BAC Information

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BAC

Clone NameB6Ng01-265N22
Chromosome6 (Build37)
Map Location 59,888,946 - 60,014,957
singlet/doubletdoublet
Overlap geneEG627108
Upstream geneD430015B01Rik, Tigd2, Gprin3, EG634166
Downstream geneEG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018, Mmrn1, LOC100041756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265N22.bB6Ng01-265N22.g
ACCGA069407GA069408
length1,2021,117
definitionB6Ng01-265N22.b B6Ng01-265N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,013,759 - 60,014,957)(59,888,946 - 59,890,079)
sequence
gaattctgaaatccttttctatcaatacttgtatttataaccaaggaata
tctccttatatctaaaaccattttctgaatcctaaaaaaaaattagtctt
aattgtgagactatacctatgtagtgttcaaccccatcagaggtatgaga
ggaactaaatattacctgagtatgcaggaagtgcagagcaagtacctctc
aaagctacagaaatgacaaagagcactgactgcctagataaacaaatacc
ctgaatttttctgagtcatgaaaacatcaatcatttttttctgtttcttt
gtttgtttgtttgtttgttttgtaggttccacattatattttgtgaagac
tcttaattgtgacttaaagtaccctctaatttctattatttggccttaga
tctagcatttaatattttagtcttctctttctctaagtctcttttattct
tttctctctttaatgaagatagataaaattataattactactgaacatat
aatcctttcatgtggacagtaaaactaaagctatatggagtcctaatgcc
ttcttttacagtgtttttttatttttatatggaaaatatttcctttttta
gtatctaactctcatcttcttgaggaaactttaattttctttctctttcc
ttttttgaagaattcatatgtttatattttacatccatatttctattact
gtaaatggtctgtttctgtagcttgtattcaccatttaaaacattgatct
attttttctcttcctcagaaatcattatatgactatctttatatgccatt
gctttctaaccttgatgtcttatttgtgttccattttctaaacttttttc
cattcctgtgtgacttattccttataatttatttaattttatcttaagga
atttatttcattaattccaaaatagttagtttttaaggttttatacctca
tcctctattttcttttgattggagcataattataaatgtcttacttcacc
agtttatttgaacttgggattattttctgatctctcgtgtcctttgtggt
ttagttcaaacatctcactgtactagtcccagcccagttcatcagctcac
agaagcagctgtttttcttcactattgaagtttgtttggctgctggaagg
tggttaccagcagcgtataagaactgggaagcgcctattttttcctaatg
tg

gaattcctattgaaaatattgaaaatgtctatgaaacaggtaagttggtt
cctgtaaaagtgaattgaaattagaccaaaaaatagattcttgttttctt
tttctgcaatttaaaaccctgacatgaaaatatgaaataaatctagtata
atttgaaactgtttccctctttttcctcacagatgcatgccctaaattgg
agctttgatctaataagcagaaacatattagtcactattcttgactcact
ggaattaaatgttgaagttgattcaatatcgtaaacacaaagagctcaca
attatcactcaggaatttcttcacaacttactgttattgaaaatcattat
gggatttatgtatgattaattgcattggtttcaacattgtaaaagtattt
tcaataaaatgcccaatgcacatctttcaatggaatttatcaggagctga
tatggaagtcaaatcaaccccctatcatgaatgggaatatttttgtgcat
tttaaaatataggagctacaattacatagaacaccaaaagacatcactta
tttctactacatttcttttgtattacttattttgggtagttttctaaaat
atcttaaggggacatattgcagggcagccttgtttggttaaggtaaaatg
aggttaggttggtcattcatcacttatcatactactctcttagggaataa
aacctgcttcattggggctagcacttcctgtgacctacaagaatattaca
cctccttgggggcaagagagaaagcaaaaagacaaacagggaaaagattt
aaacacaaatgtgtgcgcatacacacagacacacacagagactcacacac
acaaacacactgcatgaatgaagcatgacaatatccaaaaggaaataatt
ttcttccactgcttatatatcccagtaaatatttcagattacataaacat
tacaatgtgattacagtcactttctttatgatgatatttttaatatgtat
gtccaaataccttactgaaaaacatttacatataccacatgaaggaaaca
aatcattccaggactcacatatgttcataagtaggcaccttgttatagat
taagaagtattaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60013759_60014957
seq2: B6Ng01-265N22.b_45_1246 (reverse)

seq1  CACATTAGG-AAAAATAGCGTCT--CCAG-TCTTATACAGCTGCTGGT-A  45
      ||||||||| ||||||||   ||  |||| |||||||| ||||||||| |
seq2  CACATTAGGAAAAAATAGGCGCTTCCCAGTTCTTATAC-GCTGCTGGTAA  49

seq1  CCACCTTTCCAGCCAGCAAAC-AACT--CATAGTGAAGGAAAACAGCTGC  92
      ||||| |||||||   ||||| ||||   ||||||||| |||||||||||
seq2  CCACC-TTCCAGCAGCCAAACAAACTTCAATAGTGAAGAAAAACAGCTGC  98

