BAC Information

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BAC

Clone NameB6Ng01-265L20
Chromosome13 (Build37)6 (Build37)
Map Location 116,096,019 - 116,096,64911,543,303 - 11,543,952
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265L20.bB6Ng01-265L20.g
ACCGA069312GA069313
length805651
definitionB6Ng01-265L20.b B6Ng01-265L20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,096,019 - 116,096,649)(11,543,303 - 11,543,952)
sequence
gaattctcaactgaggaataccaaatggccaagaagcacctaaagaaatg
ttcaacatccttagtcatcaagaaatgcaaatcaaacaaccctgagattc
tacctcacaccactcagaatgactaaaaatgggaatctgtgggtagggaa
gtggggggtgggtagggtggagcatattgccatcacaatggaaagaacat
ccttttctaatgttgttctggctgttttgctaagacacgcctccaagaat
tctgtttgtttgcatcagcttctgctaaagactagaaaggaccacataac
aagatgatggatatcgccaatcataatgacaggtcaccatgtggcgttga
ctttgtagatcagcacatctttcatcctacccttgcatttcccatggctg
tcacaaagtgttcctacactaacatgtatggcctttaccaatttgatctt
cttaagttaaataacttaataacttatctacagtggtggccaatacctat
gaaaatttatctaaaagccactctttaaataccaagccaactgaagtgat
tttttgattgtttttgttctggcagtaatttttttttaccctattctttt
tttttttttttaattgaaatcagattttttttccctcatataacgtatta
agaccatgtttccccttctccttacacctcccagaccctctcacctcttc
catccacatggttccatccctttctctctttcagcagagaacaagcaggc
ttctatggcataataataaaaatttaaaaaatgcttgaattgaatgacac
aaaca
gaattccaggaaaattgtcagccgaggaagaagagaaaggatatatagct
ggaggacctcaaatgccaagatgccttttaaagggcaaacagcctctccg
gtgaagaaatgtcatgcaatgagatatcgggcaggaggagggtggagggg
agttgagaagtcctcttttatgttttccctcctttccagtgtatcccctt
taagaagtgatccagccagagacttgagtcccctgctggttgactgaaag
tagcaaactgggtgacagctgagtcagttctttctgggagctcatctggc
atgtgtgtgccagggttttttcaggctgtgccaaaagagaagaatgactt
cactaagactgaacgcgctgctcaccctcagtaaacagtatcctaacaat
acaacggtgatatttttgtagcagtaataacgatgacggtatgtttttga
tcatcaagttcaaagacactttttgcgtgctaacgtatgattttcatcaa
agccgagtacatggtacttgcagcggtcagctgactccagagaatataaa
tactctcattttagaggacaaatttccaattccaattgcagtgtaataaa
tttaattgttcaatgtaccttttttctatccatttacgtgtgtataatac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116096019_116096649
seq2: B6Ng01-265L20.b_215_852 (reverse)

seq1  TGTTTGTTTCATTCAATTCAAGCATTTTTTAAA-TTTTATTATTATCCCA  49
      ||||||| ||||||||||||||||||||||||| |||||||||||| |||
seq2  TGTTTGTGTCATTCAATTCAAGCATTTTTTAAATTTTTATTATTATGCCA  50

seq1  TAGAAGCCTGCTTGTTCTCTGCTGAAAGAGAGAAAGGGATGGAACCATGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCTGCTTGTTCTCTGCTGAAAGAGAGAAAGGGATGGAACCATGT  100

seq1  GGATGG-AGAGGTGAGAGGGTCTGGGAGGTGTAAGGAGAAGGGGAAACAT  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAGAGGTGAGAGGGTCTGGGAGGTGTAAGGAGAAGGGGAAACAT  150

seq1  GGTCTTAATACGTTATATGAGGG-AAAAAAATCTGATTTCAATT-AAAAA  196
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  GGTCTTAATACGTTATATGAGGGAAAAAAAATCTGATTTCAATTAAAAAA  200

seq1  AAAAAAAAAGAATAGGGT--AAAAAAATTACTGCCAGAAC-AAAACAATC  243
      ||||||||||||||||||  |||||||||||||||||||| |||||||||
seq2  AAAAAAAAAGAATAGGGTAAAAAAAAATTACTGCCAGAACAAAAACAATC  250

seq1  AAAAAATCACTTCAGTTGGCTTGGTATTTAAAGAGTGGCTTTTAGATAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCACTTCAGTTGGCTTGGTATTTAAAGAGTGGCTTTTAGATAAA  300

seq1  TTTTCATAGGTATTGGCCACCACTGTAGATAAGTTATTAAGTTATTTAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAGGTATTGGCCACCACTGTAGATAAGTTATTAAGTTATTTAAC  350

