGTTTTAGGTTCTGTGAATCCCACATTCTTTTTC  650

seq1  TTTTTCTTGTACAGTTTTGTTTGAAACTCTGGCAAAACGCTGCACTTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTACAGTTTTGTTTGAAACTCTGGCAAAACGCTGCACTTGGG  700

seq1  AAGTAATTGAGAGTTGGCTGATGTGAAGTTCTGTGATTTTCAATTAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTGAGAGTTGGCTGATGTGAAGTTCTGTGATTTTCAATTAAAAA  750

seq1  CACTCTCTCGCTGGCTGGCTGCTACCACTGTGGAAAAGAAAGAGCTGCGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCGCTGGCTGGCTGCTACCACTGTGGAAAAGAAAGAGCTGCGA  800

seq1  TGAGGGTTTCCCTGCTATTGAAAACAAGTCTGTTGAGCTCCAGAATGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTTCCCTGCTATTGAAAACAAGTCTGTTGAGCTCCAGAATGGTG  850

seq1  AGTGAGATTCACTTACCTACCTACACAAACCACTTCTGTTCAAGCTATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATTCACTTACCTACCTACACAAACCACTTCTGTTCAAGCTATAC  900

seq1  CACGGCTCTGATCCCAG-TTCCTGGGAACAAGGCACATTTCTGTATAGAC  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACGGCTCTGATCCCAGTTTCCTGGGAACAAGGCACATTTCTGTATAGAC  950

seq1  T-AATTCTTCTGTTTTCA-TTCCTTAAAGG--CCCTTCATG-AATTTGCA  993
      | |||||||||||||||| |||||| ||||  || |||||| ||||||||
seq2  TAAATTCTTCTGTTTTCATTTCCTTTAAGGGCCCTTTCATGAAATTTGCA  1000

seq1  TTTATA-TATCCAAGAATGCTCCAAACTCCCAAAT-GCCCGTGATCCCAC  1041
      |||||| |||||||||||||||||| ||||| ||| ||||||||||||||
seq2  TTTATATTATCCAAGAATGCTCCAACCTCCCCAATGGCCCGTGATCCCAC  1050

seq1  AGGGCTCCAG-TAATTACCAC-GTTTAGTGG-CAGCACAGGCTTGTTG--  1086
      | |||||||| |||||||||| ||||||||| ||||||||||||||||  
seq2  A-GGCTCCAGTTAATTACCACGGTTTAGTGGCCAGCACAGGCTTGTTGGT  1099

seq1  TCAGAAGACACTTGCCGGGTTTGAAGTTCACTATCATTAACAGAAAAAGA  1136
       |||| ||||| || ||||||   ||||||||||||||||| | ||||||
seq2  CCAGAGGACAC-TGGCGGGTT--GAGTTCACTATCATTAAC-GGAAAAGA  1145

seq1  AA  1138
      ||
seq2  AA  1147


seq1: chr6_94302038_94303162
seq2: B6Ng01-265L11.g_68_1192 (reverse)

seq1  AAGATAGCAGTAGAGAAAATAAATTTGTATCCTTCTATAACTTTATCAAA  50
      ||||||||||| |||  | | | ||||||||| |||||||||||||||||
seq2  AAGATAGCAGT-GAG-CAGTTAGTTTGTATCC-TCTATAACTTTATCAAA  47

seq1  -TCCAACT-CAACTAGTTGGCATCTTACTAACCACTCTTGGTGGTAGTGG  98
       ||||||| |||||||||||||||| ||| ||||||||| ||||||||||
seq2  TTCCAACTCCAACTAGTTGGCATCTAACTTACCACTCTT-GTGGTAGTGG  96

seq1  TACATGCCTTTGGTTCTAGCACTAGGGATGCAGAGGCAGGCAGATCTCTG  148
      |||||| | ||||| |||||||||||||||||||||||||||||||||||
seq2  TACATGGCATTGGTCCTAGCACTAGGGATGCAGAGGCAGGCAGATCTCTG  146

seq1  AG-TTCGAGGCCAGCC-TGGTCTACAAAGCAAGTTCTAGGACAGTCAGGC  196
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTTCGAGGCCAGCCTTGGTCTACAAAGCAAGTTCTAGGACAGTCAGGC  196