seq1  TTCTGTGAGCTGATGGACTGGGCTGGGACTAGTTACAGTGAGATGTTTGA  142
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TTCTGTGAGCTGATGAACTGGGCTGGGACTAG-TACAGTGAGATGTTTGA  147

seq1  ACTAAACCACAAAGGAACACGGAGAGATTCAG-AAATAAT-CCAAGTTCA  190
      ||||||||||||||| |||| |||||| |||| ||||||| |||||||||
seq2  ACTAAACCACAAAGG-ACAC-GAGAGA-TCAGAAAATAATCCCAAGTTCA  194

seq1  AATAAACTGGTGAAGTAAGACATTTATAATTATGCTCCAATTCAAAAGAA  240
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATAAACTGGTGAAGTAAGACATTTATAATTATGCTCCAA-TCAAAAGAA  243

seq1  AATAGAGGATGAGGTATAAAACCTTAAAAACTAACTATTTTGGAATTAAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGATGAGGTATAAAACCTTAAAAACTAACTATTTTGGAATTAAT  293

seq1  GAAATAAATTCCTTAAGATAAAATTAAATAAATTATAAGGAATAAGTCAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATTCCTTAAGATAAAATTAAATAAATTATAAGGAATAAGTCAC  343

seq1  ACAGGAATGGAAAAAAGTTTAGAAAATGGAACACAAATAAGACATCAAGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATGGAAAAAAGTTTAGAAAATGGAACACAAATAAGACATCAAGG  393

seq1  TTAGAAAGCAATGGCATATAAAGATAGTCATATAATGATTTCTGAGGAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGCAATGGCATATAAAGATAGTCATATAATGATTTCTGAGGAAG  443

seq1  AGAAAAAATAGATCAATGTTTTAAATGGTGAATACAAGCTACAGAAACAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATAGATCAATGTTTTAAATGGTGAATACAAGCTACAGAAACAG  493

seq1  ACCATTTACAGTAATAGAAATATGGATGTAAAATATAAACATATGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTACAGTAATAGAAATATGGATGTAAAATATAAACATATGAATTC  543

seq1  TTCAAAAAAGGAAAGAGAAAGAAAATTAAAGTTTCCTCAAGAAGATGAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAGGAAAGAGAAAGAAAATTAAAGTTTCCTCAAGAAGATGAGA  593

seq1  GTTAGATACTAAAAAAGGAAATATTTTCCATATAAAAATAAAAAAACACT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATACTAAAAAAGGAAATATTTTCCATATAAAAATAAAAAAACACT  643

seq1  GTAAAAGAAGGCATTAGGACTCCATATAGCTTTAGTTTTACTGTCCACAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAAGGCATTAGGACTCCATATAGCTTTAGTTTTACTGTCCACAT  693

seq1  GAAAGGATTATATGTTCAGTAGTAATTATAATTTTATCTATCTTCATTAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTATATGTTCAGTAGTAATTATAATTTTATCTATCTTCATTAA  743

seq1  AGAGAGAAAAGAATAAAAGAGACTTAGAGAAAGAGAAGACTAAAATATTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAAGAATAAAAGAGACTTAGAGAAAGAGAAGACTAAAATATTA  793

seq1  AATGCTAGATCTAAGGCCAAATAATAGAAATTAGAGGGTACTTTAAGTCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGATCTAAGGCCAAATAATAGAAATTAGAGGGTACTTTAAGTCA  843

seq1  CAATTAAGAGTCTTCACAAAATATAATGTGGAACCTACAAAACAAACAAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGAGTCTTCACAAAATATAATGTGGAACCTACAAAACAAACAAA  893

seq1  CAAACAAACAAAGAAACAGAAAAAAATGATTGATGTTTTCATGACTCAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAGAAACAGAAAAAAATGATTGATGTTTTCATGACTCAGA  943

seq1  AAAATTCAGGGTATTTGTTTATCTAGGCAGTCAGTGCTCTTTGTCATTTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGGGTATTTGTTTATCTAGGCAGTCAGTGCTCTTTGTCATTTC  993

seq1  TGTAGCTTTGAGAGGTACTTGCTCTGCACTTCCTGCATACTCAGGTAATA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTTGAGAGGTACTTGCTCTGCACTTCCTGCATACTCAGGTAATA  1043

seq1  TTTAGTTCCTCTCATACCTCTGATGGGGTTGAACACTACATAGGTATAGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCTCTCATACCTCTGATGGGGTTGAACACTACATAGGTATAGT  1093

seq1  CTCACAATTAAGACTAATTTTTTTTTAGGATTCAGAAAATGGTTTTAGAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATTAAGACTAATTTTTTTTTAGGATTCAGAAAATGGTTTTAGAT  1143

seq1  ATAAGGAGATATTCCTTGGTTATAAATACAAGTATTGATAGAAAAGGATT  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGATATTCCTTGGTTATAAATACAAGTATTGATAGAAAAGGATT  1193

seq1  TCAGAATTC  1199
      |||||||||
seq2  TCAGAATTC  1202


seq1: chr6_59888946_59890079
seq2: B6Ng01-265N22.g_68_1184

seq1  GAATTCCTATTGAAAATATTGAAAATGTCTATGAAACAGGTAAGTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTGAAAATATTGAAAATGTCTATGAAACAGGTAAGTTGGTT  50