seq1  TTAAGAAGATCAAATTGGTAAAGGCCATACATGTTAGTGTAGGAACACTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGATCAAATTGGTAAAGGCCATACATGTTAGTGTAGGAACACTT  400

seq1  TGTGACAGCCATGGGAAATGCAAGGGTAGGATGAAAGATGTGCTGATCTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGCCATGGGAAATGCAAGGGTAGGATGAAAGATGTGCTGATCTA  450

seq1  CAAAGTCAACGCCACATGGTGACCTGTCATTATGATTGGCGATATCCATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAACGCCACATGGTGACCTGTCATTATGATTGGCGATATCCATC  500

seq1  ATCTTGTTATGTGGTCCTTTCTAGTCTTTAGCAGAAGCTGATGCAAACAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTATGTGGTCCTTTCTAGTCTTTAGCAGAAGCTGATGCAAACAA  550

seq1  ACAGAATTCTTGGAGGCGTGTCTTAGCAAAACAGCCAGAACAACATTAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCTTGGAGGCGTGTCTTAGCAAAACAGCCAGAACAACATTAGA  600

seq1  AAAGGATGTTCTTTCCATTGTGATGGCAATATGCTCCA  631
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTTCTTTCCATTGTGATGGCAATATGCTCCA  638

seq1: chr6_11543303_11543952
seq2: B6Ng01-265L20.g_67_717 (reverse)

seq1  TGTATTCTACACACGTAAATTTCTAG-CTGTGGGTACATTGAACAATTAA  49
      |||||| |||||||||||||   |||      ||||||||||||||||||
seq2  TGTATTATACACACGTAAATGGATAGAAAAAAGGTACATTGAACAATTAA  50

seq1  ATTTATTACATTGCAATAGGAATTGGAAATTTTTCCTCTAAAATGAGAGT  99
      |||||||||| |||||| |||||||||||||| |||||||||||||||||
seq2  ATTTATTACACTGCAATTGGAATTGGAAATTTGTCCTCTAAAATGAGAGT  100

seq1  ATCGATCGACACTCGAGTCAGCTGACCACTGCAAGTACCATTTACTCGGC  149
      ||  ||   | || ||||||||||||| ||||||||||||| ||||||||
seq2  ATTTATATTCTCTGGAGTCAGCTGACCGCTGCAAGTACCATGTACTCGGC  150

seq1  CTTTATGAAAATCATACGTTAGCACTCAAAATGTGTCTTTGAACTTGATG  199
       || ||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TTTGATGAAAATCATACGTTAGCACGCAAAAAGTGTCTTTGAACTTGATG  200

seq1  ATCAAAAACATACCGTCATCGTTATTACTGCTACAAAAATATTAACGCTG  249
      |||||||||||||||||||||||||||||||||||||||||| | || ||
seq2  ATCAAAAACATACCGTCATCGTTATTACTGCTACAAAAATATCACCGTTG  250

seq1  TATTGTTAGGATACTGTTTACTGAGGGTGTGCAGCGCGTTCAGACTTAGT  299
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TATTGTTAGGATACTGTTTACTGAGGGTGAGCAGCGCGTTCAGTCTTAGT  300

seq1  GAAGTCATTCTTCTCTTTTGGCACAGCCTGAAAAAACCCTGGCACACACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATTCTTCTCTTTTGGCACAGCCTGAAAAAACCCTGGCACACACA  350

seq1  TGCCAGATGAGCTCCCAGAAAGAACTGACTCAGCTGTCACCCAGTTTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATGAGCTCCCAGAAAGAACTGACTCAGCTGTCACCCAGTTTGCT  400

seq1  ACTTTCAGTCAACCAGCAGGGGACTCAAGTCTCTGGCTGGATCACTTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTCAACCAGCAGGGGACTCAAGTCTCTGGCTGGATCACTTCTT  450

seq1  AAAGGGGATACACTGGAAAGGAGGGAAAACATAAAAGAGGACTTCTCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATACACTGGAAAGGAGGGAAAACATAAAAGAGGACTTCTCAAC  500

seq1  TCCCCTCCACCCTCCTCCTGCCCGATATCTCATTGCATGACATTTCTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCACCCTCCTCCTGCCCGATATCTCATTGCATGACATTTCTTCA  550

seq1  CCGGAGAGGCTGTTTGCCCTTTAAAAGGCATCTTGGCATTTGAGGTCCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGAGGCTGTTTGCCCTTTAAAAGGCATCTTGGCATTTGAGGTCCTC  600

seq1  CAGCTATATATCCTTTCTCTTCTTCCTCGGCTGACAATTTTCCTGGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATATATCCTTTCTCTTCTTCCTCGGCTGACAATTTTCCTGGAATT  650

seq1  C  650
      |
seq2  C  651