seq1  CT--AAAAAGAGAAAACCTGCTTGAAACAAACAAACAAACAAACAGGACA  244
      ||  |||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CTTAAAAAAGAGAAAA-CTGCTTGAAACAAACAAAC-AACAAACAGGACA  244

seq1  ACTAAAAAGAGTAAAACAACAAAACAAAACAAAACAAAAATCCCAGCCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGAGTAAAACAACAAAACAAAACAAAACAAAAATCCCAGCCTC  294

seq1  CCAAAATAAAAACTTAGCATATTTTGGAGTATTATTATATGCTACATAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAAAACTTAGCATATTTTGGAGTATTATTATATGCTACATAGG  344

seq1  AAATACCTTTTAATTTTGTTTTGTTTTAATTTTACTTTATTTTATTTTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTTTAATTTTGTTTTGTTTTAATTTTACTTTATTTTATTTTGA  394

seq1  GACAGGGTTACTCTCTGTGGCTCAGAAAAACCTGAAACTCAAATTCCCCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTACTCTCTGTGGCTCAGAAAAACCTGAAACTCAAATTCCCCC  444

seq1  AGCCTCTGCTTCTTGAGTGTCCAGACTGCCAGTATGTAGCACTATACACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGCTTCTTGAGTGTCCAGACTGCCAGTATGTAGCACTATACACT  494

seq1  CTACGATAAAATTCTCATTCTCCTCCCACCACGTGGCATGCTGAATTAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGATAAAATTCTCATTCTCCTCCCACCACGTGGCATGCTGAATTAGA  544

seq1  AGGAATTTAAAATTGTGAGGCCTGGCTCACAGCTATGTTATCCTGGCCAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTAAAATTGTGAGGCCTGGCTCACAGCTATGTTATCCTGGCCAG  594

seq1  ATCATTTGTAGAATCCCATGGTTTCTTGTAGTTTGTGTAATCGCTGGAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGTAGAATCCCATGGTTTCTTGTAGTTTGTGTAATCGCTGGAAT  644

seq1  TGAAAGGCTCTATCTGACTTTCATTATCCAGACATTCAGTAATTCTGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCTCTATCTGACTTTCATTATCCAGACATTCAGTAATTCTGGGA  694

seq1  TTTTTTTTTTTTTCTGAGGCACAAGGAAAAATTAAAGCCTCTCTAAGGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCTGAGGCACAAGGAAAAATTAAAGCCTCTCTAAGGTT  744

seq1  TAATAAAGACTGTGATGAATTGCTTAATGAGCTTCTGCACTGTTTCAGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGACTGTGATGAATTGCTTAATGAGCTTCTGCACTGTTTCAGTG  794

seq1  ATGGAGGGTCTTGTCCATGCATCAAGCTCATTGGCCATAGCCAGATGAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGTCTTGTCCATGCATCAAGCTCATTGGCCATAGCCAGATGAAA  844

seq1  AGTAATTTCCGGTTTAAGAATAATCATGGCCACCGTACTGAGGAGGGAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTCCGGTTTAAGAATAATCATGGCCACCGTACTGAGGAGGGAGC  894

seq1  AGATTGGTAAGAGGATTATTGCTAAAACAAAAGAATAGTTAGAGTAACAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGTAAGAGGATTATTGCTAAAACAAAAGAATAGTTAGAGTAACAG  944

seq1  GTGGCTAGTTTCTACATTGTGTTGGAATGACAGGTAGGTTCTTTTTTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGTTTCTACATTGTGTTGGAATGACAGGTAGGTTCTTTTTTTAA  994

seq1  AAAGATTTCATTTATTTATTTATTCATTCATTCATCCATTCATTTTGCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTCATTTATTTATTTATTCATTCATTCATCCATTCATTTTGCTT  1044

seq1  ACTTACTTATTCAGAGACAAAGTCTCATGTAGCTTGAGCTGGTGTCAAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTATTCAGAGACAAAGTCTCATGTAGCTTGAGCTGGTGTCAAAC  1094

seq1  TCCATTGGTAGCTAAGGAAGTCCTTGAATTC  1125
      |||||||||||||||||||||||||||||||
seq2  TCCATTGGTAGCTAAGGAAGTCCTTGAATTC  1125


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