seq1  CCTGTAAAAGTGAATTGAAATTAGACCAAAAAATAGATTCTTGTTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAAAGTGAATTGAAATTAGACCAAAAAATAGATTCTTGTTTTCTT  100

seq1  TTTCTGCAATTTAAAACCCTGACATGAAAATATGAAATAAATCTAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAATTTAAAACCCTGACATGAAAATATGAAATAAATCTAGTATA  150

seq1  ATTTGAAACTGTTTCCCTCTTTTTCCTCACAGATGCATGCCCTAAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACTGTTTCCCTCTTTTTCCTCACAGATGCATGCCCTAAATTGG  200

seq1  AGCTTTGATCTAATAAGCAGAAACATATTAGTCACTATTCTTGACTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGATCTAATAAGCAGAAACATATTAGTCACTATTCTTGACTCACT  250

seq1  GGAATTAAATGTTGAAGTTGATTCAATATCGTAAACACAAAGAGCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAATGTTGAAGTTGATTCAATATCGTAAACACAAAGAGCTCACA  300

seq1  ATTATCACTCAGGAATTTCTTCACAACTTACTGTTATTGAAAATCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTCAGGAATTTCTTCACAACTTACTGTTATTGAAAATCATTAT  350

seq1  GGGATTTATGTATGATTAATTGCATTGGTTTCAACATTGTAAAAGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTATGTATGATTAATTGCATTGGTTTCAACATTGTAAAAGTATTT  400

seq1  TCAATAAAATGCCCAATGCACATCTTTCAATGGAATTTATCAGGAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAATGCCCAATGCACATCTTTCAATGGAATTTATCAGGAGCTGA  450

seq1  TATGGAAGTCAAATCAACCCCCTATCATGAATGGGAATATTTTTGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGTCAAATCAACCCCCTATCATGAATGGGAATATTTTTGTGCAT  500

seq1  TTTAAAATATAGGAGCTACAATTACATAGAACACCAAAAGACATCACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATAGGAGCTACAATTACATAGAACACCAAAAGACATCACTTA  550

seq1  TTTCTACTACATTTCTTTTGTATTACTTATTTTGGGTAGTTTTCTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTACATTTCTTTTGTATTACTTATTTTGGGTAGTTTTCTAAAAT  600

seq1  ATCTTAAGGGGACATATTGCAGGGCAGCCTTGTTTGGTTAAGGTAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGGGGACATATTGCAGGGCAGCCTTGTTTGGTTAAGGTAAAATG  650

seq1  AGGTTAGGTTGGTCATTCATCACTTATCATACTACTCTCTTAGGGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGTTGGTCATTCATCACTTATCATACTACTCTCTTAGGGAATAA  700

seq1  AACCTGCTTCATTGGGGCTAGCACTTCCTGTGACCTACAAGAATATTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTTCATTGGGGCTAGCACTTCCTGTGACCTACAAGAATATTACA  750

seq1  CCTCCTTGGGGGCAAGAGAGAAAGCAAAAAGACAAACAGGGAAAAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGGGGGCAAGAGAGAAAGCAAAAAGACAAACAGGGAAAAGATTT  800

seq1  AAACACAAATGTGTGCGCATACACACAGACACACACAGAGACTCACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAATGTGTGCGCATACACACAGACACACACAGAGACTCACACAC  850

seq1  ACAAACACACTGCATGAATGAAGCATGACAATATCCAAAAGGAAATAATT  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAAACACACTGCATGAATGAAGCATGACAATATCCAAAAGGAAATAA-T  899

seq1  TTTCTTCCACTGCTTATATATCCCAGTAAAATATTTCAGATTACATAAAC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCTTCCACTGCTTATATATCCCAGT-AAATATTTCAGATTACATAAAC  948

seq1  ATTACAATGTGATTACAGTCAACTTTCTTTTAATGAATGATTATTTTTAA  1000
      |||||||||||||||||||| |||||||||  ||| |||| |||||||||
seq2  ATTACAATGTGATTACAGTC-ACTTTCTTT--ATG-ATGA-TATTTTTAA  993

seq1  TATGTATGTTCCCAAATACCTTTACTTGAAAAACAATTTACATATTACAC  1050
      |||||||||  ||||||||| |||| |||||||| ||||||||||  |||
seq2  TATGTATGT--CCAAATACC-TTAC-TGAAAAAC-ATTTACATATACCAC  1038

seq1  ATGAAGGGGAAACAAATCATTCCCAGGAACTCACATATGTTCATAAGTAA  1100
      |||||  |||||||||||||| ||||| ||||||||||||||||||||| 
seq2  ATGAA--GGAAACAAATCATT-CCAGG-ACTCACATATGTTCATAAGTAG  1084

seq1  GCACTTTGTTATAGATTAAGAAGGTATTAAAAAA  1134
      |||| ||||||||||||||||| |||||||||||
seq2  GCACCTTGTTATAGATTAAGAA-GTATTAAAAAA  1117


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