BAC Information

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BAC

Clone NameB6Ng01-265L23
Chromosome6 (Build37)
Map Location 89,695,374 - 89,696,046
singlet/doubletsinglet
Overlap genenone
Upstream geneMgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7
Downstream geneV1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265L23.bB6Ng01-265L23.g
ACCGA069318GA069319
length6791,147
definitionB6Ng01-265L23.b B6Ng01-265L23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaacatttttcctattgcttcatttcataattctttgatttttc
aatattatagtacaattatatgagttatcaattcccctatcttttccaaa
acctttccaaataaacatcaatgctgtcctttgctttcatggcctctttt
ttagtacataatacatatccttaaatgcataacttcaatatgctcagtct
gtgtaatggtacttgtatgtgtgttttctaagcagacatttggttttgga
cactgaattgatgtggtttccccagaagaagacagttccttctgaatttt
tggcctgattgggctgtgttggtacatgtctttttttcaaccaccttgaa
ggtagaagctggcagatctctgagttagagcccggcttggcctacagagt
gagttctaggttagccagggctacacagagaaacattgtcttgaaaaata
gagaaagggagaaatcgaaatgaggagaggaaaaaggggctatagggtag
ggaaacacacacacacacagcagggggtggagagagagagagagagagag
agagagagagagagagagagagagagagtttttgacttggtggtaaagga
gcagaataaaacagacacctgaaattaaaataacccctgtgcactagaac
cccatgggcacacagtccctccaggaggg
gaattccctatctttccaaaacttttatcatgaatgggtgtttgatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttcactatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttcaattttgtgaaatagtttgtacagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactacttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgaatatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgttccacttggttgatttcacccctgagtttgattatt
cctgccgtctactcctctcgggtgaatttgcttccttttttctagggctt
tagatgtgttgtcaagctgctagtatgtgctctctcccattcttctggag
gcactcagagctatgagttccctctaggaatgcttcatgtgtccatagtt
tggtacgttgtggcctcatttccataactctaaaaaggtcttaattcttc
tattcccttctgaaccaggaatccatgagagagtggtaatcagtttccgg
cagttgcctcatactagtgtaatgagatacgcctagtgccatggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_89695374_89696046
seq2: B6Ng01-265L23.b_45_723

seq1  GAATTCTAACATTTTTCCTATTGCTTCATTTCATAATTCTTTGATTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACATTTTTCCTATTGCTTCATTTCATAATTCTTTGATTTTTC  50

seq1  AATATTATAGTACAATTATATGAGTTATCAATTCCCCTATCTTTTCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATAGTACAATTATATGAGTTATCAATTCCCCTATCTTTTCCAAA  100

seq1  ACCTTTCCAAATAAACATCAATGCTGTCCTTTGCTTTCATGGCCTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCAAATAAACATCAATGCTGTCCTTTGCTTTCATGGCCTCTTTT  150

seq1  TTAGTACATAATACATATCCTTAAATGCATAACTTCAATATGCTCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACATAATACATATCCTTAAATGCATAACTTCAATATGCTCAGTCT  200

seq1  GTGTAATGGTACTTGTATGTGTGTTTTCTAAGCAGACATTTGGTTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGGTACTTGTATGTGTGTTTTCTAAGCAGACATTTGGTTTTGGA  250

seq1  CACTGAATTGATGTGGTTTCCCCAGAAGAAGACAGTTCCTTCTGAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATTGATGTGGTTTCCCCAGAAGAAGACAGTTCCTTCTGAATTTT  300

seq1  TGGCCTGATTGGGCTGTGTTGGTACATGTCTTTTTTTCAACCACCTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGATTGGGCTGTGTTGGTACATGTCTTTTTTTCAACCACCTTGAA  350

seq1  GGTAGAAGCTGGCAGATCTCTGAGTTAGAGCCCGGCTTGGCCTACAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGCTGGCAGATCTCTGAGTTAGAGCCCGGCTTGGCCTACAGAGT  400

seq1  GAGTTCTAGGTTAGCCAGGGCTACACAGAGAAACATTGTCTTGAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGGTTAGCCAGGGCTACACAGAGAAACATTGTCTTGAAAAATA  450

seq1  GAGAAAGGGAGAAATCGAAATGAGGAGAGGAAAAAGGGGCTATAGGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGAGAAATCGAAATGAGGAGAGGAAAAAGGGGCTATAGGGTAG  500

seq1  GGAAACACACACACACACAGCAGGGGGTGGAGAGAGAGAGAGAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACACACACACACAGCAGGGGGTGGAGAGAGAGAGAGAGAGAGAG  550

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAG-ATTTGACTTGGTGGTAAAGGA  599
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTTGACTTGGTGGTAAAGGA  600

seq1  GCAGAATAAAACAGACA-CTGAAATT-AAATAA-CCCTGTGCACTAGAA-  645
      ||||||||||||||||| |||||||| |||||| ||||||||||||||| 
seq2  GCAGAATAAAACAGACACCTGAAATTAAAATAACCCCTGTGCACTAGAAC  650

seq1  CCCATGGGCACACAGT-CCTCCAGGAGGG  673
      |||||||||||||||| ||||||||||||
seq2  CCCATGGGCACACAGTCCCTCCAGGAGGG  679